Carg02245 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02245
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L34e superfamily protein
Location	Carg_Chr15: 1449080 .. 1449646 (+)
RNA-Seq Expression	Carg02245
Synteny	Carg02245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCCTCATCGACTTGTTCGAAATTTCCCGTTTGTCATCGGTCTCGATCGGCCGTCATCGATATTGTGATTTTGATTGCTGTCGTTGGTGCTTGTGGGTTTTTGTTATTCCCTTATATGAAGCTTCTTATTGTTGAATCCCTCGAGATTTTCGGTGCGATTCTGTATTTAATGGGAGATGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTGGGATTTTCTGTGCTTTATTAGCTGCTTGGGTTGTTTTAATATGCACGAGCAGGAAATGTGGAAATCCCTATTGCAAGGGGCTTCGAAAGGCGGCTGAATTCGACATCCAATTGGAGACAGAGGAGTGCGTGAAGAACTCTACTCCAGTGGTTAAAAATGGCGTGAAGAAGGGGCTTTTTGAATTGCCCCGTGATCATCACCGCGAGTTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGGGCAGTGCTCATATTTCGAGCAAGATGTGGCTGTTCTGTTGGTAGGTTGGAAGTTCCTGGGTCTAGGAAGCAGCTGAAGAAGATCAAGAAATAG

mRNA sequence

ATGACTCCCTCATCGACTTGTTCGAAATTTCCCGTTTGTCATCGGTCTCGATCGGCCGTCATCGATATTGTGATTTTGATTGCTGTCGTTGGTGCTTGTGGGTTTTTGTTATTCCCTTATATGAAGCTTCTTATTGTTGAATCCCTCGAGATTTTCGGTGCGATTCTGTATTTAATGGGAGATGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTGGGATTTTCTGTGCTTTATTAGCTGCTTGGGTTGTTTTAATATGCACGAGCAGGAAATGTGGAAATCCCTATTGCAAGGGGCTTCGAAAGGCGGCTGAATTCGACATCCAATTGGAGACAGAGGAGTGCGTGAAGAACTCTACTCCAGTGGTTAAAAATGGCGTGAAGAAGGGGCTTTTTGAATTGCCCCGTGATCATCACCGCGAGTTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGGGCAGTGCTCATATTTCGAGCAAGATGTGGCTGTTCTGTTGGTAGGTTGGAAGTTCCTGGGTCTAGGAAGCAGCTGAAGAAGATCAAGAAATAG

Coding sequence (CDS)

ATGACTCCCTCATCGACTTGTTCGAAATTTCCCGTTTGTCATCGGTCTCGATCGGCCGTCATCGATATTGTGATTTTGATTGCTGTCGTTGGTGCTTGTGGGTTTTTGTTATTCCCTTATATGAAGCTTCTTATTGTTGAATCCCTCGAGATTTTCGGTGCGATTCTGTATTTAATGGGAGATGAAGTCTCTCGTGCTCCTTGGATTTATGGATCCATTGGACTTGGGATTTTCTGTGCTTTATTAGCTGCTTGGGTTGTTTTAATATGCACGAGCAGGAAATGTGGAAATCCCTATTGCAAGGGGCTTCGAAAGGCGGCTGAATTCGACATCCAATTGGAGACAGAGGAGTGCGTGAAGAACTCTACTCCAGTGGTTAAAAATGGCGTGAAGAAGGGGCTTTTTGAATTGCCCCGTGATCATCACCGCGAGTTAGAAGCTGAACTTAAGAAGATGGCACCTCCTAATGGAAGGGCAGTGCTCATATTTCGAGCAAGATGTGGCTGTTCTGTTGGTAGGTTGGAAGTTCCTGGGTCTAGGAAGCAGCTGAAGAAGATCAAGAAATAG

Protein sequence

MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMGDEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSRKQLKKIKK

Homology

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BLAST of Carg02245 vs. NCBI nr
Match: KAG6578578.1 (hypothetical protein SDJN03_23026, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.2 bits (975), Expect = 1.0e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR
Sbjct: 158 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

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BLAST of Carg02245 vs. NCBI nr
Match: KAG7016133.1 (hypothetical protein SDJN02_21237, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.2 bits (975), Expect = 1.0e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR
Sbjct: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 181 KQLKKIKK 188

[Close]

BLAST of Carg02245 vs. NCBI nr
Match: XP_022938995.1 (uncharacterized protein At5g19025-like [Cucurbita moschata] >XP_022938997.1 uncharacterized protein At5g19025-like [Cucurbita moschata])

HSP 1 Score: 378.3 bits (970), Expect = 4.0e-101
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. NCBI nr
Match: XP_023551693.1 (uncharacterized protein At5g19025-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 8.9e-101
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. NCBI nr
Match: XP_022993668.1 (uncharacterized protein At5g19025-like [Cucurbita maxima])

HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELP DHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPCDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

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BLAST of Carg02245 vs. ExPASy Swiss-Prot
Match: P0C8Q9 (Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 PE=2 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 77/213 (36.15%), Postives = 108/213 (50.70%), Query Frame = 0


Query: 5   STCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGA---------- 64
           ++ S   +C  S SA +D++ILI V+ +  FLL  Y   LI  SL +  +          
Sbjct: 35  NSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLI-HSLSLLSSHFPSITISLS 94

Query: 65  ------ILYLMGDEVSR-----------APWIYGSIGLGIFCALLAAWVVLIC--TSRKC 124
                 I++   D  +             P         +F A   A++ L C   SRKC
Sbjct: 95  SLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFAFAVFFAASIAFLDLCCGSRSRKC 154

Query: 125 GNPYCKGLRKAAEFDIQLETEECVKN-STPVVKNGVKKGLFELPRDHHRELEAELKKMAP 184
            NP CKG++KA EFD+QL+TEECVK+ S   +     KG  E   D+   L AEL+KMAP
Sbjct: 155 RNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSESNPDYEC-LRAELRKMAP 214

Query: 185 PNGRAVLIFRARCGCSVGRLEVPGSRKQLKKIK 188
            NGRAVLIFR++CGC + +LE  G ++  +  K
Sbjct: 215 VNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245

[Close]

BLAST of Carg02245 vs. ExPASy TrEMBL
Match: A0A6J1FFK9 (uncharacterized protein At5g19025-like OS=Cucurbita moschata OX=3662 GN=LOC111445040 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.9e-101
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. ExPASy TrEMBL
Match: A0A6J1K2Z1 (uncharacterized protein At5g19025-like OS=Cucurbita maxima OX=3661 GN=LOC111489591 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.6e-100
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG
Sbjct: 38  MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELP DHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPCDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. ExPASy TrEMBL
Match: A0A0A0KVL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636590 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           MT SSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKL+IVESLEIFGAILYLMG
Sbjct: 38  MTASSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           +EVSRAPWIYGSIGL IFCA LAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  EEVSRAPWIYGSIGLSIFCASLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. ExPASy TrEMBL
Match: A0A5D3CWE1 (Putative Ribosomal protein L34e superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00180 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 180/188 (95.74%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           M  SSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKL+IVESLEIFGAILYLMG
Sbjct: 38  MPASSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           +EVSRAPWIYGSIGL IFCA LAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  EEVSRAPWIYGSIGLSIFCASLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. ExPASy TrEMBL
Match: A0A1S3CAF3 (uncharacterized protein At5g19025 OS=Cucumis melo OX=3656 GN=LOC103498491 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 180/188 (95.74%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MTPSSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMG 60
           M  SSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKL+IVESLEIFGAILYLMG
Sbjct: 38  MPASSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMG 97

Query: 61  DEVSRAPWIYGSIGLGIFCALLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 120
           +EVSRAPWIYGSIGL IFCA LAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK
Sbjct: 98  EEVSRAPWIYGSIGLSIFCASLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVK 157

Query: 121 NSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSR 180
           NSTP+VKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPG R
Sbjct: 158 NSTPLVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPR 217

Query: 181 KQLKKIKK 189
           KQLKKIKK
Sbjct: 218 KQLKKIKK 225

[Close]

BLAST of Carg02245 vs. TAIR 10
Match: AT3G01170.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 244.6 bits (623), Expect = 6.4e-65
Identity = 120/186 (64.52%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 4   SSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMGDEV 63
           S TCSKFPVC  S+SA ID+VILIAV+ ACGFL FPY+KL+ ++S+E+F  +  L+  E+
Sbjct: 36  SPTCSKFPVCDGSQSAAIDVVILIAVITACGFLFFPYVKLITLKSIEVFSDLSLLVKQEI 95

Query: 64  SRAPWIYGSIGLGIFCALLAAW-VVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNS 123
            + P +YGS+ L IFCA ++ W V+L+CT ++CG P CKGLRKA EFDIQLETEECVK+S
Sbjct: 96  LQNPIVYGSLALSIFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSS 155

Query: 124 TPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGSRKQ 183
           +       K+G+FELPR HHRELEAELKKMAPPNGRAVL+FRARCGCSV RL V G +KQ
Sbjct: 156 SN------KRGMFELPRVHHRELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQ 215

Query: 184 LKKIKK 189
            +KIKK
Sbjct: 216 QRKIKK 215

[Close]

BLAST of Carg02245 vs. TAIR 10
Match: AT5G15260.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-58
Identity = 121/194 (62.37%), Postives = 148/194 (76.29%), Query Frame = 0


Query: 4   SSTCSKFPV-CHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGAILYLMGDE 63
           SS  S F V C  SRSA ID+VILIAV+ + GFL+FPY+K + ++S+EIF  +  L+ +E
Sbjct: 42  SSCSSNFSVCCDGSRSAAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEE 101

Query: 64  VSR--APWIYGSIGLGIFCALLAAW--VVLICTSRKCGNPYCKGLRKA-AEFDIQLETEE 123
           + R   P +YG I L I C  L+AW  V+L+C+  +CG P CKGLRKA AEFDIQLETE+
Sbjct: 102 ILRNPDPIVYGLIALSISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETED 161

Query: 124 CVKNSTPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVP 183
           CVK+S    K+  KKGLFELPRDHHRELEAELKKMAPPNGRAVL+FRA+CGCSVGRLEVP
Sbjct: 162 CVKSSNS-GKSVSKKGLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVP 221

Query: 184 GSRK---QLKKIKK 189
           G +K   Q +K+KK
Sbjct: 222 GPKKQQLQQRKVKK 234

[Close]

BLAST of Carg02245 vs. TAIR 10
Match: AT3G06180.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 0


Query: 4   SSTCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKL------LIVESLEIFGAILY 63
           SS+ S   +C  S SA +D++ILI V+ +  FLL  Y         L+        ++++
Sbjct: 36  SSSSSSLHLCKHSPSATLDLLILILVLFSGAFLLSSYFSYLFHSFSLLSSHFPSLSSLIF 95

Query: 64  LMGDEVSRAPWIYGSIGLGIFCALLAAWVVLIC--TSRKCGNPYCKGLRKAAEFDIQLET 123
              +++S  P         +F A   A++ L C   SRKC NP CKGL+KA EFD+QL+T
Sbjct: 96  SDDEDLSSIPPASYFFAFAVFFAASIAFLDLCCGPRSRKCRNPKCKGLKKAMEFDLQLQT 155

Query: 124 EECVKN-STPVVKNGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRL 182
           EECVK+ +T  +     KG  E   D+   L AEL++MAPPNGRAVL+FR+RCGC V +L
Sbjct: 156 EECVKSGATKEIDRLPWKGGSESNPDYEC-LRAELRRMAPPNGRAVLLFRSRCGCPVAKL 215

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BLAST of Carg02245 vs. TAIR 10
Match: AT5G19025.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 77/213 (36.15%), Postives = 108/213 (50.70%), Query Frame = 0


Query: 5   STCSKFPVCHRSRSAVIDIVILIAVVGACGFLLFPYMKLLIVESLEIFGA---------- 64
           ++ S   +C  S SA +D++ILI V+ +  FLL  Y   LI  SL +  +          
Sbjct: 35  NSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLI-HSLSLLSSHFPSITISLS 94

Query: 65  ------ILYLMGDEVSR-----------APWIYGSIGLGIFCALLAAWVVLIC--TSRKC 124
                 I++   D  +             P         +F A   A++ L C   SRKC
Sbjct: 95  SLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFAFAVFFAASIAFLDLCCGSRSRKC 154

Query: 125 GNPYCKGLRKAAEFDIQLETEECVKN-STPVVKNGVKKGLFELPRDHHRELEAELKKMAP 184
            NP CKG++KA EFD+QL+TEECVK+ S   +     KG  E   D+   L AEL+KMAP
Sbjct: 155 RNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSESNPDYEC-LRAELRKMAP 214

Query: 185 PNGRAVLIFRARCGCSVGRLEVPGSRKQLKKIK 188
            NGRAVLIFR++CGC + +LE  G ++  +  K
Sbjct: 215 VNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245

The following BLAST results are available for this feature:

BLAST of Carg02245 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578578.1	1.0e-101	100.00	hypothetical protein SDJN03_23026, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016133.1	1.0e-101	100.00	hypothetical protein SDJN02_21237, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938995.1	4.0e-101	99.47	uncharacterized protein At5g19025-like [Cucurbita moschata] >XP_022938997.1 unch...	[more]
XP_023551693.1	8.9e-101	98.94	uncharacterized protein At5g19025-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993668.1	7.5e-100	98.40	uncharacterized protein At5g19025-like [Cucurbita maxima]	[more]

BLAST of Carg02245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8Q9	1.9e-21	36.15	Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 P...	[more]

BLAST of Carg02245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFK9	1.9e-101	99.47	uncharacterized protein At5g19025-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1K2Z1	3.6e-100	98.40	uncharacterized protein At5g19025-like OS=Cucurbita maxima OX=3661 GN=LOC1114895...	[more]
A0A0A0KVL2	5.8e-98	96.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636590 PE=4 SV=1	[more]
A0A5D3CWE1	2.9e-97	95.74	Putative Ribosomal protein L34e superfamily protein OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CAF3	2.9e-97	95.74	uncharacterized protein At5g19025 OS=Cucumis melo OX=3656 GN=LOC103498491 PE=4 S...	[more]

BLAST of Carg02245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01170.1	6.4e-65	64.52	Ribosomal protein L34e superfamily protein	[more]
AT5G15260.1	2.6e-58	62.37	Ribosomal protein L34e superfamily protein	[more]
AT3G06180.1	1.4e-27	40.64	Ribosomal protein L34e superfamily protein	[more]
AT5G19025.1	1.4e-22	36.15	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46996:SF4	BNAC09G54710D PROTEIN	coord: 4..188
None	No IPR available	PANTHER	PTHR46996	OS05G0488500 PROTEIN	coord: 4..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02245-RA	Carg02245-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane