Carg02259 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02259
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 1513782 .. 1514336 (+)
RNA-Seq ExpressionCarg02259
SyntenyCarg02259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGGCCGCTGTGGTTATAAAACGGACCAAGATATTGGGCCTCTCAAACAATTCCTCAGCCCTAAATCCCTCTACCCTTATACGACGTCGTTGGCGGTAACACTATCGATCTGGAGCTTTATCATCGTCCATGTAACGACTTCGCGGTATTTCGCTTCTGGTTCTGGACCTTTGGGTTCGACCGTTGCAAAACTGAAGAAGTTGGTATCGATTTAACGCAGTTCCCTCCCGATCGGATTAGAAACTTTTCTATAATCGCTCATGTGGATCACGGCAAGTTTACACTGGCTGATCGACTTTTGGAGCTCACTGGTACTATTAAGCGAGGCCATGGTCGGCCTCTATACCTCGATAAGTTGCAGGTTCGTTGGCCATGCTTAGCGACTTTTATTGTACTATGATTACTTGCTTACACTTTCGTATTGTCGCCAACTTTTGTTGAAGAAATTGTGTTTGTGTAGGTCTATTGTCAAATTAACAAGGAAAACTATGTTTGCCAAAGTCGTTATTTCCTAATTTTCTTCATGATTTCGCTGAATCTGTTGAGAAATTAG

mRNA sequence

AATGGGCCGCTGTGGTTATAAAACGGACCAAGATATTGGGCCTCTCAAACAATTCCTCAGCCCTAAATCCCTCTACCCTTATACGACGTCGTTGGCGGTAACACTATCGATCTGGAGCTTTATCATCGTCCATGTAACGACTTCGCGGTATTTCGCTTCTGGTTCTGGACCTTTGGGTTCGACCGTTGCAAAACTGAAGAAGTTGGTATCGATTTAACGCAGTTCCCTCCCGATCGGATTAGAAACTTTTCTATAATCGCTCATGTGGATCACGGCAAGTTTACACTGGCTGATCGACTTTTGGAGCTCACTGGTACTATTAAGCGAGGCCATGGTCGGCCTCTATACCTCGATAAGTTGCAGGTCTATTGTCAAATTAACAAGGAAAACTATGTTTGCCAAAGTCGTTATTTCCTAATTTTCTTCATGATTTCGCTGAATCTGTTGAGAAATTAG

Coding sequence (CDS)

ATGGGCCGCTGTGGTTATAAAACGGACCAAGATATTGGGCCTCTCAAACAATTCCTCAGCCCTAAATCCCTCTACCCTTATACGACGTCGTTGGCGGTAACACTATCGATCTGGAGCTTTATCATCGTCCATGTAACGACTTCGCGGTATTTCGCTTCTGGTTCTGGACCTTTGGGTTCGACCGTTGCAAAACTGAAGAAGTTGGTATCGATTTAA

Protein sequence

MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSRYFASGSGPLGSTVAKLKKLVSI
Homology
[Close]
BLAST of Carg02259 vs. NCBI nr
Match: KAG7016147.1 (hypothetical protein SDJN02_21251 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSRYFASGSGPLGS 60
          MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSRYFASGSGPLGS
Sbjct: 1  MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSRYFASGSGPLGS 60

Query: 61 TVAKLKKLVSI 72
          TVAKLKKLVSI
Sbjct: 61 TVAKLKKLVSI 71

[Close]
BLAST of Carg02259 vs. NCBI nr
Match: KAG6578594.1 (Translation factor GUF1-like, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 7.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSR 50
          MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSR
Sbjct: 1  MGRCGYKTDQDIGPLKQFLSPKSLYPYTTSLAVTLSIWSFIIVHVTTSR 49

The following BLAST results are available for this feature:
BLAST of Carg02259 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016147.14.8e-31100.00hypothetical protein SDJN02_21251 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6578594.17.2e-19100.00Translation factor GUF1-like, mitochondrial, partial [Cucurbita argyrosperma sub... [more]
BLAST of Carg02259 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02259 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02259 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02259-RACarg02259-RAmRNA