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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGACACGTAAACCCAATCAATTGTAGAAGTAAGAGAATTTTAGATTTGGTTCATTCTTTCATATTCTTTATGGCTTATTAGCAGTGATCAAAAATAAGAGGAGGGATGAGTTGAGCAGTCCCTTGAGCTTTTTTTTGTTCTCTCCAGTTTATTTGTATAGAAGAAATCGTGGCATAGTTTTAAACATGCCATTATTTAATTAATAATATCAATGACTATGTTATAACAAAACAAAGAACTTTGAATTTTAAATTCTGAATTTTTGTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTAATTTTGTTTGGTGAACAGTGTCAATATGTGGCGTGAGTCGGCTGGTGCACCAGTTTCCTGTTTAGCCTCATCAGGTGATTCGACCTCTCTTTCTTTTCTCTTTTTTTAACTTCTTTATATTCTGGAATATCAATATGTTTGAGAGTGATTGACTGGGAAGAAGAAGAAGATCCGTTGAGTATACAAATGGAAACGAAAAAAATAACATAACCAGGAAATTCTAATACCATATTGTCTTTTGACATTGCTTTTCCGGCGGGCACAAATATGGTCTTTTGATGTTGGCGCGGCGGGCGGGTGCAAATATGGTATTTTGACGCTGGTGCGGCGGGCGGGTGCAAATATGGTATTTTGACGCTGGCGCGGCGGGCGGGCGCAAATATGGTATTTTGACGCTGGCGTGTTCGGCGGGCGCAAATATGGTATTTTGACGCTGGCGTGGCGGGCGGGCGCGAATATGGTATTTTGACGCTGGCGTTATGGTGTTATGGCCGTGGCGGACTCAAACTGATCCTTTGGCATGGAGTTGGCTGAAGCAAATTGATCTTTTGGCATGTAGTTGGCGTGCCATTGGCGGACGCGGCATTGGGCATGGTGTTGGCGTGCCATTGGCGGACGCGGCATTGGGCATGGTGTTGGCGTGCCATTGGGGACGCGGCATTGGGCATGGTGTTGGCGTGGCATTGGTGGACGCGGCATTGGCGGCGCAAATATGCTCTTTTGGGTTGGCGGGTGTAAATGAGACAATAAGGTAATCATGAGATGGCATCAGATAAAGTTTAAAATCAGCTCAGGCACCCAACATCCATGTTTGTAACAGACCAAATTTGCACCTCATTAACATCACTGTTTTAAATGTGTAATTATGGTGGGGCGATTCTAGCCAACTGATTTCTGAATGTGGATGAACAAGGCTAAGGATTAGCTGTGGGATGTAAAAATGCATTGTTAGGAGAGCGTTCTGCCTTGGGAAGCACCCGCGCGAGCAGGAATGGACGAAGCGGAAGCGAGAATGTCGGCTGAGTAATGTAAACATTGGTGAGAATCTAATTCCCCGAAAACTTAACAGTTCTTTCGCAAGGTTCGTTCATGGAGGGTGAGTTAGGGCCTAAGATCAAGTCGAAAGGCGAAGTCGATGACAACAGGTAAATATTCTTATACTACCCCTTGTTGGTCCCGAAGGAGACTAGGTTAGCCGAAAAGGTTATCGGTTAAAGGACACAAGTGTATTCAGTTCAAGTGACACCTTGTATTCAGTTCAAGGACACAAGGTGTCACTGAACGTGGAGAATGCGATGAGATTGATCCAGTAATATGATAGTACAAAAATCACTGTGTGTGCACTGCAGTGTTATGGCTTCTGATGCAGCGTGGCTTCTCGGCAACTGCATCACATGGCTGGTTCTGTAGCGTGGCTTCTCGCCAACTGCATCACAGTGTGCTTGTGTTGGTCTCGCGGTCTCAACCTGTATTTTTTTGGGACATTTTGAAGGCTCATTTTTAG mRNA sequence ATGGAGACACGTAAACCCAATCAATTTGTCAATATGTGGCGTGAGTCGGCTGGTGCACCAGTTTCCTGTTTAGCCTCATCAGTGTTATGGCTTCTGATGCAGCGTGGCTTCTCGGCAACTGCATCACATGGCTGGTTCTGTAGCGTGGCTTCTCGCCAACTGCATCACAGTGTGCTTGTGTTGGTCTCGCGGTCTCAACCTGTATTTTTTTGGGACATTTTGAAGGCTCATTTTTAG Coding sequence (CDS) ATGGAGACACGTAAACCCAATCAATTTGTCAATATGTGGCGTGAGTCGGCTGGTGCACCAGTTTCCTGTTTAGCCTCATCAGTGTTATGGCTTCTGATGCAGCGTGGCTTCTCGGCAACTGCATCACATGGCTGGTTCTGTAGCGTGGCTTCTCGCCAACTGCATCACAGTGTGCTTGTGTTGGTCTCGCGGTCTCAACCTGTATTTTTTTGGGACATTTTGAAGGCTCATTTTTAG Protein sequence METRKPNQFVNMWRESAGAPVSCLASSVLWLLMQRGFSATASHGWFCSVASRQLHHSVLVLVSRSQPVFFWDILKAHF
Homology
BLAST of Carg02265 vs. NCBI nr
Match: KAG7016153.1 (hypothetical protein SDJN02_21257, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query: 1 METRKPNQFVNMWRESAGAPVSCLASSVLWLLMQRGFSATASHGWFCSVASRQLHHSVLV 60
METRKPNQFVNMWRESAGAPVSCLASSVLWLLMQRGFSATASHGWFCSVASRQLHHSVLV
Sbjct: 1 METRKPNQFVNMWRESAGAPVSCLASSVLWLLMQRGFSATASHGWFCSVASRQLHHSVLV 60
Query: 61 LVSRSQPVFFWDILKAHF 79
LVSRSQPVFFWDILKAHF
Sbjct: 61 LVSRSQPVFFWDILKAHF 78
BLAST of Carg02265 vs. NCBI nr
Match: KAG6578600.1 (LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18 Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 24 LASSVLWLLMQRGFSATASHGWFCSVASRQLHHSVLVLVSRSQPVFFWDILKAHF 79
L + + W LMQRGFS TASHGWFCSVASRQLHHSVLVLVSRSQPVFFWDILKAHF
Sbjct: 421 LGNCITW-LMQRGFSPTASHGWFCSVASRQLHHSVLVLVSRSQPVFFWDILKAHF 474
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG7016153.1 | 1.3e-37 | 100.00 | hypothetical protein SDJN02_21257, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6578600.1 | 3.9e-18 | 87.27 | LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. sororia... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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