Carg01935 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01935
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich RNA-binding protein RZ1C-like isoform X1
Location	Carg_Chr04: 8481150 .. 8486167 (+)
RNA-Seq Expression	Carg01935
Synteny	Carg01935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCATTTTTATGTATGTTAATTGATTTGTGGTTTGATCTGTATGGCTGAAAACTGAAGCAATTGGACTTCGTTTTAACCCAACACGTTGGAATAAGAAGTCCATTTGTTTCTTATATGAGAAGAAAATAGATTAGATTGGTATCATTCTGGTTCAATGTTCATATGGAGAATATAGTTTCTCAAATTCCACTCCCTTCCCTCTAATTAACATTTCCCTCTGATGATAGCATGAAAAAGAAAACCACAGATAAATTGCAAAATTAACTTTTATCATCGAAAGCCATAATTTTTTGTTTTTTCAGCACTGTTTTGTGGCACCTGTAATATTTCAGCAACCTCTTCTCTTTCTGATGATGTTTCTTTTCCCCTTGTGAATGAGGATGCTGTTAATAAACAATTTGGGAAGCGGTTTCTCTATCCACGTAACAATGCACCAAGATGCTGAAGGTCATAGGCTTGTATGTGCTTAACTATTATCTGATTTAAGATCTGCTAGCAAAGAAAAAGTGCTACTGTCTGGAAATTGGGAATATGGTCGCCTGCCTAGCTGATCGGGGTTTGGTAGGATTTTAATACGCAAATTCAGCGACTAATTGTTTCTGTGGGATAAAAGAACTTGTCACTTTTTTGCGACAGATAAATGATTTAAAACCAGAGGAACTCTTAACAAGTGCTGTGCTGATGCCTGCTTCAGCAGACCTTGATTGTTTTATTGTTCGTTGATGTTTTTGATGACGAAACTGAAGTCGCTAAAATGTTTCAGCATCTGACTAATAAACGTTCTAGTATTTGCTTGGAGAATTTTATCTTGCTTGGGATGATTATGAAACCCTACATCTTATCTTTGGCTTACCGCACTTACCAATAGTATGACTAAAATTTATGATGAAGGTTATGTGGTCATTTGAGATGATGTACATGGGGCAGAAGGTTTGGGATAGATTGCCATATTGACTCAGATAATGAGTTTGCTAAGTCCTCTAATCTCAGAAAATCTTCAGAAGCTGTATGTTATTGGATGGAAAGTTATGTTGTATGAAGATGGTTTCTTACTAGTGGCTGCTTCTTTGCAATGCTTTCTTCGTTTTCCTATCTATAACTGTAATTATTATCAAAGTGAGAGATAGCTGGTTTTCTCATTTGCTTGTGTCACCGGTGTTGAGAGTTGTCAGTTTGATTCTAAGATGGAGAATACGTAAAAGTGGTGTGTCCTTTTTGGCTAAGATTTATGGTAGTGTGCAAAAGTACAATTTTTGGAAATCAATAACCATTTCATCCTTTTGAGTGGACACTGCATTGTTGAATTTCATTTTGCTGGGATGAAGTTGTCAGTGTCCCTTACTTTTCCAGGCACGCTCCGAAAGTTGTTTGTACTGGTTTCTGTTTAGCAGCTAATGTGGCTAGAATGGCACTAGCGATGCCAGGCTTAGCAGCTCAGACATTTTTTGAAGAATTGGCCAAACTGCATCGGTAGTCTTTAATTTGACATGTATTCAACATTGTATGATGTTAGCTGAATTGTAAATGTCAGTATGAGGGCCTATTGTGATCAGTTGTCTTCTCTGGCGAGCTTGTTAAGATACTATGTGGTGGACAGAACAGTGGATATTGATGTGGATATTTTTGTCATTCAAAGCTTCCTGAGCTCTTAAGGCCTCTGATGTTGGACTCCGTTTTCTGTTATGACCGAGCATTATGAATGTCTGATTGTTGGGTATAGTACTGGATCGGAGCAATTGGATTTGAAGTTAAATTTGAGTTCCTATAGGTGCAGTGTTGCAGGTTGGGGTTTTTTTTTATGAGCTATTTAGATGAATGGATTTAGGTTCTGGCAACCTGTGAAATTATGGAGCTGTAGTTTTCCATTCATTTGTTTACATCCTTTTCTCGTTGTTTGAAGTTGTTCCTGAAGATTGGTCAAGAATGCTCTGCTATTTTGTTTTCCTTTTTTATGGTGTTGATGTGCTAGTTCCCTCATATTATACTCATTGACAGTCTTTGTCATTCCTTGAATATGAATATGTTCCTAGTTAAGTATGGTTGCCATGCAAGATTTATCGTCATCAAGTTTTCCAGTACAGCCTCTTGTCCACAAACTGAAGGGATCTCAATTACGGAATAAGTTGGCATCTCCATTGCTTGAAATTTTACTGTTTTAGTGAACCTTGCCTTCATCTCCTAGAGCATTCATCCTGGAAGATGTGTTGTTTTAAGTATTCGTCTTTCTTTTTTGAGATTTATGTCACCATCTCTTTCACATCACATCCTAATATGATTGATCATGTGACCGCTTTGTTGAGGTTAACAAATCCCATAGTTGGAGTAATACACATATCCACTGAAGTGTTTGTACTGGGTTTTTTTGAGTTAACATTGACTTTGAGTGCCATTTTGGATGCCGGACTGCACAGAAGAAGTCCATGTAGCCACTTTTTTAATGGAATTGTTTCTTTAAATAAAAGGGGACTAGAGAGGTCTAAGAGATTCCCACTTCAGAACATAGAGATAAAGACGTACAGGCTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAAAATGTAAGTTGTCCGACTGTTTAGTTATATATTTTAAAACATATTTATGCTGTTATTATCAATTGTTATAAGTTTAAACTTCGAACAAATTCTCTTTGATGTACTTTTTATAGTGTATACCGTCACCAGCTTGTACCCTTAACTTATTCTATTATTCTGCATTCTCTTAATGCAATGTAGGCTTGTAACCATGTTTGATGATAATTTGGAGTTTGAAACCTCCAACTTGTAGATCATGTCAACTGTATGGTATCGAATTTATGCATCTTGACACTGTCACAATTGTATTTGTGGGCTTCAAGCCCAAGAGTGGGTATAGTATTCCATGCTCTAAGATTAACTCCATGTCTATTAACTTCAAGGTTGTCAACTAGGATCTTAAATACCAAAACAAAGCCTCTTTATATTAGTGATTAGGCTATAGCCTGATAGCCTGTCATCTTTGAATATGAGGTGTGCATTTTGGCTGTTTATTTTTCTTTAATTGTGAGGGTCTTCATCCTTGTTTCTGATGCCGGTTTTTGTTACATTAGACAAATTTACTTCATAATCTAGGTTTAGACTAAGCTGATGGCGGGTAGGCTTGAAGTTATCACTTGTATACATTATTAGTATGAGATGTTCTTTACTAGCTCTGGTTTAATGACTTGATTTAAGTTCTATTGGGTGTCCAATTGATTGGCGTAAACTTCCTCTTTGATGTTCCTGTAGATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGACCGTTATGAAGGTGGCGGGCGCTTTGGTGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGGTACTGACTGATATTTTCTCTGGATTTTTGTGGCATTATTTTCCATGCATAAAATATTCTTAAAATTTATGCTTTAAAGTTATGATCAATAGGAATTGATAAATGGGCAGAATGAAGATCCTATGTCATTTCTTTTGCTTATTAATCTGAGTCACTGCTCAATTATTATCTTGCACATCATGTAGTTGATGGATCCTCTCATTCCTGATCTTATATGTAAATCTGCAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGTTTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGAATGTTTTGTTGTTAGAAGATAGCACATTTTCTGGTTTATCTAGTAAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAGTTATATAGGATCTAGTTGCAGTACCGTGGCCCGAACGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTGTTCAGAGACAAGATAAATGCTCTGAAGAACGATGAATGGACAGAGACAGATTTAAGTTGACAATTTTGTGATTCCTAAAATGTTGAGCTGATTGTCGGACTGAGCTGACATACGAAGGTCGAGTCGGGGGGACCCCGAGGCTCGTTTGAATCGTAAGCCACAAAACAGATTAGTAAATACAATTCTAGAAGCAAGAGGCTCCTCTCCATATTTGTGTATTGAGCAGCACCTAGTTCTCTGCCGGATAGAGCTATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTATCCGGCAATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTTCATAAGCACCAAGAACTCTCCTGTCGATCTGATCATTGGTCAATTAGTTAAGATTTACGTCATTTACGTCTTCTATCGATCAGAAATTTAAATAATATCTCGTATGGATGATCTGTCATTATGAAGCTTGAAATTGGCACCAAGAACTCTCCTGTCGATCTGAACATTGGTCAATTAAGATTTACGTCATTTATGTCATCTATGGATCAGAAATTCAAATAATATCTCGTT

mRNA sequence

ATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCATTTTTATGTATGTTAATTGATTTGTGGTTTGATCTGTATGGCTGAAAACTGAAGCAATTGGACTTCGTTTTAACCCAACACGTTGGAATAAGAAGTCCATTTGTTTCTTATATGAGAAGAAAATAGATTAGATTGGTATCATTCTGGTTCAATGTTCATATGGAGAATATAGTTTCTCAAATTCCACTCCCTTCCCTCTAATTAACATTTCCCTCTGATGATAGCATTTTTTTCAGCACTGTTTTGTGGCACCTGTAATATTTCAGCAACCTCTTCTCTTTCTGATGATGTTTCTTTTCCCCTTGTGAATGAGGATGCTGTTAATAAACAATTTGGGAAGCGGTTTCTCTATCCACGTAACAATGCACCAAGATGCTGAAGGTCATAGGCTTGTATGTGCTTAACTATTATCTGATTTAAGATCTGCTAGCAAAGAAAAAGTGCTACTGTCTGGAAATTGGGAATATGGTCGCCTGCCTAGCTGATCGGGGTTTGATAAATGATTTAAAACCAGAGGAACTCTTAACAAGTGCTGTGCTGATGCCTGCTTCAGCAGACCTTGATTGTTTTATTGTTCGTTGATGTTTTTGATGACGAAACTGAAGTCGCTAAAATGTTTCAGCATCTGACTAATAAACGTTCTAGTATTTGCTTGGAGAATTTTATCTTGCTTGGGATGATTATGAAACCCTACATCTTATCTTTGGCTTACCGCACTTACCAATAGTATGACTAAAATTTATGATGAAGGTTATGTGGTCATTTGAGATGATGTACATGGGGCAGAAGGTTTGGGATAGATTGCCATATTGACTCAGATAATGAGTTTGCTAAGTCCTCTAATCTCAGAAAATCTTCAGAAGCTGTATGTTATTGGATGGAAAGTTATGTTGTATGAAGATGGTTTCTTACTAGTGGCTGCTTCTTTGCAATGCTTTCTTCGTTTTCCTATCTATAACTGTAATTATTATCAAAGTGAGAGATAGCTGGTTTTCTCATTTGCTTGTGTCACCGGTGTTGAGAGTTGTCAGTTTGATTCTAAGATGGAGAATACGTAAAAGTGGTGTGTCCTTTTTGGCTAAGATTTATGGTAGTGTGCAAAAGTACAATTTTTGGAAATCAATAACCATTTCATCCTTTTGAGTGGACACTGCATTGTTGAATTTCATTTTGCTGGGATGAAGTTGTCAGTGTCCCTTACTTTTCCAGGCACGCTCCGAAAGTTGTTTGTACTGGTTTCTGTTTAGCAGCTAATGTGGCTAGAATGGCACTAGCGATGCCAGGCTTAGCAGCTCAGACATTTTTTGAAGAATTGGCCAAACTGCATCGGTAGTCTTTAATTTGACATGTATTCAACATTGTATGATGTTAGCTGAATTGTAAATGTCAGTATGAGGGCCTATTGTGATCAGTTGTCTTCTCTGGCGAGCTTGTTAAGATACTATGTGGTGGACAGAACAGTGGATATTGATGTGGATATTTTTGTCATTCAAAGCTTCCTGAGCTCTTAAGGCCTCTGATGTTGGACTCCGTTTTCTGTTATGACCGAGCATTATGAATGTCTGATTGTTGGGTATAGTACTGGATCGGAGCAATTGGATTTGAAGTTAAATTTGAGTTCCTATAGGTGCAGTGTTGCAGGTTGGGGTTTTTTTTTATGAGCTATTTAGATGAATGGATTTAGGTTCTGGCAACCTGTGAAATTATGGAGCTGTAGTTTTCCATTCATTTGTTTACATCCTTTTCTCGTTGTTTGAAGTTGTTCCTGAAGATTGGTCAAGAATGCTCTGCTATTTTGTTTTCCTTTTTTATGGTGTTGATGTGCTAGTTCCCTCATATTATACTCATTGACAGTCTTTGTCATTCCTTGAATATGAATATGTTCCTAGTTAAGTATGGTTGCCATGCAAGATTTATCGTCATCAAGTTTTCCAGTACAGCCTCTTGTCCACAAACTGAAGGGATCTCAATTACGGAATAAGTTGGCATCTCCATTGCTTGAAATTTTACTGTTTTAGTGAACCTTGCCTTCATCTCCTAGAGCATTCATCCTGGAAGATGTGTTGTTTTAAGTATTCGTCTTTCTTTTTTGAGATTTATGTCACCATCTCTTTCACATCACATCCTAATATGATTGATCATGTGACCGCTTTGTTGAGGTTAACAAATCCCATAGTTGGAGTAATACACATATCCACTGAAGTGTTTGTACTGGGTTTTTTTGAGTTAACATTGACTTTGAGTGCCATTTTGGATGCCGGACTGCACAGAAGAAGTCCATGTAGCCACTTTTTTAATGGAATTGTTTCTTTAAATAAAAGGGGACTAGAGAGGTCTAAGAGATTCCCACTTCAGAACATAGAGATAAAGACGTACAGGCTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAAAATATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGACCGTTATGAAGGTGGCGGGCGCTTTGGTGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGTTTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGAATGTTTTGTTGTTAGAAGATAGCACATTTTCTGGTTTATCTAGTAAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAGTTATATAGGATCTAGTTGCAGTACCGTGGCCCGAACGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTGTTCAGAGACAAGATAAATGCTCTGAAGAACGATGAATGGACAGAGACAGATTTAAGTTGACAATTTTGTGATTCCTAAAATGTTGAGCTGATTGTCGGACTGAGCTGACATACGAAGGTCGAGTCGGGGGGACCCCGAGGCTCGTTTGAATCGTAAGCCACAAAACAGATTAGTAAATACAATTCTAGAAGCAAGAGGCTCCTCTCCATATTTGTGTATTGAGCAGCACCTAGTTCTCTGCCGGATAGAGCTATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTATCCGGCAATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTTCATAAGCACCAAGAACTCTCCTGTCGATCTGATCATTGGTCAATTAGTTAAGATTTACGTCATTTACGTCTTCTATCGATCAGAAATTTAAATAATATCTCGTATGGATGATCTGTCATTATGAAGCTTGAAATTGGCACCAAGAACTCTCCTGTCGATCTGAACATTGGTCAATTAAGATTTACGTCATTTATGTCATCTATGGATCAGAAATTCAAATAATATCTCGTT

Coding sequence (CDS)

ATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGACCGTTATGAAGGTGGCGGGCGCTTTGGTGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGTTTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGA

Protein sequence

MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY

Homology

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BLAST of Carg01935 vs. NCBI nr
Match: XP_022956605.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 481.5 bits (1238), Expect = 4.1e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 98

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 99  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 158

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 159 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 218

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 219 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 270

[Close]

BLAST of Carg01935 vs. NCBI nr
Match: XP_022956607.1 (glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 481.5 bits (1238), Expect = 4.1e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 18  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 77

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 78  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 137

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 138 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 197

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 198 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 249

[Close]

BLAST of Carg01935 vs. NCBI nr
Match: XP_022956606.1 (glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 481.5 bits (1238), Expect = 4.1e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 29  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 88

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 89  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 148

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 149 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 208

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 209 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 260

[Close]

BLAST of Carg01935 vs. NCBI nr
Match: XP_022956608.1 (glycine-rich RNA-binding protein RZ1C-like isoform X4 [Cucurbita moschata] >XP_022956609.1 glycine-rich RNA-binding protein RZ1C-like isoform X4 [Cucurbita moschata] >XP_022956610.1 glycine-rich RNA-binding protein RZ1C-like isoform X4 [Cucurbita moschata] >KAG7031985.1 Glycine-rich RNA-binding protein RZ1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481.5 bits (1238), Expect = 4.1e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 232

[Close]

BLAST of Carg01935 vs. NCBI nr
Match: XP_023003545.1 (glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 481.1 bits (1237), Expect = 5.4e-132
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 18  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 77

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 78  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 137

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFP+NGYG
Sbjct: 138 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPINGYG 197

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 198 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 249

[Close]

BLAST of Carg01935 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 144/274 (52.55%), Postives = 173/274 (63.14%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGED--IDHGYR 60
           MLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G D    HG R
Sbjct: 39  MLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98

Query: 61  GGGDRS------------------ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTR 120
           GG D                      +DECFKCGR GHWARDCPS GGGRG     F +R
Sbjct: 99  GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSR 158

Query: 121 -SRLGDSD-RGDRFAG-----DNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSE 180
            S  G SD R DR+A      D  RY+DDRY+G  R+G RDRFD SR++ Y  RDRY S+
Sbjct: 159 ASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-YIPRDRYASD 218

Query: 181 RYPPGGDRF-GSSRYNNDSDRFPVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR---D 233
           RY    DRF G  RY+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   +
Sbjct: 219 RYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGE 278

[Close]

BLAST of Carg01935 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-55
Identity = 135/252 (53.57%), Postives = 160/252 (63.49%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GEDIDHGYRG 60
           M+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED+D   +G
Sbjct: 44  MVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103

Query: 61  GGDRS---ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD-RGDRFAGD 120
           GG  S     +DECFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GD 163

Query: 121 N------------NRYVDDRYE-GGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRF 180
                        +RY+D R +  GGR+  RDRFD+    KY  RD Y  ERY P GDRF
Sbjct: 164 RDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRF 223

Query: 181 GSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRPAPYDRPS 233
            S RY            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPS
Sbjct: 224 VSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPS 283

[Close]

BLAST of Carg01935 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-22
Identity = 88/247 (35.63%), Postives = 122/247 (49.39%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG-----EDIDH 60
           +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G      D D 
Sbjct: 39  VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDR 98

Query: 61  GYRGGGDRSARQ-------DECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDR 120
           G   G DR   +        +CFKCG+ GH+AR+CPS                   +S R
Sbjct: 99  GRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPS-------------------ESSR 158

Query: 121 GDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGS--SR 180
                           +GGGRF  +D   +S+D +YG +D    +RY    DR+G+   R
Sbjct: 159 ----------------DGGGRFSSKDDRYSSKDDRYGAKD----DRYGAKEDRYGAKDDR 218

Query: 181 YNNDSDRFPVNGYGKDRGYYRDGGPR--GVDKYG--SGGPARDEGR-----SYRNRPAPY 225
           Y++  DR+       DR   RDGG    G D+ G  +GG +RD G        R+  APY
Sbjct: 219 YSSKDDRYSSK---DDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPY 243

[Close]

BLAST of Carg01935 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 3   EKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGGGD 62
           ++ TGR RGFGF+TF D + M DAI  M+G++   R I+VN+A+ + G     G+RGGG 
Sbjct: 42  DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGG 101

Query: 63  RSARQDECFKCGRHGHWARDCPSVGGGRGR--GGDSFLTRSRLGDSDRGDRFAGDNNRYV 122
                   ++ G  G ++    S GGG GR  GG  + +    G S RG    G    Y 
Sbjct: 102 GG------YRSGGGGGYSGGGGSYGGGGGRREGGGGY-SGGGGGYSSRG----GGGGSYG 160

Query: 123 DDRYEGGGRFG 132
             R EGGG +G
Sbjct: 162 GGRREGGGGYG 160

[Close]

BLAST of Carg01935 vs. ExPASy Swiss-Prot
Match: Q05966 (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 3   EKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGGGD 62
           ++ TGR RGFGF+TF D + M DAI EM+G+E   R I+VN+A+ + G     G RGGG 
Sbjct: 40  DRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG--GGGGRGGGG 99

Query: 63  RSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYVDD 122
              R    +  G  G+  R     GGG G GG     R   G    G  + G   R    
Sbjct: 100 YGGRGGGGYGGGGGGYGDR---RGGGGYGSGGGG---RGGGGYGSGGGGYGGGGGRRDGG 159

Query: 123 RYEGG-GRFG 132
            Y GG G +G
Sbjct: 160 GYGGGDGGYG 161

[Close]

BLAST of Carg01935 vs. ExPASy TrEMBL
Match: A0A6J1GZJ5 (glycine-rich RNA-binding protein RZ1C-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.0e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 232

[Close]

BLAST of Carg01935 vs. ExPASy TrEMBL
Match: A0A6J1GY86 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.0e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 98

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 99  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 158

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 159 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 218

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 219 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 270

[Close]

BLAST of Carg01935 vs. ExPASy TrEMBL
Match: A0A6J1GWU1 (glycine-rich RNA-binding protein RZ1C-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.0e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 18  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 77

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 78  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 137

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 138 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 197

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 198 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 249

[Close]

BLAST of Carg01935 vs. ExPASy TrEMBL
Match: A0A6J1GX09 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.0e-132
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 29  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 88

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 89  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 148

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG
Sbjct: 149 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 208

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 209 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 260

[Close]

BLAST of Carg01935 vs. ExPASy TrEMBL
Match: A0A6J1KPS2 (glycine-rich RNA-binding protein RZ1C-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111496986 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 2.6e-132
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 60

Query: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120
           GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV
Sbjct: 61  GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYV 120

Query: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYG 180
           DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFP+NGYG
Sbjct: 121 DDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPINGYG 180

Query: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 233
           KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Sbjct: 181 KDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 232

[Close]

BLAST of Carg01935 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 144/274 (52.55%), Postives = 173/274 (63.14%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGED--IDHGYR 60
           MLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G D    HG R
Sbjct: 39  MLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98

Query: 61  GGGDRS------------------ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTR 120
           GG D                      +DECFKCGR GHWARDCPS GGGRG     F +R
Sbjct: 99  GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSR 158

Query: 121 -SRLGDSD-RGDRFAG-----DNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSE 180
            S  G SD R DR+A      D  RY+DDRY+G  R+G RDRFD SR++ Y  RDRY S+
Sbjct: 159 ASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-YIPRDRYASD 218

Query: 181 RYPPGGDRF-GSSRYNNDSDRFPVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR---D 233
           RY    DRF G  RY+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   +
Sbjct: 219 RYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGE 278

[Close]

BLAST of Carg01935 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-57
Identity = 135/252 (53.57%), Postives = 160/252 (63.49%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GEDIDHGYRG 60
           M+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED+D   +G
Sbjct: 44  MVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103

Query: 61  GGDRS---ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD-RGDRFAGD 120
           GG  S     +DECFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GD 163

Query: 121 N------------NRYVDDRYE-GGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRF 180
                        +RY+D R +  GGR+  RDRFD+    KY  RD Y  ERY P GDRF
Sbjct: 164 RDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRF 223

Query: 181 GSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRPAPYDRPS 233
            S RY            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPS
Sbjct: 224 VSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPS 283

[Close]

BLAST of Carg01935 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-57
Identity = 135/252 (53.57%), Postives = 160/252 (63.49%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GEDIDHGYRG 60
           M+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED+D   +G
Sbjct: 44  MVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103

Query: 61  GGDRS---ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD-RGDRFAGD 120
           GG  S     +DECFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GD 163

Query: 121 N------------NRYVDDRYE-GGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRF 180
                        +RY+D R +  GGR+  RDRFD+    KY  RD Y  ERY P GDRF
Sbjct: 164 RDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRF 223

Query: 181 GSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRPAPYDRPS 233
            S RY            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRPS
Sbjct: 224 VSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPS 283

[Close]

BLAST of Carg01935 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-23
Identity = 88/247 (35.63%), Postives = 122/247 (49.39%), Query Frame = 0


Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG-----EDIDH 60
           +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G      D D 
Sbjct: 39  VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDR 98

Query: 61  GYRGGGDRSARQ-------DECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDR 120
           G   G DR   +        +CFKCG+ GH+AR+CPS                   +S R
Sbjct: 99  GRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPS-------------------ESSR 158

Query: 121 GDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGS--SR 180
                           +GGGRF  +D   +S+D +YG +D    +RY    DR+G+   R
Sbjct: 159 ----------------DGGGRFSSKDDRYSSKDDRYGAKD----DRYGAKEDRYGAKDDR 218

Query: 181 YNNDSDRFPVNGYGKDRGYYRDGGPR--GVDKYG--SGGPARDEGR-----SYRNRPAPY 225
           Y++  DR+       DR   RDGG    G D+ G  +GG +RD G        R+  APY
Sbjct: 219 YSSKDDRYSSK---DDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPY 243

[Close]

BLAST of Carg01935 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 3   EKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGGGD 62
           ++ TGR RGFGF+TF D + M DAI  M+G++   R I+VN+A+ + G     G+RGGG 
Sbjct: 42  DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGG 101

Query: 63  RSARQDECFKCGRHGHWARDCPSVGGGRGR--GGDSFLTRSRLGDSDRGDRFAGDNNRYV 122
                   ++ G  G ++    S GGG GR  GG  + +    G S RG    G    Y 
Sbjct: 102 GG------YRSGGGGGYSGGGGSYGGGGGRREGGGGY-SGGGGGYSSRG----GGGGSYG 160

Query: 123 DDRYEGGGRFG 132
             R EGGG +G
Sbjct: 162 GGRREGGGGYG 160

The following BLAST results are available for this feature:

BLAST of Carg01935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956605.1	4.1e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata]	[more]
XP_022956607.1	4.1e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita moschata]	[more]
XP_022956606.1	4.1e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita moschata]	[more]
XP_022956608.1	4.1e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X4 [Cucurbita moschata] >XP_0...	[more]
XP_023003545.1	5.4e-132	99.57	glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg01935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	2.7e-57	52.55	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	1.1e-55	53.57	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	4.7e-22	35.63	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q03250	2.1e-09	38.17	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q05966	1.7e-08	38.46	Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1	[more]

BLAST of Carg01935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZJ5	2.0e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X4 OS=Cucurbita moschata OX=3...	[more]
A0A6J1GY86	2.0e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1GWU1	2.0e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X3 OS=Cucurbita moschata OX=3...	[more]
A0A6J1GX09	2.0e-132	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1KPS2	2.6e-132	99.57	glycine-rich RNA-binding protein RZ1C-like isoform X4 OS=Cucurbita maxima OX=366...	[more]

BLAST of Carg01935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	1.9e-58	52.55	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	7.9e-57	53.57	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	7.9e-57	53.57	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	3.4e-23	35.63	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	1.5e-10	38.17	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 69..85 e-value: 9.3E-5 score: 31.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 69..85 e-value: 1.1E-7 score: 31.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 70..85 score: 11.169136
None	No IPR available	GENE3D	4.10.60.10		coord: 63..111 e-value: 3.9E-8 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..232
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..194
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 1..194
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..40 e-value: 2.4E-8 score: 33.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..47 score: 10.991239
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..62 e-value: 1.0E-12 score: 50.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01935-RA	Carg01935-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding