Carg02256 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02256
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor PRE6-like
Location	Carg_Chr15: 1499882 .. 1500531 (+)
RNA-Seq Expression	Carg02256
Synteny	Carg02256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACACCTTTCCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAACATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTACATACTCAAAATTTCTTCTCAGGGAGGGGGCACATTTTTGTTTTCAAAACCAAAAGTCCACGCTTTAATGTCCTGGTCTAGTCAATTAAAGAATTTAACACCAACATTAGTAGCTAATTACCAAGTGTTTGTTTTTTTTTTTTTTTTTTTTGTTAAATTTAAGATTTGACTTTATTATATACATGAAATTAAGCTAATTATTAGGTTTATTAATTTCTTCAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAAGAACAACGGTGTCGGGTTTGGTATTGATATATATATATATTATTATTATTTATATC

mRNA sequence

CCAACACCTTTCCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAACATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAAGAACAACGGTGTCGGGTTTGGTATTGATATATATATATATTATTATTATTTATATC

Coding sequence (CDS)

ATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAG

Protein sequence

MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

Homology

[Close]

BLAST of Carg02256 vs. NCBI nr
Match: KAG7016144.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. NCBI nr
Match: XP_022939473.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6578591.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. NCBI nr
Match: XP_022993701.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGPSRISDDQIIELLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. NCBI nr
Match: XP_038890645.1 (LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 7.0e-35
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRI+DDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-29
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Carg02256 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-29
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNL 60
          MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +S EAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Carg02256 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-28
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Carg02256 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 2  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHR 61
          S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          E DDLS+RL+QLL +ID +SP+AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Carg02256 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLH 60
          MS+R  RSR SG+SRI+D+QI DL+SKL+ L+PE R R  D+V +S+VL ETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  S +AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Carg02256 vs. ExPASy TrEMBL
Match: A0A6J1FLR3 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111445367 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. ExPASy TrEMBL
Match: A0A6J1JX29 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111489612 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGPSRISDDQIIELLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.8e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.8e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.8e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Carg02256 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNL 60
          MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +S EAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Carg02256 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Carg02256 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-29
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Carg02256 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 117.1 bits (292), Expect = 7.5e-27
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 2  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHR 61
          S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          E DDLS+RL+QLL +ID +SP+AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Carg02256 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-25
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRN 60
          MS RRSR    SG SRIS+DQI DL+ KL+QL+PE+R  RR DKVSA++VL +TCNYIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          LHREVDDLSERLS+LL+  +SD+ +AA+IRSL+ Q
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ 93

The following BLAST results are available for this feature:

BLAST of Carg02256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016144.1	2.5e-40	100.00	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022939473.1	2.1e-39	98.90	transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcriptio...	[more]
XP_022993701.1	2.3e-38	96.70	transcription factor PRE6-like [Cucurbita maxima]	[more]
XP_004151201.2	1.4e-35	92.31	transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcrip...	[more]
XP_038890645.1	7.0e-35	90.11	LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]	[more]

BLAST of Carg02256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	3.5e-29	76.09	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q8GW32	3.5e-29	73.91	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9FLE9	3.9e-28	73.91	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
Q9LXG5	1.1e-25	71.11	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
B8APB5	1.2e-24	66.30	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]

BLAST of Carg02256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLR3	1.0e-39	98.90	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111445367 PE=...	[more]
A0A6J1JX29	1.1e-38	96.70	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111489612 PE=4 ...	[more]
A0A5A7T970	6.8e-36	92.31	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	6.8e-36	92.31	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	6.8e-36	92.31	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]

BLAST of Carg02256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	2.5e-30	73.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	2.5e-30	76.09	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.7e-29	73.91	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	7.5e-27	71.11	BANQUO 2	[more]
AT1G74500.1	3.1e-25	67.37	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR46446:SF28	TRANSCRIPTION REGULATOR	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 9..74 e-value: 8.16676E-21 score: 76.1879
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 16..58 e-value: 1.5E-5 score: 24.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 3..57 score: 11.172428
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 1..83 e-value: 8.7E-10 score: 40.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 3..76
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02256-RA	Carg02256-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity