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Carg02248 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCCAGCGCCACACACGTGCTGCTATCATCGATCTCCTACTGTTCTTTCTTTTGTTTTCTACTTTGTATCTCATTTTAGTCGTTATCGTTCAATCCTCTACATTTGACGATTCTCTTCAAACCAACACCATCTTGACTGTTGCTGCTGCTCCTGCTACTGCCCCTGCTCATCTCCAATTCCATTCTTGGGAAAGTGACAAAAATTTTAAGAACCCTACAGCTTACCTCACAATGCATGGAATTAGATGGCATTGAATTAACCCATTAAAGTCGGTCTTTAAATTGGTTGGAGATTGGGATACACTTGCTAATCCACTTTAAGCATTCAATTCTCAATTAGTAAAAACTAAAGCTATTGATTCCTCAAATTAGAGTAGAAACCTACCATCTTTATTAGGAGTGTAATTCAATTGAAAAAAGTGAGGTAGGGTCAAGGACAAGAAATATAATCGGTTCTCGATCCTGTTTAACTAAGGGAGAAAAATCTTTTTTCACTCTCTCTCTCTCCTTCTCCATTTAGAAGGGAATTCTTCGGCGGATCTCGATAGGACTATCTGCCCATTAAATTGAACCAACGGTATATTAGGTCATAAAGAATGGCCATCTCTTGAGGAGGAGGAGAATGAGAAGATATGGAAGAAAGAATGGGAAAGGCATGGAATTTGTTCTGAACCATTGCTCACTCAGCATGCTTTCTTTGAAACTGCACTCAAGCTTAAGCAAACTTATGATCTCTTCAATATCCTAGCAAACAGAGGTGTGTGTTTCCAAAAAAAAAAAAAAAAGTAATGATACTAACTTGGAGAAGGCAATGCTGATGAATGGTTGTTTGTGATGCAGCGATATTTCCATTTGGAGAGGTGTATGGGTTAGAGAACATAAGTGATGCCATTAAAGCTGCGACGGGGCACACTCCACAAGTGGAATGCAAGTCATACAAACGCATCCCTCTGCTCTCCAACATCTTCCTTTGCTTCCAATACACTGCAGCATCTTCCATTCATATTGTCGACTGCCCCCTCGTAACAAGATGCAAATTCCAAGCCGTCCTTTTCCCTTATGATATTTTTGGTCCATCTTACAACTTCAAATCTACTACTTTAAACAATCCCCACTAG ATGAGCCAGCGCCACACACGTGCTGCTATCATCGATCTCCTACTGTTCTTTCTTTTGTTTTCTACTTTGTATCTCATTTTAGTCGTTATCGTTCAATCCTCTACATTTGACGATTCTCTTCAAACCAACACCATCTTGACTGTTGCTGCTGCTCCTGCTACTGCCCCTGCTCATCTCCAATTCCATTCTTGGGAAAGTCATAAAGAATGGCCATCTCTTGAGGAGGAGGAGAATGAGAAGATATGGAAGAAAGAATGGGAAAGGCATGGAATTTGTTCTGAACCATTGCTCACTCAGCATGCTTTCTTTGAAACTGCACTCAAGCTTAAGCAAACTTATGATCTCTTCAATATCCTAGCAAACAGAGCGATATTTCCATTTGGAGAGGTGTATGGGTTAGAGAACATAAGTGATGCCATTAAAGCTGCGACGGGGCACACTCCACAAGTGGAATGCAAGTCATACAAACGCATCCCTCTGCTCTCCAACATCTTCCTTTGCTTCCAATACACTGCAGCATCTTCCATTCATATTGTCGACTGCCCCCTCGTAACAAGATGCAAATTCCAAGCCGTCCTTTTCCCTTATGATATTTTTGGTCCATCTTACAACTTCAAATCTACTACTTTAAACAATCCCCACTAG ATGAGCCAGCGCCACACACGTGCTGCTATCATCGATCTCCTACTGTTCTTTCTTTTGTTTTCTACTTTGTATCTCATTTTAGTCGTTATCGTTCAATCCTCTACATTTGACGATTCTCTTCAAACCAACACCATCTTGACTGTTGCTGCTGCTCCTGCTACTGCCCCTGCTCATCTCCAATTCCATTCTTGGGAAAGTCATAAAGAATGGCCATCTCTTGAGGAGGAGGAGAATGAGAAGATATGGAAGAAAGAATGGGAAAGGCATGGAATTTGTTCTGAACCATTGCTCACTCAGCATGCTTTCTTTGAAACTGCACTCAAGCTTAAGCAAACTTATGATCTCTTCAATATCCTAGCAAACAGAGCGATATTTCCATTTGGAGAGGTGTATGGGTTAGAGAACATAAGTGATGCCATTAAAGCTGCGACGGGGCACACTCCACAAGTGGAATGCAAGTCATACAAACGCATCCCTCTGCTCTCCAACATCTTCCTTTGCTTCCAATACACTGCAGCATCTTCCATTCATATTGTCGACTGCCCCCTCGTAACAAGATGCAAATTCCAAGCCGTCCTTTTCCCTTATGATATTTTTGGTCCATCTTACAACTTCAAATCTACTACTTTAAACAATCCCCACTAG MSQRHTRAAIIDLLLFFLLFSTLYLILVVIVQSSTFDDSLQTNTILTVAAAPATAPAHLQFHSWESHKEWPSLEEEENEKIWKKEWERHGICSEPLLTQHAFFETALKLKQTYDLFNILANRAIFPFGEVYGLENISDAIKAATGHTPQVECKSYKRIPLLSNIFLCFQYTAASSIHIVDCPLVTRCKFQAVLFPYDIFGPSYNFKSTTLNNPH Homology
BLAST of Carg02248 vs. NCBI nr
Match: KAG7016136.1 (Ribonuclease 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 431.4 bits (1108), Expect = 4.5e-117 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of Carg02248 vs. NCBI nr
Match: KAG6578582.1 (Ribonuclease 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 312.0 bits (798), Expect = 4.0e-81 Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0
BLAST of Carg02248 vs. NCBI nr
Match: XP_022939131.1 (ribonuclease 1-like [Cucurbita moschata]) HSP 1 Score: 308.5 bits (789), Expect = 4.4e-80 Identity = 147/150 (98.00%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Carg02248 vs. NCBI nr
Match: XP_023550124.1 (ribonuclease 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 308.5 bits (789), Expect = 4.4e-80 Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Carg02248 vs. NCBI nr
Match: XP_022993703.1 (ribonuclease 1-like, partial [Cucurbita maxima]) HSP 1 Score: 300.1 bits (767), Expect = 1.6e-77 Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.5e-17 Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy Swiss-Prot
Match: P42815 (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16 Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2) HSP 1 Score: 86.7 bits (213), Expect = 3.6e-16 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy Swiss-Prot
Match: P83618 (Ribonuclease-like storage protein OS=Panax ginseng OX=4054 PE=1 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12 Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy Swiss-Prot
Match: B8XY56 (Ribonuclease T2 OS=Danio rerio OX=7955 GN=rnaset2 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 9.1e-12 Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy TrEMBL
Match: A0A6J1FF23 (ribonuclease 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445130 PE=3 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 2.1e-80 Identity = 147/150 (98.00%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy TrEMBL
Match: A0A6J1K331 (ribonuclease 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489614 PE=3 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 7.6e-78 Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy TrEMBL
Match: A0A6J1C1D3 (ribonuclease 1-like OS=Momordica charantia OX=3673 GN=LOC111006533 PE=3 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 8.7e-66 Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy TrEMBL
Match: A0A0A0KSB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636550 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 7.9e-59 Identity = 110/138 (79.71%), Postives = 123/138 (89.13%), Query Frame = 0
BLAST of Carg02248 vs. ExPASy TrEMBL
Match: A0A1S3C9W2 (ribonuclease 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498487 PE=3 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 1.1e-57 Identity = 108/138 (78.26%), Postives = 121/138 (87.68%), Query Frame = 0
BLAST of Carg02248 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein ) HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20 Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 0
BLAST of Carg02248 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 ) HSP 1 Score: 90.5 bits (223), Expect = 1.8e-18 Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 0
BLAST of Carg02248 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 ) HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17 Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 0
BLAST of Carg02248 vs. TAIR 10
Match: AT1G14210.1 (Ribonuclease T2 family protein ) HSP 1 Score: 78.6 bits (192), Expect = 6.9e-15 Identity = 43/122 (35.25%), Postives = 58/122 (47.54%), Query Frame = 0
BLAST of Carg02248 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 ) HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05 Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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