Carg02208 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02208
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein of unknown function (DUF3317)
LocationCarg_Chr15: 1278321 .. 1278775 (-)
RNA-Seq ExpressionCarg02208
SyntenyCarg02208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTGTTCTACCCCCACCTTTTCCTAACTAATGAATCCGTGATCTGTTTTATCACTTGCAAGCATGCATAGTACCCATTTCTTTATGATTTGGATTGAAGTTGTGCTACCAGTACTATTGTCCAGGCAAATCATTATTGATGTTTACTGTTTCTTGTCCTAACTAATGAATCCGTGATCTGTTTTATCACTTCTTGTTCTCACTGTTAACCTCTTGAGTTCTCCTCATATTATTGTAGATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

mRNA sequence

ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

Coding sequence (CDS)

ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

Protein sequence

MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCSTFSSSKSEN
Homology
BLAST of Carg02208 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 7.2e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCS 60
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCS
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCS 60

Query: 61 TFSSSKSEN 70
          TFSSSKSEN
Sbjct: 61 TFSSSKSEN 69

BLAST of Carg02208 vs. NCBI nr
Match: XP_022939543.1 (uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 uncharacterized protein LOC111489112 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

BLAST of Carg02208 vs. NCBI nr
Match: KAG6578536.1 (hypothetical protein SDJN03_22984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1   MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
           MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR+
Sbjct: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 103

BLAST of Carg02208 vs. NCBI nr
Match: XP_023550233.1 (uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVV+LMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVLLMWFMFYNGSRYVNDLYKRH 54

BLAST of Carg02208 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

BLAST of Carg02208 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

BLAST of Carg02208 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

BLAST of Carg02208 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

BLAST of Carg02208 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.0e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGS+YVNDL KR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

BLAST of Carg02208 vs. ExPASy TrEMBL
Match: A0A1U8JXD8 (uncharacterized protein LOC107910167 OS=Gossypium hirsutum OX=3635 GN=LOC107910167 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.5e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKRH 54

BLAST of Carg02208 vs. TAIR 10
Match: AT1G06515.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-21
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L++R+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRH 54

BLAST of Carg02208 vs. TAIR 10
Match: AT1G06515.2 (Protein of unknown function (DUF3317) )

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-21
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L++R+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRH 54

BLAST of Carg02208 vs. TAIR 10
Match: AT2G30942.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-20
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFN+LV++LMWF+ YNGSRY ++L KR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKRH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7016096.17.2e-32100.00hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022939543.13.0e-2298.15uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 unchar... [more]
KAG6578536.13.0e-2298.15hypothetical protein SDJN03_22984, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023550233.16.7e-2296.30uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo][more]
XP_004141475.13.3e-2192.59uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JYU11.5e-2298.15uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112... [more]
A0A6J1FLX21.5e-2298.15uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454... [more]
A0A1S3C9L11.6e-2192.59uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=... [more]
A0A6J1BY208.0e-2194.34uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A1U8JXD87.5e-1981.48uncharacterized protein LOC107910167 OS=Gossypium hirsutum OX=3635 GN=LOC1079101... [more]
Match NameE-valueIdentityDescription
AT1G06515.16.1e-2175.93Protein of unknown function (DUF3317) [more]
AT1G06515.26.1e-2175.93Protein of unknown function (DUF3317) [more]
AT2G30942.11.0e-2075.93Protein of unknown function (DUF3317) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024512Small subunit of serine palmitoyltransferase-likePFAMPF11779SPT_ssu-likecoord: 1..50
e-value: 2.1E-23
score: 81.7
NoneNo IPR availablePANTHERPTHR33727OS07G0446900 PROTEINcoord: 1..61
NoneNo IPR availablePANTHERPTHR33727:SF5OS07G0446900 PROTEINcoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02208-RACarg02208-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane