Carg02055 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02055
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Thioredoxin-like protein YLS8
Location	Carg_Chr04: 7802330 .. 7803852 (+)
RNA-Seq Expression	Carg02055
Synteny	Carg02055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTACCTGTTGCCGCATCTGCACTCAGGCTGGGCGGTGGATCAAGCAATCCTCACTGAAGAAGAACGCGTCGTCATCATCCGCTTCGGCCATGATTGGGACGACACCTGTATGCAGGTAACCTCATTTCCAATCCCTAACTCTTCTTCTCCTCGCTTTCATCGCTTTTCACGGCGTCGAGGTTTTATGCATTTTCTTGCCGATTCCGATTCTCTTCGGTGATCAATATACAGAGGACGACGATTTTCTTGTTCGAAAATTTTCCCTATTCTTTTGCAGAGATCAAAGAAAGACGAAGCTATATCTATCTATCTATCTATATATATATATATATATATAGTTCTTTTTTTCTTGTTAAATTATTATTTTCATCTAGTTCGTTCCATTTTTTATTATTTAGTTCAAGGTCTTGTTTTTACTAGATTAAGAAGCATATTTTTAGTTAACAATTTAGTTTTAAATTAATAAATCATAATTTAGTTTGTGAATTTTAATATATAAGGATTTAATTTTATATTTTAACGTTGGTAATAATTTAGTCATTAATTTGGTTTCTATATTTCATAATTTATAATGAATTAATCCCTACTAAATATAATTTCTTACACGTTCTCGTTTCAAAATTATTTATAAACGATGAAGACCAAATTATTTAATTGAATTTCACACTTCCTAAGTTGAAACTTACTGATTTTTTTTAACATTTATCTATTTTTTCGAGTTAAATTAAAATTATAGTCTTCGAATTTCAAGATTTATGTCAATTTAGCTCTAATATATATATATATATATATATATATATATATTATATATAATTTTAAATTTGAGATAAAAATTACTCTATACAAAATTTCAAATTTATATATACACAAATTAATTTCTTAAAAAAAAAATTAAAAATTGTTTAATAGTTATTCTGATGCAGCACTTTTTCCTATTTATTCTATTTATTCAAACACAGTAAACTCGTTTTAGTATATTCGGTCTCATAGCTTTGTTACCTCCCTTTTAGTATACTAACTTAGCTTATTATCCATTACTACGTGGCCAAGTGTCTACAAGTTTCAAAGGGAGTCGATCTTTTTTATATTAACATTGAAATTATTTACAGAAAGTCGAAAGATTTATATAATTAATCTAAATTCCACTCTCCAACATTCTTATGTTAATTGTTTGGTAACGTTTTATAGTTTGATATGTTTTTGCTGTAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTCTATGATCCTTCTACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATTGATATTATTGAGACTGTCTATCGTGGAGCAAGGAAAGGTCGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGTCGTACCTGTTGCCGCATCTGCACTCAGGCTGGGCGGTGGATCAAGCAATCCTCACTGAAGAAGAACGCGTCGTCATCATCCGCTTCGGCCATGATTGGGACGACACCTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTCTATGATCCTTCTACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATTGATATTATTGAGACTGTCTATCGTGGAGCAAGGAAAGGTCGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGTCGTACCTGTTGCCGCATCTGCACTCAGGCTGGGCGGTGGATCAAGCAATCCTCACTGAAGAAGAACGCGTCGTCATCATCCGCTTCGGCCATGATTGGGACGACACCTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTCTATGATCCTTCTACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATTGATATTATTGAGACTGTCTATCGTGGAGCAAGGAAAGGTCGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Homology

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BLAST of Carg02055 vs. NCBI nr
Match: XP_022957086.1 (thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_023543236.1 thioredoxin-like protein YLS8 [Cucurbita pepo subsp. pepo] >KAG6601055.1 Thioredoxin-like protein YLS8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031867.1 Thioredoxin-like protein YLS8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 6.8e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. NCBI nr
Match: XP_004143618.1 (thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus] >XP_022139324.1 thioredoxin-like protein YLS8 isoform X2 [Momordica charantia] >XP_022999573.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_038892358.1 thioredoxin-like protein YLS8 isoform X2 [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. NCBI nr
Match: KAF3794979.1 (Thioredoxin-like protein [Nymphaea thermarum])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL+EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILSEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. NCBI nr
Match: XP_008361907.1 (thioredoxin-like protein YLS8 isoform X2 [Malus domestica] >XP_008445881.1 PREDICTED: thioredoxin-like protein YLS8 [Cucumis melo] >XP_009351744.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Pyrus x bretschneideri] >XP_010067005.1 thioredoxin-like protein YLS8 isoform X2 [Eucalyptus grandis] >XP_011002245.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Populus euphratica] >XP_017971313.1 PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Theobroma cacao] >XP_024460640.1 thioredoxin-like protein YLS8 isoform X2 [Populus trichocarpa] >KAA0034068.1 thioredoxin-like protein YLS8 isoform X2 [Cucumis melo var. makuwa] >TKS12327.1 thioredoxin-like protein YLS8 isoform X2 [Populus alba])

HSP 1 Score: 295.0 bits (754), Expect = 3.4e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. NCBI nr
Match: XP_030457658.1 (thioredoxin-like protein YLS8 isoform X2 [Syzygium oleosum] >XP_030547610.1 thioredoxin-like protein YLS8 isoform X2 [Rhodamnia argentea])

HSP 1 Score: 294.7 bits (753), Expect = 4.4e-76
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVV+IRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 6.3e-78
Identity = 137/142 (96.48%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

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BLAST of Carg02055 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy Swiss-Prot
Match: P87215 (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.4e-61
Identity = 106/142 (74.65%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ER+V+IRFG D D+ C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

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BLAST of Carg02055 vs. ExPASy Swiss-Prot
Match: Q75BD8 (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DIB1 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-51
Identity = 92/138 (66.67%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 2   SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+TEEER+V+IRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

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BLAST of Carg02055 vs. ExPASy TrEMBL
Match: A0A6J1GY92 (thioredoxin-like protein YLS8 OS=Cucurbita moschata OX=3662 GN=LOC111458573 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy TrEMBL
Match: A0A6J1KK33 (thioredoxin-like protein YLS8 OS=Cucurbita maxima OX=3661 GN=LOC111493896 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy TrEMBL
Match: A0A6J1CCM0 (thioredoxin-like protein YLS8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010265 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy TrEMBL
Match: A0A5A7STV6 (Thioredoxin-like protein YLS8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00560 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.6e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. ExPASy TrEMBL
Match: A0A4U5QS93 (Thioredoxin-like protein YLS8 isoform X2 OS=Populus alba OX=43335 GN=D5086_0000064470 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.6e-76
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 291.2 bits (744), Expect = 4.5e-79
Identity = 137/142 (96.48%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+IL EEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Carg02055 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-20
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

The following BLAST results are available for this feature:

BLAST of Carg02055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957086.1	6.8e-77	100.00	thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_023543236.1 thioredoxin-l...	[more]
XP_004143618.1	2.6e-76	99.30	thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus] >XP_022139324.1 thior...	[more]
KAF3794979.1	2.6e-76	98.59	Thioredoxin-like protein [Nymphaea thermarum]	[more]
XP_008361907.1	3.4e-76	98.59	thioredoxin-like protein YLS8 isoform X2 [Malus domestica] >XP_008445881.1 PREDI...	[more]
XP_030457658.1	4.4e-76	97.89	thioredoxin-like protein YLS8 isoform X2 [Syzygium oleosum] >XP_030547610.1 thio...	[more]

BLAST of Carg02055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FE62	6.3e-78	96.48	Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1	[more]
P83876	1.5e-71	85.92	Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1	[more]
P83877	1.5e-71	85.92	Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1	[more]
P87215	5.4e-61	74.65	Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]
Q75BD8	2.3e-51	66.67	Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of Carg02055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY92	3.3e-77	100.00	thioredoxin-like protein YLS8 OS=Cucurbita moschata OX=3662 GN=LOC111458573 PE=3...	[more]
A0A6J1KK33	1.2e-76	99.30	thioredoxin-like protein YLS8 OS=Cucurbita maxima OX=3661 GN=LOC111493896 PE=3 S...	[more]
A0A6J1CCM0	1.2e-76	99.30	thioredoxin-like protein YLS8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7STV6	1.6e-76	98.59	Thioredoxin-like protein YLS8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A4U5QS93	1.6e-76	98.59	Thioredoxin-like protein YLS8 isoform X2 OS=Populus alba OX=43335 GN=D5086_00000...	[more]

BLAST of Carg02055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08290.1	4.5e-79	96.48	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT3G24730.1	2.8e-20	37.96	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 4..136 e-value: 3.9E-97 score: 338.7
IPR004123	Dim1 family	PIRSF	PIRSF017199	Dim1	coord: 1..142 e-value: 6.6E-75 score: 247.3
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 4..136 e-value: 3.2E-67 score: 224.4
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 1..142
IPR004123	Dim1 family	CDD	cd02954	DIM1	coord: 10..123 e-value: 1.03268E-75 score: 218.703
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..141 e-value: 5.7E-79 score: 264.6
None	No IPR available	PANTHER	PTHR12052:SF9	SUBFAMILY NOT NAMED	coord: 1..142
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02055-RA	Carg02055-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP