Carg02157 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02157
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL74-like
Location	Carg_Chr15: 941800 .. 942801 (+)
RNA-Seq Expression	Carg02157
Synteny	Carg02157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTATTGGTTTTTTGAGTGGCCACTGACTTGTAAGATGCTTTGAAACTTCGTTGGAATACTAAGAATTGTTTGATTCAACTCTTAAAGGATCATTGTTCATCGTTCTTTCTAGTTGAAGGCAGATCAGGAACAGAGAACACAAGGGTTTGATTGGCACATGAGTGATATGAACTTTCTATTTTCAGTCTCTCTTGTTGTTAGATTCGCTCATCAAAGAACTAAGGGGTTTTGAATTATCAAGTTTCACTGCGGAATTTCATCAAACAGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

mRNA sequence

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Coding sequence (CDS)

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Protein sequence

MGTRAFCSHGYYCLACCWVEDLKKITFGSISPAVVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPIDQIS

Homology

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BLAST of Carg02157 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 491.5 bits (1264), Expect = 4.2e-135
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MGTRAFCSHGYYCLACCWVEDLKKITFGSISPAVVLKLFAAPMAMVSDHHRPRPHRLLLD 60
           MGTRAFCSHGYYCLACCWVEDLKKITFGSISPAVVLKLFAAPMAMVSDHHRPRPHRLLLD
Sbjct: 1   MGTRAFCSHGYYCLACCWVEDLKKITFGSISPAVVLKLFAAPMAMVSDHHRPRPHRLLLD 60

Query: 61  ANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSF 120
           ANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSF
Sbjct: 61  ANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSF 120

Query: 121 ETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKC 180
           ETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKC
Sbjct: 121 ETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKC 180

Query: 181 NHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPI 240
           NHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPI
Sbjct: 181 NHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPI 240

Query: 241 DQIS 245
           DQIS
Sbjct: 241 DQIS 244

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BLAST of Carg02157 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.0 bits (1029), Expect = 7.5e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

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BLAST of Carg02157 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 2.2e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Carg02157 vs. NCBI nr
Match: KAG6578482.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399.1 bits (1024), Expect = 2.8e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRP PHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPHPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Carg02157 vs. NCBI nr
Match: XP_022993116.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 399.1 bits (1024), Expect = 2.8e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGN SASGQGEISIPIDQIS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

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BLAST of Carg02157 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-43
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 56  RLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 115
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQ-ANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 116 RRFSFETGGGTASR--------LAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGD 175
           RRF+ +     AS          AATGLKK AL+++PV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 176 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQ 211
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL  +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Carg02157 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 79  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKS 138
           N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF+        +   A G+KK 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 139 ALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSS 198
           AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDTWL SHSS
Sbjct: 93  ALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSS 152

Query: 199 CPTCRQSLFEQQSASEST 217
           CPTCRQSL E Q+ +  +
Sbjct: 153 CPTCRQSLLEHQTPANGS 168

[Close]

BLAST of Carg02157 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-41
Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 55  HRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 114
           HRLLL+++     ++GS   + YT + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 115 SRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 174
               S     GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 175 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 209
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Carg02157 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-36
Identity = 84/182 (46.15%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 60  DANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFS 119
           D + T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 120 FETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 179
            E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 180 KCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISI 239
            C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I +
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIIL 206

Query: 240 PI 241
            I
Sbjct: 216 QI 206

[Close]

BLAST of Carg02157 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-30
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 78  TNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAAT---G 137
           T+E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 138 LKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLA 197
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 198 SHSSCPTCRQSLFE--QQSASESTEADA 221
            H +CP CR  L E  Q+   + ++AD+
Sbjct: 169 QHLTCPKCRNCLVETCQKILGDFSQADS 196

[Close]

BLAST of Carg02157 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.1e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Carg02157 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.4e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGN SASGQGEISIPIDQIS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of Carg02157 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.3e-94
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 45  MVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGL 104
           M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 105 NSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPIC 164
           NSIVRCALRCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 165 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRP 224
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 225 AGNSSASGQGEISIPIDQIS 245
           AGNSSASGQGEISI +D+I+
Sbjct: 181 AGNSSASGQGEISITVDEIT 200

[Close]

BLAST of Carg02157 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.4e-91
Identity = 173/202 (85.64%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES   +AGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           R AGNSSASGQGEISI +D I+
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of Carg02157 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.1e-88
Identity = 166/192 (86.46%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           GLNSIVRCALRCSRRF+FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 223 RPAGNSSASGQG 235
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]

BLAST of Carg02157 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-44
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 56  RLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 115
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQ-ANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 116 RRFSFETGGGTASR--------LAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGD 175
           RRF+ +     AS          AATGLKK AL+++PV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 176 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQ 211
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL  +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Carg02157 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 8.9e-43
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 79  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKS 138
           N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF+        +   A G+KK 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 139 ALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSS 198
           AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDTWL SHSS
Sbjct: 93  ALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSS 152

Query: 199 CPTCRQSLFEQQSASEST 217
           CPTCRQSL E Q+ +  +
Sbjct: 153 CPTCRQSLLEHQTPANGS 168

[Close]

BLAST of Carg02157 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-42
Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 55  HRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 114
           HRLLL+++     ++GS   + YT + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 115 SRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 174
               S     GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 175 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 209
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Carg02157 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-37
Identity = 84/182 (46.15%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 60  DANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFS 119
           D + T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 120 FETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 179
            E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 180 KCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISI 239
            C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I +
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIIL 206

Query: 240 PI 241
            I
Sbjct: 216 QI 206

[Close]

BLAST of Carg02157 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-31
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 78  TNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAAT---G 137
           T+E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 138 LKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLA 197
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 198 SHSSCPTCRQSLFE--QQSASESTEADA 221
            H +CP CR  L E  Q+   + ++AD+
Sbjct: 169 QHLTCPKCRNCLVETCQKILGDFSQADS 196

The following BLAST results are available for this feature:

BLAST of Carg02157 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016045.1	4.2e-135	100.00	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023550807.1	7.5e-108	100.00	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_022938777.1	2.2e-107	99.50	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
KAG6578482.1	2.8e-107	99.50	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022993116.1	2.8e-107	99.50	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of Carg02157 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	6.7e-43	58.28	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.3e-41	60.14	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	2.8e-41	57.14	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	1.6e-36	46.15	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	3.8e-30	45.27	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Carg02157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF16	1.1e-107	99.50	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	1.4e-107	99.50	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A5D3BXT6	2.3e-94	88.50	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	1.4e-91	85.64	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1BZW4	4.1e-88	86.46	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of Carg02157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	4.7e-44	58.28	RING/U-box superfamily protein	[more]
AT5G05280.1	8.9e-43	60.14	RING/U-box superfamily protein	[more]
AT5G01880.1	2.0e-42	57.14	RING/U-box superfamily protein	[more]
AT1G49230.1	1.1e-37	46.15	RING/U-box superfamily protein	[more]
AT1G49220.1	2.7e-31	45.27	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 161..202 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 160..203 e-value: 3.2E-13 score: 49.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 161..203 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 125..208 e-value: 2.0E-22 score: 80.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..244
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 55..225
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 55..225
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 160..203 e-value: 4.23952E-16 score: 68.0973
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 155..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02157-RA	Carg02157-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane