Carg02133 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02133
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 845043 .. 847070 (-)
RNA-Seq ExpressionCarg02133
SyntenyCarg02133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTTTGGCCTTCAATGACCCATCTGCGGCCAAGCTTTGTAGAGAAGGGATACTTCGAGGATTTAGCAACAAGCGCCTTCCAACTTCCTCTCCTCCATCCTTGCACAGCCCCAATAACAGTGTAATTGAACTCTCTTTCCCTTTTGGAGATCCAAATCTTAAAAGATCAATGAGCGAAGGCACTAAAACTCTACTGTTTCTTATCTCCTGCAGCCCTTCTGAGCAACCCATAACCAGGGAGAGCGCCTGCAAGGCTTCATCTGTTATGCCTGCCTTGTCATCTGTTAGCAAGTCAATCAGCAATGGGACTGCCCCAGAAACTACGATACAAGCTTTGTTGGCACTGTAAAGTGCTAGATTGCAAAGTGCAGTGGTGGCATCTCGCTTCCCGACTGGATTGCCGTCCTTCAGGAGCCTCACCAATGCTGGTATGGCTTTCGGACTCGCCCCTATTGTTATTTTGAACTCGTCTACCATGGTTAGGCTAAATAATGTTGCTGCAGCATTTTCTCTTGCTTCCATCGTTTTCCCTGATTCTAAGATGTGTGTTATGTTGTCTATCGCCCCTGCTGCCACTATCAGGATCTTGTTGTTGTTGAAGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCGATCCTTGGATCACCGGATTTCAACAGCGTCACCAGAAACGGTATTGCTCCTGCTTCGGCAATCATCCTTCGGTTATCCATTCCACTTTTCGCTAGTAACCGGAGTTCATATGCAGCTTGTCTTTGAATATCTGGTGACCCTGTTGCAAGTTTTCCCACCAGAAACTCGGCTGTCATTTTGACAGTGTCGGAAGCTGCTTTGGATGCAGAAATGTGATCGATCGGTTCATCAGAAGGGTAACTTTTTCTGTTGCTTCTCTCCAACTCGTAGGAAGAAGAATATGGTTTTTTAGGTTCATTCATACTAATGTTGTTTTCTTGGCACCACTGTTGCATCAAACTCTTGAGTGCATAATTTGGTATGAGGGCCATATGAATTAGCCTCTGATTACTCTTGGGACATACATGATGCCCTGAGTCAATCCATTGGGCTATTGAATAGCGATCGTAAGTATGTCCGGACGATACAATTACAGGGTCTCTCATGAAATCTAGTGAAATGGGGCAGCGAAAATCGTCTGGAATTGGAATCAATGATTTAGAAGAAGATGAATGATCTAAATGCTTGTTTGAGTGTTGAAACTGTAAGTTGAATGTTTCCTCAGCATTCTCATTTTCTTTCGTACTGAAGATCACTGTTTTGGAATGCATAACAAGAGAGATGAGATTGTTTATGTTAGAAACCACAGTTATTCCACCTGCTCCTGCTTGTTTAAAGGCTTCTGCCTCTAGTTTTGATATTTCTTCATCACAATCCATCAGGCTTCTCAGCCCAACACTACTGAAAATTTCTTCAACTTTTCCCACTTCTGCCAAACCTTTGTTCTTGTAGTTCCTCTCCTTGTTTTTGCTCATTAGTTGAAGAAGCTCAGTTCTTCTTTGAATCTCTCGAGCATTGGCTGAAAACTCCAATCGCTTAGCTTGCCTGTGAAGAAGCTCCACTTGTTCTCTCGTATCATCTGTTAATTTAAGCAAGCTGAGAGGTAAAATATCAAGCACCCTCCCAATCTCCTTCACTAGCTGATAAAACTGATTGGAAATGGTCTCAGTCTGTAGTAAGCTCCATAGACAGCTTCCTTCCTCGCAGCTTTGAATCAGAATCTTAACTCTTCGGATTACAGAAAAGAGTTCAGTGAGACAAAGAATGGAAGATAGAGGAAGAGCACAATTTGATTCTTGAACCTCTTCAAATAAGAAAGCAAGGAGCTTGATTCTTCTTCTCATGGTTGAGATAGTCCTAGCCTGCACAAAAGGAGAGTTCTCCTCAAAGGCAACTTCATTGGATAGAAGAATTAATGATTGCAGCAGAGACCCAGAAGGCAAAAGGCTTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCGGTCTCACTCCATGA

mRNA sequence

TTTCTTTTGGCCTTCAATGACCCATCTGCGGCCAAGCTTTGTAGAGAAGGGATACTTCGAGGATTTAGCAACAAGCGCCTTCCAACTTCCTCTCCTCCATCCTTGCACAGCCCCAATAACAGTGTAATTGAACTCTCTTTCCCTTTTGGAGATCCAAATCTTAAAAGATCAATGAGCGAAGGCACTAAAACTCTACTGTTTCTTATCTCCTGCAGCCCTTCTGAGCAACCCATAACCAGGGAGAGCGCCTGCAAGGCTTCATCTGTTATGCCTGCCTTGTCATCTGTTAGCAAGTCAATCAGCAATGGGACTGCCCCAGAAACTACGATACAAGCTTTGTTGGCACTGTAAAGTGCTAGATTGCAAAGTGCAGTGGTGGCATCTCGCTTCCCGACTGGATTGCCGTCCTTCAGGAGCCTCACCAATGCTGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCGATCCTTGGATCACCGGATTTCAACAGCGTCACCAGAAACGTCCTAGCCTGCACAAAAGGAGAGTTCTCCTCAAAGGCAACTTCATTGGATAGAAGAATTAATGATTGCAGCAGAGACCCAGAAGGCAAAAGGCTTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCGGTCTCACTCCATGA

Coding sequence (CDS)

ATGGGACTGCCCCAGAAACTACGATACAAGCTTTGTTGGCACTGTAAAGTGCTAGATTGCAAAGTGCAGTGGTGGCATCTCGCTTCCCGACTGGATTGCCGTCCTTCAGGAGCCTCACCAATGCTGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCGATCCTTGGATCACCGGATTTCAACAGCGTCACCAGAAACGTCCTAGCCTGCACAAAAGGAGAGTTCTCCTCAAAGGCAACTTCATTGGATAGAAGAATTAATGATTGCAGCAGAGACCCAGAAGGCAAAAGGCTTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCGGTCTCACTCCATGA

Protein sequence

MGLPQKLRYKLCWHCKVLDCKVQWWHLASRLDCRPSGASPMLIARLNNAVTAFSSILGSPDFNSVTRNVLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAGLTP
Homology
[Close]
BLAST of Carg02133 vs. NCBI nr
Match: KAG7016021.1 (hypothetical protein SDJN02_21125 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 1.9e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGLPQKLRYKLCWHCKVLDCKVQWWHLASRLDCRPSGASPMLIARLNNAVTAFSSILGSP 60
           MGLPQKLRYKLCWHCKVLDCKVQWWHLASRLDCRPSGASPMLIARLNNAVTAFSSILGSP
Sbjct: 1   MGLPQKLRYKLCWHCKVLDCKVQWWHLASRLDCRPSGASPMLIARLNNAVTAFSSILGSP 60

Query: 61  DFNSVTRNVLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAGLTP 119
           DFNSVTRNVLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAGLTP
Sbjct: 61  DFNSVTRNVLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAGLTP 118

[Close]
BLAST of Carg02133 vs. NCBI nr
Match: KAG6578457.1 (LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 69  VLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAG 116
           VLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAG
Sbjct: 5   VLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMAG 51

The following BLAST results are available for this feature:
BLAST of Carg02133 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016021.11.9e-61100.00hypothetical protein SDJN02_21125 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6578457.15.5e-16100.00LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of Carg02133 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02133 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02133 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02133-RACarg02133-RAmRNA