Carg02216 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02216
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 1318258 .. 1320561 (-)
RNA-Seq ExpressionCarg02216
SyntenyCarg02216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCAAAGGTACAAGTAGCATCCTTGTTTTCGAGTTCTGTTCAGGTACACAGTACAGATCACTAGGCCATCTAGGAACATCCAGGTCTTGGAAGTTAGAATAGAAAATGCAAAATGCAAAGGATAAGTGCTAAGTTCCAAACACTGCAGCCTAGCAGGAAATAATTGATACACACAAATAATCAAAATGATAGCAGAAACAAGAAACCAGAAAGCCATGTTGGCATGGCGTTTCAGTACATCATTAAACAGCAATTGATGTGAAACCAGCAAACCACTACTGTCATGGAATAGAAACTTGGCTACAGTTATGTCTACATTAGCATGGTGGTCACAGGTCGCCAACACGTTCTAGAGTCCAAGATAAAGTAAAATGAAGATATAAAAGGGAGAATCTTTCTATAATTTTTAGTAGGACCTTGGGTGGAAGAATTGAGATTTAATCAATAAAAGAAATTTGAAATTTTAAGCTCCACAGAGAGGTTTCTATAATCGTGCAATACATAACCTAAACCAAAACTTTCAGAAGTATGTCTGATTACTCCCATGAGCAAAGCAAAAGCCAAAGTGAGAAAGAAAACAGCCATTGACAGAGCTAAGACTTAAGGGTCAAGCTTCTAGTTCAAATTTCCAGGGCATACAAATTGTAAACGAGATAGTGATGGCATATATGCTAGGAAGAACAATATGAACAACAGATCCCTCTAACCAAAAAAGTTCCTAGAACATCGCAATAACTATTAGAAGTGTTTTTCCCTGATGATTCTTTCACAATGCATATGATAAACCAACCTCCTTTTCTTTTGATCTCCCTCAACTCGAAACATCGTTGATTACGATGATATTAACGTGAGGCTAGAGTTGTTCGCCCAACCTTGTCTTCATATAAAACATAAGCATACCTCAAAAATTTAGGTAAACTGGAATCTCTCCTTCCACAAAATTGAATCTTTCATTCTATAAGCTAATACCAGACAATACAATGTTAGTGATTTTCACAACCAGGAGAAACTGCATCCAGTCTCCTAAAATCCGTGTACAAAGTTCAATCGAGCAACCTAGTTACAACTGAGATAGCCCCTTGGAGTTCTCCATCAAGTCCTAAAGAATCTTCTCGACCTTCCTTTTCTTGTCATACTTCTCATCTTCTGCTACAAACCAGGACGAAGACGTCTTCACACCATTGTTTGGAACCTTCAATTCTATCCTGCTACCGACAGGCTTCTTTCCAGTTCCAATCTTAAACTGCATAGTGGATCGTCTGTTCAGAGAGAACTTTTCATCGGAATCGTACAAATTGTTCTTTATTGATTCAATAGCAGGAGCAAAAGTCTCCAGCACTGAGACATGTGTATCCACAAGACAGTTCTCCATGATAGGAACAGGATATTCTGTACTTGAATTGTTCAATATACTATCTGGAAGAACGAAAGAAGAAATTTCCTTTTCACCAAATGGCAGTGGGGGAGCAAAAAATGGGTTACTTTCTTGTGTTTGTTTGATCATAGCTGCATTTCTAGGGCCTTCTCTTTGGTATCCTTCCAATCCATGGCAAAACAACCACCTCTGCAGATTCCAGATGGATTGTTCTGCACTTTTACATGGTTTTTCTAGCTCAGTTTTAATCGTTTGAGGCTCCACTACTTCCTCCTTCACAGTGGAGGGCTCAATGTCTGCTTCAGGATCAGGGATTGCAGGCAACCAAGAAGGTATATGTTCTCCAGGAGGTTCTTCCCCAATTTGCCAAAAAGTAGGCCTCAACTTTCGCTCCTTGACAAATGGAAATTTGGGAACAGAGTAGGCAAATGGGATTTCTTCAGCTCGAGCTACATACCGAGAAATCTCTTTAGCAGTGCCGGAACTCGCGAGACAATATTCAATATCCGAAGCACCTGCAAAGCCTTGGACAGACCCCAAATCTTCCTGTGCTTTCATTATATCCAATACATTACACTCTGTTCTGCCGGCGAAGTTAGCACAGAAGTTTGCGGCCCTTCCCATGTTATGAACATACCGAGCTGCAACGTCCGCCAGTGTTTCGAGGGCAGACTGTTGAAAAGTTTGAAACCCCTCACTCTCACATATTTGGGATACAGCAATCCTAGCAAGCGCCCGTGGGAAGTCTTCACCTCCATCGCTCATATTCAAATATTCATATCAACTTATCTGCCGCAAAGATGGCAACCAAAAGCACTCGTGAATGAATTCCCCGTTCGCACTTCGCTCATCGGCGGAAAGATCAAGAAAATGAGACGAAGAAATCGCACAAGTACTTCGCTGGCGCTCATAAATCAGACTTAA

mRNA sequence

ATGAAGGCAAAGGTACAAGTAGCATCCTTGTTTTCGAGTTCTGTTCAGGAGCAAAAGTCTCCAGCACTGAGACATCTCAGTTTTAATCGTTTGAGGCTCCACTACTTCCTCCTTCACAGTGGAGGGCTCAATGTCTGCTTCAGGATCAGGGATTGCAGGCAACCAAGAAGGTATATGTTCTCCAGGAGGTTCTTCCCCAATTTGCCAAAAAGTAGGCCTCAACTTTCGCTCCTTGACAAATGGAAATTTGGGAACAGAGTAGGCAAATGGGATTTCTTCAGCTCGAGCTACATACCGAGAAATCTCTTTAGCAGTGCCGGAACTCGCGAGACAATATTCAATATCCGAAGCACCTGCAAAGCCTTGGACAGACCCCAAATCTTCCTGTGCTTTCATTATATCCAATACATTACACTCTGTTCTGCCGGCGAAGTTAGCACAGAAGTTTGCGGCCCTTCCCATGTTATGAACATACCGAGCTGCAACGTCCGCCAGTGTTTCGAGGGCAGACTGTTGAAAAGTTTGAAACCCCTCACTCTCACATATTTGGGATACAGCAATCCTAGCAAGCGCCCGTGGGAAGTCTTCACCTCCATCGCTCATATTCAAATATTCATATCAACTTATCTGCCGCAAAGATGGCAACCAAAAGCACTCGTGAATGAATTCCCCGTTCGCACTTCGCTCATCGGCGGAAAGATCAAGAAAATGAGACGAAGAAATCGCACAAGTACTTCGCTGGCGCTCATAAATCAGACTTAA

Coding sequence (CDS)

ATGAAGGCAAAGGTACAAGTAGCATCCTTGTTTTCGAGTTCTGTTCAGGAGCAAAAGTCTCCAGCACTGAGACATCTCAGTTTTAATCGTTTGAGGCTCCACTACTTCCTCCTTCACAGTGGAGGGCTCAATGTCTGCTTCAGGATCAGGGATTGCAGGCAACCAAGAAGGTATATGTTCTCCAGGAGGTTCTTCCCCAATTTGCCAAAAAGTAGGCCTCAACTTTCGCTCCTTGACAAATGGAAATTTGGGAACAGAGTAGGCAAATGGGATTTCTTCAGCTCGAGCTACATACCGAGAAATCTCTTTAGCAGTGCCGGAACTCGCGAGACAATATTCAATATCCGAAGCACCTGCAAAGCCTTGGACAGACCCCAAATCTTCCTGTGCTTTCATTATATCCAATACATTACACTCTGTTCTGCCGGCGAAGTTAGCACAGAAGTTTGCGGCCCTTCCCATGTTATGAACATACCGAGCTGCAACGTCCGCCAGTGTTTCGAGGGCAGACTGTTGAAAAGTTTGAAACCCCTCACTCTCACATATTTGGGATACAGCAATCCTAGCAAGCGCCCGTGGGAAGTCTTCACCTCCATCGCTCATATTCAAATATTCATATCAACTTATCTGCCGCAAAGATGGCAACCAAAAGCACTCGTGAATGAATTCCCCGTTCGCACTTCGCTCATCGGCGGAAAGATCAAGAAAATGAGACGAAGAAATCGCACAAGTACTTCGCTGGCGCTCATAAATCAGACTTAA

Protein sequence

MKAKVQVASLFSSSVQEQKSPALRHLSFNRLRLHYFLLHSGGLNVCFRIRDCRQPRRYMFSRRFFPNLPKSRPQLSLLDKWKFGNRVGKWDFFSSSYIPRNLFSSAGTRETIFNIRSTCKALDRPQIFLCFHYIQYITLCSAGEVSTEVCGPSHVMNIPSCNVRQCFEGRLLKSLKPLTLTYLGYSNPSKRPWEVFTSIAHIQIFISTYLPQRWQPKALVNEFPVRTSLIGGKIKKMRRRNRTSTSLALINQT
Homology
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BLAST of Carg02216 vs. NCBI nr
Match: KAG7016104.1 (hypothetical protein SDJN02_21208, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 520.8 bits (1340), Expect = 6.7e-144
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 

Query: 1   MKAKVQVASLFSSSVQEQKSPALRHLSFNRLRLHYFLLHSGGLNVCFRIRDCRQPRRYMF 60
           MKAKVQVASLFSSSVQEQKSPALRHLSFNRLRLHYFLLHSGGLNVCFRIRDCRQPRRYMF
Sbjct: 1   MKAKVQVASLFSSSVQEQKSPALRHLSFNRLRLHYFLLHSGGLNVCFRIRDCRQPRRYMF 60

Query: 61  SRRFFPNLPKSRPQLSLLDKWKFGNRVGKWDFFSSSYIPRNLFSSAGTRETIFNIRSTCK 120
           SRRFFPNLPKSRPQLSLLDKWKFGNRVGKWDFFSSSYIPRNLFSSAGTRETIFNIRSTCK
Sbjct: 61  SRRFFPNLPKSRPQLSLLDKWKFGNRVGKWDFFSSSYIPRNLFSSAGTRETIFNIRSTCK 120

Query: 121 ALDRPQIFLCFHYIQYITLCSAGEVSTEVCGPSHVMNIPSCNVRQCFEGRLLKSLKPLTL 180
           ALDRPQIFLCFHYIQYITLCSAGEVSTEVCGPSHVMNIPSCNVRQCFEGRLLKSLKPLTL
Sbjct: 121 ALDRPQIFLCFHYIQYITLCSAGEVSTEVCGPSHVMNIPSCNVRQCFEGRLLKSLKPLTL 180

Query: 181 TYLGYSNPSKRPWEVFTSIAHIQIFISTYLPQRWQPKALVNEFPVRTSLIGGKIKKMRRR 240
           TYLGYSNPSKRPWEVFTSIAHIQIFISTYLPQRWQPKALVNEFPVRTSLIGGKIKKMRRR
Sbjct: 181 TYLGYSNPSKRPWEVFTSIAHIQIFISTYLPQRWQPKALVNEFPVRTSLIGGKIKKMRRR 240

Query: 241 NRTSTSLALINQT 254
           NRTSTSLALINQT
Sbjct: 241 NRTSTSLALINQT 253

The following BLAST results are available for this feature:
BLAST of Carg02216 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016104.16.7e-144100.00hypothetical protein SDJN02_21208, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg02216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02216 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02216-RACarg02216-RAmRNA