Carg02154 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02154
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S26
Location	Carg_Chr15: 928005 .. 928829 (-)
RNA-Seq Expression	Carg02154
Synteny	Carg02154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACCTGATCTCTCACCACTCTGCTTCGATCCTTCGTTTTCGGTTAATAATTTTCTTGACAATCTCTCTTTTGGTTCAGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGTACCTAGGGTTTTCTTTTTCCTCTTTCGCTGTTCAATCTATTCGTATATCTTTGGCGTCGACGTTGCTCTCTTTTTTTATCTATATCTGCTAAACAATATATAGCCATCTGAAATTCTTTCGCGACGCATTTACAATTTAGTAACTACGGATTTCGTCACATCATTGAACTAAAAAGCGAGCAATTCACCGCCGATTTTTTACTCTTCCTGTGTCGTTGTTGGTATTCTTGGTCTATTTTGTGTTCCAAAGGCTGAGACTCATCAAATGCAATTATCTTTGGGATTTTTGTTCACTGTTTGGTACAGAGTATCTAATTATGTGATCTCTTATTGGCTTGAATAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCGTATGAGCCTTTTTCTTGAACGCGTTCTTTATTTGTCTTCCATTTTAACAATTCGAGTGTAATTTCGATATTTGTTTTGTTTCAGAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

mRNA sequence

ATGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Coding sequence (CDS)

ATGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR

Homology

[Close]

BLAST of Carg02154 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 217.6 bits (553), Expect = 5.0e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.6 bits (553), Expect = 5.0e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. NCBI nr
Match: KAG7016042.1 (40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 5.0e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. NCBI nr
Match: KEH28477.1 (40S ribosomal S26-like protein [Medicago truncatula])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. NCBI nr
Match: XP_003617941.2 (40S ribosomal protein S26-3 [Medicago truncatula] >AAD47346.1 ribosomal protein S26 [Pisum sativum] >AET00900.2 40S ribosomal S26-like protein [Medicago truncatula] >AFK34454.1 unknown [Medicago truncatula] >AFK35543.1 unknown [Medicago truncatula] >RHN58099.1 putative ribosomal protein S26e [Medicago truncatula])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.5e-47
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg02154 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of Carg02154 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg02154 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 105
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of Carg02154 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.9e-37
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 105
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R+PP RF +R
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of Carg02154 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. ExPASy TrEMBL
Match: I3S2G2 (40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. ExPASy TrEMBL
Match: A0A072UFL4 (40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg02154 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.8e-48
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg02154 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-47
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg02154 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-47
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of Carg02154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134511.1	5.0e-53	100.00	40S ribosomal protein S26-1-like [Momordica charantia]	[more]
XP_022939944.1	5.0e-53	100.00	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso...	[more]
KAG7016042.1	5.0e-53	100.00	40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KEH28477.1	1.5e-52	99.05	40S ribosomal S26-like protein [Medicago truncatula]	[more]
XP_003617941.2	1.5e-52	99.05	40S ribosomal protein S26-3 [Medicago truncatula] >AAD47346.1 ribosomal protein ...	[more]

BLAST of Carg02154 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	9.5e-47	86.67	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	3.6e-46	85.71	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	3.6e-46	85.71	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	1.4e-45	82.69	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	6.9e-37	71.15	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Carg02154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0V7	2.4e-53	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1BXZ8	2.4e-53	100.00	40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV...	[more]
A0A6J1FIL8	2.4e-53	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=...	[more]
I3S2G2	7.1e-53	99.05	40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=2 SV=1	[more]
A0A072UFL4	7.1e-53	99.05	40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=3 SV=1	[more]

BLAST of Carg02154 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	6.8e-48	86.67	Ribosomal protein S26e family protein	[more]
AT2G40510.1	2.6e-47	85.71	Ribosomal protein S26e family protein	[more]
AT2G40590.1	2.6e-47	85.71	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..104 e-value: 3.3E-54 score: 181.9
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..105
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..105 e-value: 1.1E-56 score: 192.2
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02154-RA	Carg02154-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome