Carg02162 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02162
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription elongation factor TFIIS-like
Location	Carg_Chr15: 963415 .. 964881 (+)
RNA-Seq Expression	Carg02162
Synteny	Carg02162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTTGACTCCAAATTCGTTTCTTTTGTCGATGGTACATGGATAGTGAAAATGTAAACAGCCGACTTGTTCATAAATCATACATGGTTTCTATCATAAATTAAGCCTAAATTCATTGTTTGCTCGCTTACGAATTGGTTTCATGACGAGGCGAGTTCACTCTATTTCATCTGTGTTTTTTGAGTTGTTCACATCCATATAACGAAGCCATCTATAACTTGTGACTTTTTTAAATTTTGGGGAGATAATTTATGTCTTGCTATGACCTTTTCCTGTGAAATTGAGGTCACTTTGCCAGCGTTGATAGCTCCTGTATCTTGTCTTCTTTAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCAGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGAGACTAACAAGAATAAGAAAAATGGGAACATCGACTGTAAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTCGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATTGGAAAGCGACATCTCGGGGAAAAACTCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

mRNA sequence

ATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCAGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGAGACTAACAAGAATAAGAAAAATGGGAACATCGACTGTAAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTCGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATTGGAAAGCGACATCTCGGGGAAAAACTCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Coding sequence (CDS)

ATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCAGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGAGACTAACAAGAATAAGAAAAATGGGAACATCGACTGTAAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTCGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATTGGAAAGCGACATCTCGGGGAAAAACTCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Protein sequence

MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of Carg02162 vs. NCBI nr
Match: KAG7016050.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 721.8 bits (1862), Expect = 2.9e-204
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of Carg02162 vs. NCBI nr
Match: KAG6578486.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 719.5 bits (1856), Expect = 1.5e-203
Identity = 374/375 (99.73%), Postives = 374/375 (99.73%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVSQVEQFDRNGVTSSAKFSR ESDISGKNSVKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of Carg02162 vs. NCBI nr
Match: XP_022938772.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 714.9 bits (1844), Expect = 3.6e-202
Identity = 371/375 (98.93%), Postives = 373/375 (99.47%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQNYASDLIEIWKEIVIK+TNKNKKNGNIDC+ESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVSQVEQFDRNGVTSSAKFSR ESDISGKN VKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of Carg02162 vs. NCBI nr
Match: XP_023551413.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 701.0 bits (1808), Expect = 5.4e-198
Identity = 367/376 (97.61%), Postives = 371/376 (98.67%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVS+VEQF+ NGVTSSAKFSR ESDIS KNSVKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSRVEQFNGNGVTSSAKFSRSESDISEKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKP-SSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240
           ISIEKKP SSG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 ISIEKKPSSSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGL+KP+RLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLVKPDRLINMST 300

Query: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360
           ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 361 TTFVTCVNCNNHWKFC 376
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of Carg02162 vs. NCBI nr
Match: XP_022993019.1 (transcription elongation factor TFIIS-like [Cucurbita maxima])

HSP 1 Score: 687.2 bits (1772), Expect = 8.0e-194
Identity = 363/376 (96.54%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSN-DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME+ELVELFEAAKKAADAAAAPSN DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL
Sbjct: 1   MESELVELFEAAKKAADAAAAPSNDDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60

Query: 61  RHLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKF 120
           RHLTKHPKKKIQ YASDLIEIWKEIVIKETNKNKKNGNID KE PKIGSPSAESVKVEKF
Sbjct: 61  RHLTKHPKKKIQYYASDLIEIWKEIVIKETNKNKKNGNIDSKELPKIGSPSAESVKVEKF 120

Query: 121 RKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEK 180
           RKSSSMKVERVSQVEQFDRNGV SSAKFSR ESDIS +NSVKVEKTDSVVKVERIVKEEK
Sbjct: 121 RKSSSMKVERVSQVEQFDRNGVASSAKFSRSESDISVENSVKVEKTDSVVKVERIVKEEK 180

Query: 181 RISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240
           RIS EKKP SG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 RISKEKKPLSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300

Query: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360
           ADMASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 361 TTFVTCVNCNNHWKFC 376
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of Carg02162 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 3.1e-108
Identity = 219/383 (57.18%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKK-NGNIDCKESPKIGSPSAES----- 120
           R L KHP + I++ A+DL+EIWK++VI+ET K KK  G   CKE+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 121 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVE 180
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 181 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 240
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 241 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 300
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 301 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 360
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 361 RSADEPMTTFVTCVNCNNHWKFC 376
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Carg02162 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.5e-30
Identity = 114/386 (29.53%), Postives = 174/386 (45.08%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEG------ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQNYASDLIEIWKEIV-----------IKETNKNKKNGNIDC---KESPKIGSPSA 126
             K++   A  LI  WK+++            +     KK   +DC   K    +  P  
Sbjct: 66  SNKEVVALAKVLIRNWKQLLDSPATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRK 125

Query: 127 ESVKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKV 186
           + V+  K R+ S              ++  TSS K   +E   S K+  +  +T S    
Sbjct: 126 KRVEEPKDRRDS-----------VDSKSSATSSPKRPSMERSNSSKSKAETPRTPS---- 185

Query: 187 ERIVKEEKRISIEKKPSSGPDAPP--KLTSMIKSKDAARDKIRELLFEAFSKVPSEADED 246
                          PSS   AP    L     + D+ RDK  E+L  A      +AD+D
Sbjct: 186 --------------SPSSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDD 245

Query: 247 VMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLI 306
             D     D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I
Sbjct: 246 YKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAI 305

Query: 307 KPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQ 366
               +  M+  +MASD+ +     + Q+A+ + + A     TTD F+C +C ++  TY Q
Sbjct: 306 SAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQ 349

Query: 367 LQTRSADEPMTTFVTCVNCNNHWKFC 376
           +QTRSADEPMTTFV C  C N WKFC
Sbjct: 366 VQTRSADEPMTTFVLCNECGNRWKFC 349

[Close]

BLAST of Carg02162 vs. ExPASy Swiss-Prot
Match: P23881 (Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-29
Identity = 116/383 (30.29%), Postives = 177/383 (46.21%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEG------ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQNYASDLIEIWKEIV---------IKETNKNKKNGNIDCKE-SPKIG-SPSAESV 126
             K++ + A  LI+ WK ++          +E  K KK   + C +  P+ G SP     
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPR--- 125

Query: 127 KVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERI 186
                +K       R   V+   R+  TSS K   LE   S K+ V+   T S       
Sbjct: 126 -----KKGGGEPKTRRDSVD--SRSSTTSSPKRPSLERSNSSKSKVETPTTPS------- 185

Query: 187 VKEEKRISIEKKPSSGPDAPP--KLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 246
                       PS+   AP    L     + D+ RDK  E+L  A      +A+++  D
Sbjct: 186 -----------SPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKD 245

Query: 247 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 306
                D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I PE
Sbjct: 246 YGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPE 305

Query: 307 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 366
            +  M+  +MASD+ +     + Q+A+ + + A     TTD  +C +C ++  TY Q+QT
Sbjct: 306 LIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQT 347

Query: 367 RSADEPMTTFVTCVNCNNHWKFC 376
           RSADEPMTTFV C  C N WKFC
Sbjct: 366 RSADEPMTTFVLCNECGNRWKFC 347

[Close]

BLAST of Carg02162 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-29
Identity = 112/372 (30.11%), Postives = 162/372 (43.55%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 67  K-KKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFRKSSSM 126
           K  ++   A  LI+ WK  +                 SP   +P+  S K      SS+ 
Sbjct: 66  KDDEVIALAKTLIKNWKRFL----------------ASPAPTTPNNSSAKEGSSNNSSAS 125

Query: 127 KVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKRISIEK 186
           K               TS+AK S   S ISGK+      +           +EK+ S   
Sbjct: 126 K--------------STSAAKSS---SSISGKDKSSSSSSSK--------DKEKKGSTSS 185

Query: 187 KPSSGPDAPPKLTSMIKSKDAARDKIRELLFEA--FSKVPSEADEDVMDEVNASDPIRVA 246
             +S P             DA R K RE+L  A    +VP              +P  +A
Sbjct: 186 SQTSFPSG--------GMTDAVRIKCREMLATALKIGEVPE----------GCGEPEEMA 245

Query: 247 VSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMA 306
             +E  ++  +  +    K + RS + NLKDPKNP  R   + G +  ++L  M+  +MA
Sbjct: 246 AELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMA 305

Query: 307 SDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 366
           SD+ K+  E+  ++A+ D + A      TD  KC +C +R  TY QLQTRSADEPMTTFV
Sbjct: 306 SDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFV 313

Query: 367 TCVNCNNHWKFC 376
            C  C N WKFC
Sbjct: 366 MCNECGNRWKFC 313

[Close]

BLAST of Carg02162 vs. ExPASy Swiss-Prot
Match: Q29RL9 (Transcription elongation factor A protein 1 OS=Bos taurus OX=9913 GN=TCEA1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-27
Identity = 105/381 (27.56%), Postives = 171/381 (44.88%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME+E++ +     K  D      N  GA     LD L++LK  P+T ++L ST++G  + 
Sbjct: 1   MEDEVIRI----AKKMDKMVQKKNAAGA-----LDLLKELKNIPMTLELLQSTRIGMSVN 60

Query: 61  HLTKH-PKKKIQNYASDLIEIWKEIV-----IKETNKNKKNGNIDCKESPKIGSPSAESV 120
            + K    +++ + A  LI+ WK+++      K++ + KK+  +  + SP+         
Sbjct: 61  AIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAVTSQNSPE--------- 120

Query: 121 KVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERI 180
                                            +R ES  SG  S + ++T+        
Sbjct: 121 ---------------------------------AREESSSSGNMSSRKDETN-------- 180

Query: 181 VKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEV 240
                  + +   SS P AP        + D+ R K RE+L  A         +D +   
Sbjct: 181 -------ARDTYVSSFPRAP-------STSDSVRLKCREMLAAAL-----RTGDDYI--A 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERL 300
             +D   +   +E  +++    +    K + RS + NLKD KNP+ R+ VL G I P+  
Sbjct: 241 IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLF 300

Query: 301 INMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
             M+  +MASD+ K   + + ++A+ + + A      TD F CG+C ++  TY Q+QTRS
Sbjct: 301 ARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRS 301

Query: 361 ADEPMTTFVTCVNCNNHWKFC 376
           ADEPMTTFV C  C N WKFC
Sbjct: 361 ADEPMTTFVVCNECGNRWKFC 301

[Close]

BLAST of Carg02162 vs. ExPASy TrEMBL
Match: A0A6J1FF11 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111444888 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.7e-202
Identity = 371/375 (98.93%), Postives = 373/375 (99.47%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQNYASDLIEIWKEIVIK+TNKNKKNGNIDC+ESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVSQVEQFDRNGVTSSAKFSR ESDISGKN VKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of Carg02162 vs. ExPASy TrEMBL
Match: A0A6J1JZ25 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111489165 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 3.9e-194
Identity = 363/376 (96.54%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSN-DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME+ELVELFEAAKKAADAAAAPSN DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL
Sbjct: 1   MESELVELFEAAKKAADAAAAPSNDDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60

Query: 61  RHLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKF 120
           RHLTKHPKKKIQ YASDLIEIWKEIVIKETNKNKKNGNID KE PKIGSPSAESVKVEKF
Sbjct: 61  RHLTKHPKKKIQYYASDLIEIWKEIVIKETNKNKKNGNIDSKELPKIGSPSAESVKVEKF 120

Query: 121 RKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEK 180
           RKSSSMKVERVSQVEQFDRNGV SSAKFSR ESDIS +NSVKVEKTDSVVKVERIVKEEK
Sbjct: 121 RKSSSMKVERVSQVEQFDRNGVASSAKFSRSESDISVENSVKVEKTDSVVKVERIVKEEK 180

Query: 181 RISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240
           RIS EKKP SG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 RISKEKKPLSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300

Query: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360
           ADMASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 361 TTFVTCVNCNNHWKFC 376
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of Carg02162 vs. ExPASy TrEMBL
Match: A0A6J1BWY6 (transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC111006416 PE=4 SV=1)

HSP 1 Score: 656.0 bits (1691), Expect = 9.6e-185
Identity = 342/377 (90.72%), Postives = 358/377 (94.96%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQ+YASDLIE+WKEIVIKETNKNKKNGN +CKESPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSV--VKVERIVKEE 180
           KSSSMKVERVS+VEQ DRNG TSS K+SR ES IS KN VKVEKTDS+  VK ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 181 KRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASD 240
           K+ISI+K+PSSG  APPKLTSMIKSKDAARDKIRELL EAFSKVP EADEDV+DEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

Query: 241 PIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMS 300
           P+RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRR VL+G IKPERLINMS
Sbjct: 241 PVRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRNVLVGHIKPERLINMS 300

Query: 301 TADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360
           TA+MASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP
Sbjct: 301 TAEMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360

Query: 361 MTTFVTCVNCNNHWKFC 376
           MTTFVTCVNCNNHWKFC
Sbjct: 361 MTTFVTCVNCNNHWKFC 377

[Close]

BLAST of Carg02162 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 651.4 bits (1679), Expect = 2.4e-183
Identity = 339/375 (90.40%), Postives = 353/375 (94.13%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIKETNKNKKNGN   K+SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVS+VEQFDRNG TSS K+S+ ES +S +NSVKVEKTDS+VKVER+VKE   
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKE--- 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
              EKKPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDPI
Sbjct: 181 ---EKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of Carg02162 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.2e-183
Identity = 338/375 (90.13%), Postives = 351/375 (93.60%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120
           HLTKHPKKKIQ +ASDLIE+WKEIVIKETNKNKKNGN   K+SPKIGSPS ESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180
           KSSSMKVERVS+VEQFDRNG TSS K+SR ES +S  +SVK EKTDSVVKVERIVKE   
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKE--- 180

Query: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240
              EKKPSSG  APPKLTSM+KSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 ---EKKPSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300
           RVA+SVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INM+TA
Sbjct: 241 RVAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTA 300

Query: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 376
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of Carg02162 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 393.3 bits (1009), Expect = 2.2e-109
Identity = 219/383 (57.18%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKK-NGNIDCKESPKIGSPSAES----- 120
           R L KHP + I++ A+DL+EIWK++VI+ET K KK  G   CKE+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 121 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVE 180
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 181 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 240
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 241 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 300
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 301 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 360
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 361 RSADEPMTTFVTCVNCNNHWKFC 376
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Carg02162 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-22
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 195 PKLTSMIKSKDAARDKIRELLFEAFSKVPSE-ADEDVMDEVNASDPIRVAVSVESVMFEN 254
           P  ++M K+ D+ RDK+RE+L  +  KV SE  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 255 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEE 314
            G   G  K KYRSI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 315 IEQKALF 321
           I++ A F
Sbjct: 714 IKENARF 720

[Close]

BLAST of Carg02162 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-21
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 195 PKLTSMIKSKDAARDKIRELLFEAFSKVPSE-ADEDVMDEVNASDPIRVAVSVESVMFEN 254
           P   +M K+ D+ RDK+RE+L  + +KV SE  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 255 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMAS 305
            G   G QK KYRSI+FN+ D  NPD RRKVLLG I  ERL+ M   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of Carg02162 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-13
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 195 PKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDE--VNASDPIRVAVSVESVMFE 254
           P  ++M K+ D+ RDK+ E+L  + +KV +E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 255 NWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENE 314
                         SI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 215

Query: 315 EIEQKALF 321
            I+++A F
Sbjct: 224 RIKERARF 215

[Close]

BLAST of Carg02162 vs. TAIR 10
Match: AT2G13640.1 (Transcription factor IIS family protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-09
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 3   NELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRH 62
           +E+V+LFEAAKKAAD A A     G  E SRC+DAL  L K  +T +     ++  +L  
Sbjct: 262 DEMVKLFEAAKKAADVANAKGVLSGKPEVSRCIDALSLLMKINITPKPKEPRRMMDKLEG 321

Query: 63  LTKHPKKKIQNYASDLIEIWKEIVIKETNK 92
           LTKH  +KI + AS L+ +W++ + ++  K
Sbjct: 322 LTKHKDRKICHVASALLHLWRQRIREQERK 351

The following BLAST results are available for this feature:

BLAST of Carg02162 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016050.1	2.9e-204	100.00	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6578486.1	1.5e-203	99.73	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022938772.1	3.6e-202	98.93	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]
XP_023551413.1	5.4e-198	97.61	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993019.1	8.0e-194	96.54	transcription elongation factor TFIIS-like [Cucurbita maxima]	[more]

BLAST of Carg02162 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	3.1e-108	57.18	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
Q2KI09	4.5e-30	29.53	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]
P23881	1.0e-29	30.29	Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE...	[more]
P20232	2.9e-29	30.11	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]
Q29RL9	1.2e-27	27.56	Transcription elongation factor A protein 1 OS=Bos taurus OX=9913 GN=TCEA1 PE=2 ...	[more]

BLAST of Carg02162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF11	1.7e-202	98.93	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JZ25	3.9e-194	96.54	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1BWY6	9.6e-185	90.72	transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A0A0KDH9	2.4e-183	90.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	5.2e-183	90.13	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Carg02162 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	2.2e-109	57.18	transcript elongation factor IIS	[more]
AT2G42730.1	2.1e-22	47.24	F-box family protein	[more]
AT4G18720.1	1.3e-21	52.25	Transcription factor IIS protein	[more]
AT5G42325.1	3.9e-13	37.50	Transcription factor IIS protein	[more]
AT2G13640.1	2.6e-09	41.11	Transcription factor IIS family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 335..374 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 335..373 e-value: 1.1E-19 score: 70.0
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 337..372
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 333..373 score: 14.636859
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 8..87 e-value: 5.2E-25 score: 99.1
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 205..313 e-value: 2.1E-36 score: 136.9
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 205..321 e-value: 7.1E-33 score: 113.5
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 207..330 score: 35.321613
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 190..303 e-value: 1.8E-27 score: 97.8
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 191..305
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 2..375 e-value: 1.4E-99 score: 331.5
None	No IPR available	GENE3D	2.20.25.10		coord: 304..375 e-value: 6.0E-28 score: 98.5
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..375
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..375
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 328..374 e-value: 7.05861E-30 score: 106.921
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 24..85 e-value: 4.63464E-17 score: 73.1114
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 314..373
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 1..99 e-value: 9.4E-23 score: 81.8
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 27..96
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 12..375 e-value: 1.2E-98 score: 328.4
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 36..85 e-value: 1.0E-10 score: 41.5
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 10..88 score: 20.267712

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02162-RA	Carg02162-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding