Carg02081 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02081
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 7660047 .. 7661009 (+)
RNA-Seq ExpressionCarg02081
SyntenyCarg02081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATGTATGCGAAATGGAATTTCTGAATATTCGAATGCCAGATGTTTGTGCCAGATCAGTACCTTTCTGAATGAATCGACGGCCGATTTTACCAGCGAAGAGAAGGCTAGCGATTCTTCATTTGATTTTGAATTCGAAGGGTTTATCATTTCATTTCTCGATCCTCTCCTTTTCGATTTCTCTCTCCTAACTTTTCCCGGAAAATTTACCCTCATTTTCTCGAGAAAGTGATCTGAGGATCTTTTCTTTTGTTTGTTTTTGGAATTGCTTCGATTCATATTTTCTTAGGGTTTTTGCTATTCTTCCTTTTTGCCAAGAATGGCGGATTCGTTGAAGGTCAAAGTCAAAAAGTCCGGGCAATAAATTAGAAAACCGTAACCGAAAAGTGCCTGATTTAGTCAGCCAAGAAGAGCCCTGCGAGAGGGAGGTTCCTTTTTTAGTTTCTTAAATTGTATCCAAACCAAGGGGTTCTGTTGTTGGAGAGTGATCCATCTGTTTCTTTGGCTCAAAGAAACAGAAAAAGAAAAAAGAAAAAAGAAAATAGAAAAGAAAAGAAAGGACCCTGAGGAGGAGGAGGGCCAATTAAGCTTCAGGAATTCTCTCTTTCCAGATCTACCCGTTTCAACGTTCTGACAGTTCTTTTCCTTCTGTCAGAACACCCGAATTTCTTTTAATCGATTCCCTTTTTTAGTTCATCATATAATATGTTCATCCATCTGTAATTGAGCAGTTCTGCAGAAAAGGGCCTGCAAGATCTATCGGAAATCAGTGATCAAGGTTTGTTATTGGTGTTTTTGTATTCTTTATTGTTCATAGGTTCAATTTTGTAAACTTAGCGATTCAATTTTAGTTATATACTGTTCTGTATTGTGAATTTCGAATTGTCTTTTCATTTGTTGTGCCATTGTGTTTGCAGTTTTCCTACGTATAGCCATCAAGAAACTCAATGTTTTCTGA

mRNA sequence

ATGGAAGAATGTATGCGAAATGGAATTTCTGAATATTCGAATGCCAGATGTTTGTGCCAGATCAGTACCTTTCTGAATGAATCGACGGCCGATTTTACCAGCGAAGAGAAGGCTAGCGATTCTTCATTTGATTTTGAATTCGAAGGTTCTGCAGAAAAGGGCCTGCAAGATCTATCGGAAATCAGTGATCAAGTTTTCCTACGTATAGCCATCAAGAAACTCAATGTTTTCTGA

Coding sequence (CDS)

ATGGAAGAATGTATGCGAAATGGAATTTCTGAATATTCGAATGCCAGATGTTTGTGCCAGATCAGTACCTTTCTGAATGAATCGACGGCCGATTTTACCAGCGAAGAGAAGGCTAGCGATTCTTCATTTGATTTTGAATTCGAAGGTTCTGCAGAAAAGGGCCTGCAAGATCTATCGGAAATCAGTGATCAAGTTTTCCTACGTATAGCCATCAAGAAACTCAATGTTTTCTGA

Protein sequence

MEECMRNGISEYSNARCLCQISTFLNESTADFTSEEKASDSSFDFEFEGSAEKGLQDLSEISDQVFLRIAIKKLNVF
Homology
[Close]
BLAST of Carg02081 vs. NCBI nr
Match: KAG6601034.1 (hypothetical protein SDJN03_06267, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031841.1 hypothetical protein SDJN02_05882, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MEECMRNGISEYSNARCLCQISTFLNESTADFTSEEKASDSSFDFEFEGSAEKGLQDLSE 60
          MEECMRNGISEYSNARCLCQISTFLNESTADFTSEEKASDSSFDFEFEGSAEKGLQDLSE
Sbjct: 1  MEECMRNGISEYSNARCLCQISTFLNESTADFTSEEKASDSSFDFEFEGSAEKGLQDLSE 60

Query: 61 ISDQVFLRIAIKKLNVF 78
          ISDQVFLRIAIKKLNVF
Sbjct: 61 ISDQVFLRIAIKKLNVF 77

[Close]
BLAST of Carg02081 vs. ExPASy TrEMBL
Match: A0A0A0KQ36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177070 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.6e-04
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  MEECMRNGISEYSNARCLCQISTFLNESTADF-TSEEKASDSSF 44
          ME+ MRNGISEYSNA+C CQI+ F NES   F T++E  +DS+F
Sbjct: 39 MEDNMRNGISEYSNAKCWCQINGFPNESRVQFTTTKENTNDSAF 82

The following BLAST results are available for this feature:
BLAST of Carg02081 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601034.19.4e-33100.00hypothetical protein SDJN03_06267, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg02081 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02081 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ367.6e-0461.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177070 PE=4 SV=1[more]
BLAST of Carg02081 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02081-RACarg02081-RAmRNA