Carg02165 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02165
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 979713 .. 980831 (-)
RNA-Seq Expression	Carg02165
Synteny	Carg02165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGAGAAAGAAAACGACGATAAATAATTCTGATTGGTCGGAGAGGCGAGAGAATGTGAGAGGGAGGGAGCGGCGGCGATTTCGTCGGAAGGATGAGACTGCGGCAGCAAAAATGTGCCGCGGAGCAGTGTGCAGCGGCTGGTAACAGAAGGGACGGGCCGGGTGAGAAGGGTTTAAGAGAAAAGGAAAGCTAGGATGGTTAAAATAATTTTAAAAAGAAATTAATTTAAGTTTAAATTTATTTTCAAATTCCATTTAATTTTTAACACAAAATTAGTTAAATAAAATCGTTTTTCCTCGAAAATAGTATTAAACTTAACCCAAAAAATCACCTAATTTTTAAATAAATAGAGTAAAAAAAAAAATAGAGATGAAAAATGTATTGTATATTTAGTTAGAAAGAATATTTGTAAATATTATTTTATTATTTTTATATTATTAATTTATTTAAATTTAAAGTCAACATTACAACAGCTATGTAAATTTAATGTTTAATGTTTAATTTGATGAATTTAGAAGTAAAATTTAAAAATTCAAAATTATTAATTAAATTTATTTTATATCGATTTAATAGTCAATTTATTCCATTAATTTGGGTCCAAGGTTTCCATTTATTTATTATTATTATTATTATTGAAGTAACAATAATATAATTTTATCTCACACATTTAAGCATGGCAAAATTTGTGGCTAAGCCACCAAGAATTCCAAACAATCGGTATCATTATTAAATAGCAACCGATTTTCCTCTCACAAGCTTATCAACAATTTTGGAGAACAACTAGGAGGTGGAGTGGTCCCCACGATGACGTCACCCATGTACAATCCCGGAAAACACTTCATTTTGTAATATAATAATATTTTTTTAAGTCTACGAGGCAAATTTACTAATATCTTAGGCACGTGGCAGGAATCAATTGGATTCCTTGGGTCCAGTCAACCCCGATATTTTTTTTCCCATTTTTTCCGTCTGAAAAGGAAAACGGCTCCGTCCTTTGACTTCAATCCCTCCCATAGAGCTTCTTCTTGTTCTTCTTTTGCTGCGGGATGGGCATTATTTGTCTCTTTCTCGGAGGGAATGATGAACTCAGGGCCTGGACTTATCTCTCCTTGA

mRNA sequence

ATGTTTCTGAGAAAGAAAACGACGATAAATAATTCTGATTGGTCGGAGAGGCGAGAGAATGTGAGAGGGAGGGAGCGGCGGCGATTTCGTCGGAAGGATGAGACTGCGGCAGCAAAAATGTGCCGCGGAGCAGTGTGCAGCGGCTGGAAAACGGCTCCGTCCTTTGACTTCAATCCCTCCCATAGAGCTTCTTCTTGTTCTTCTTTTGCTGCGGGATGGGCATTATTTGTCTCTTTCTCGGAGGGAATGATGAACTCAGGGCCTGGACTTATCTCTCCTTGA

Coding sequence (CDS)

ATGTTTCTGAGAAAGAAAACGACGATAAATAATTCTGATTGGTCGGAGAGGCGAGAGAATGTGAGAGGGAGGGAGCGGCGGCGATTTCGTCGGAAGGATGAGACTGCGGCAGCAAAAATGTGCCGCGGAGCAGTGTGCAGCGGCTGGAAAACGGCTCCGTCCTTTGACTTCAATCCCTCCCATAGAGCTTCTTCTTGTTCTTCTTTTGCTGCGGGATGGGCATTATTTGTCTCTTTCTCGGAGGGAATGATGAACTCAGGGCCTGGACTTATCTCTCCTTGA

Protein sequence

MFLRKKTTINNSDWSERRENVRGRERRRFRRKDETAAAKMCRGAVCSGWKTAPSFDFNPSHRASSCSSFAAGWALFVSFSEGMMNSGPGLISP

Homology

[Close]

BLAST of Carg02165 vs. NCBI nr
Match: KAG7016053.1 (hypothetical protein SDJN02_21157, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MFLRKKTTINNSDWSERRENVRGRERRRFRRKDETAAAKMCRGAVCSGWKTAPSFDFNPS 60
          MFLRKKTTINNSDWSERRENVRGRERRRFRRKDETAAAKMCRGAVCSGWKTAPSFDFNPS
Sbjct: 1  MFLRKKTTINNSDWSERRENVRGRERRRFRRKDETAAAKMCRGAVCSGWKTAPSFDFNPS 60

Query: 61 HRASSCSSFAAGWALFVSFSEGMMNSGPGLISP 94
          HRASSCSSFAAGWALFVSFSEGMMNSGPGLISP
Sbjct: 61 HRASSCSSFAAGWALFVSFSEGMMNSGPGLISP 93

The following BLAST results are available for this feature:

BLAST of Carg02165 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016053.1	2.2e-44	100.00	hypothetical protein SDJN02_21157, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02165 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02165 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02165 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02165-RA	Carg02165-RA	mRNA