Carg02110 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02110
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GATA type zinc finger transcription factor family protein
Location	Carg_Chr15: 728804 .. 731437 (-)
RNA-Seq Expression	Carg02110
Synteny	Carg02110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAATCCCTGTCCTTATTCTTCACCTCTTCCCTTTTCCCGTCGGCCCTTCTCCCCCCTCGAACTTCTCTGACGATTCCGCTTTGTTTGGTTTACAGATCCACCATTTTCCCACTCTCTAATCTCAGGTACGTGATTTTAACTCGATTTAGTTCACATTTCCCAGCTCCCAACTCCCAGATCACGATCAATATTTCGTGTTTAAGATCTTTGTTATTAAAACAGTCGTGGGGTTTTGGGTTTATGTTTGTTCGTTGCAATTTTACAATCTAAACTTGAATGGGCTGCAAATACTTTTGCAGTTTCTTCTACACCAAACAGAATTTGATTCGAGGAGCGTCTACGTTCGGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGGTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGGTATTGCACTCTGTGTTTTCAGCATAATGGCGTTTAACAGTGAGTAGGAGCTAAAATATGTCCTAAAACCACTCCTGATCTTGATTTGAACCATAACAAGAGATTTTGCTGTTTATAACCCTGGTCTCTGCTTGCCTTCAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACGTACGTTTTGATTTTCTTTCAGATAACTTTTTGTTTCACTTCCTAGAAACTTTACTTTCGCATGTTTAATTGTGTTTGAGTTTTACTCTCTACAGCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGGTAATTTCCTGTCGTAATCAATTGTAATCTTTTGCTTCAAGGAGATAAAATTATGCTGATTCTTGTAAGCACTTTACTGGTTTCAGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACTCACCTACTGAGATCTCCATAGATTATTCATTAATGGAGCGTTCAATCTATGATCTATGATGCATTAATGCATGAATGAACATCTGTTGAAGCTGGCTAATTAGTTTGGGTACAATGCTATTATATTAAGTAGATTTGCTATAGAACTGTGATTTGTGAAGATACTCGTATTCTTTCAAAAGTTGTTACATTACCTTGACCGTTCAAAAACGTTTCAAAACTATTATTGGTGTAGAGAGTCATTGAAAATTAGGACTTGTCGCGTCTATGTACGTAAGCCCCTTCTCTGTTACTTCCTTCGGGTCGAGCTTCCTTTGAACGGCTGATAGGAATTTAAGCGTACCTGTTCTGGAGTTGGTCTTGGTCTTCCCTTTTGTTTGTTGCTGGCTCGACTCGTGTCATTGCTCTCTTGTGTGGACACTTGGAGTGCACTCAGGGACACTCGATGAGGGCATTAGGATAGTTTGTGGGGGGCTTTTACACAACAAGCACTATAAAGGCATCATCGAATAGTTCTTTTGAGGATAGGGTCCTCGAGATAACCCAACATTGGTATTCTTTTGAGGGTAGGACAGTTTGTGGGGGGGCTTTTACACAACAAGCACTGTAAAGGCATCGTCAAATAGTTCTTTTGAGGGTAGGATCCTCGAGATGACCCAACGTTGGTATTCTTAGGAGGTCTATCCGTTCCCCCATTTGGTCTGTCATTACTTTTGTTTGGCCTACTGGGACCTTCATTCTGTTGACCCAACGACTTGTACGATTTGCCCCCAACACTCGGAGTTTATGTATTCTTCCTTTAAGAAACGTTTCAAAACCACCATTTCAGTTCACTGTCATCCATTCCTAAGTCCAAATTTTCAACCAAATTTCTAATGGATGTCTATCCTTCGGGTGCAACTTTTGAAAGAGTAGTTCTTTTTTTGATCAACTCCATGGATATTGGTTCACGAATTTGAGAATTGTCCCAAACCAAACCAAGGTTTATAGAGTATGATATGAATGTGTTATTACAAATACTTGCAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGGCTTTAAAAACTTACGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACTGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGGTTCCAGGATTTGCATATTTTGAGAATTATGCGTTGTGTTCTCGT

mRNA sequence

TCCAATCCCTGTCCTTATTCTTCACCTCTTCCCTTTTCCCGTCGGCCCTTCTCCCCCCTCGAACTTCTCTGACGATTCCGCTTTGTTTGGTTTACAGATCCACCATTTTCCCACTCTCTAATCTCAGTTTCTTCTACACCAAACAGAATTTGATTCGAGGAGCGTCTACGTTCGGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGGTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGGCTTTAAAAACTTACGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACTGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGGTTCCAGGATTTGCATATTTTGAGAATTATGCGTTGTGTTCTCGT

Coding sequence (CDS)

ATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA

Homology

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BLAST of Carg02110 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.4 bits (1017), Expect = 1.4e-106
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Carg02110 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395.2 bits (1014), Expect = 3.2e-106
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Carg02110 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 3.2e-106
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Carg02110 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 1.1e-103
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Carg02110 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103
Identity = 182/189 (96.30%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLS DG+SYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Carg02110 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 4.9e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Carg02110 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-90
Identity = 156/190 (82.11%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LS DG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKESG+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRPAASVPEA 190
           KR  A+   A
Sbjct: 181 KRATAAATAA 190

[Close]

BLAST of Carg02110 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 9.0e-72
Identity = 123/185 (66.49%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+++G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RPAAS 186
           R +AS
Sbjct: 181 RRSAS 183

[Close]

BLAST of Carg02110 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 115/184 (62.50%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS++G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RPAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]

BLAST of Carg02110 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-68
Identity = 122/189 (64.55%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ DGV YHK+CFKCSHCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F+K F    +S +K   EL R+PSK    FSGTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL-IKSASM 180
           +T+E +SYHKSCFKCSHGGC ++ S+YAAL G+LYCK HF QLF EKGSYNH+  KS S 
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 KRPAASVPE 189
           +     VPE
Sbjct: 181 EVLPEVVPE 186

[Close]

BLAST of Carg02110 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 6.9e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Carg02110 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 6.9e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Carg02110 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.5e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Carg02110 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.5e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Carg02110 vs. ExPASy TrEMBL
Match: A0A2R6RWU9 (LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01597 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.9e-101
Identity = 177/189 (93.65%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVE LS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCSI+PSNYAALEGILYCKHHFSQLFKEKGSYNHL+KSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMK 180

Query: 181 RPAASVPEA 190
           RP AS+PEA
Sbjct: 181 RPIASIPEA 189

[Close]

BLAST of Carg02110 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-95
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Carg02110 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-95
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Carg02110 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-95
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Carg02110 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-95
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Carg02110 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 345.1 bits (884), Expect = 3.5e-95
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

The following BLAST results are available for this feature:

BLAST of Carg02110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939310.1	1.4e-106	100.00	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]
KAG6578438.1	3.2e-106	99.47	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023550254.1	3.2e-106	99.47	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]	[more]
XP_004138434.1	1.1e-103	96.83	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_038884117.1	3.3e-103	96.30	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]

BLAST of Carg02110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	4.9e-94	82.41	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	1.1e-90	82.11	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	9.0e-72	66.49	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	3.8e-70	62.50	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	4.6e-68	64.55	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Carg02110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K140	6.9e-107	100.00	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]
A0A6J1FFI9	6.9e-107	100.00	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A1S3B3E4	5.5e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	5.5e-104	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A2R6RWU9	1.9e-101	93.65	LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]

BLAST of Carg02110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	3.5e-95	82.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	3.5e-95	82.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	3.5e-95	82.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	3.5e-95	82.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	3.5e-95	82.41	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 1.3E-13 score: 61.2 coord: 9..61 e-value: 4.2E-13 score: 59.5
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 108..163 e-value: 5.0E-11 score: 42.7 coord: 10..65 e-value: 4.0E-12 score: 46.2
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.414599
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5731
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 3.4E-20 score: 74.0 coord: 4..74 e-value: 7.0E-21 score: 76.2
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..189
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..189
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 4.46695E-37 score: 121.038
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.62315E-41 score: 132.589
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02110-RA	Carg02110-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding