Carg01908 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01908
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 8681572 .. 8683937 (+)
RNA-Seq Expression	Carg01908
Synteny	Carg01908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGATCGCGAAGGTCCCGAGTCAGGGAGGTCGCTGAGATGGATGAGGCCTTGAAACGATGGACACTGGCCTCCGCTTCTACCAATCAAAATTCTAATGCCTTGGAGCATTCCGTTGGCGGTGCTGCTCGCTCAGATCGTTCGGTTCCTGCTGAACTGTCCGAGGATTCTATCACTCAGGTTGGTCGGTTCCTCCTTCGCGAAGACTTTCCGAATCCTAGAGGATGTAGTTTATTATTAATTTCAAGTCGTAGCTGTCTGTTATACTTGTCCGAATCATTCCACTTAACATCATGTTATTTGTGCGGTATTTGTTTCTGTTGGTGCTGATTTCTTGAAAGAATTCTCTAATAGCGTTTTCTAAGGCAGATAGAATAAAATCGCTTATGATGTCGTAAGTTGCATTTTCTTTTATACTTCCACTGATGGCTACATTGAGTGCACAGAGGTTGTAGTATAGGTAGTTTTTAAACTTGATTTCTTAGAAAAATCCTCTAATCGTTCTTTTGAACAAGGCAGATAGAATAAAATTGCTGATTGAGTCGTAGGTTTTCTTTCCTTTCCTTTTATTTTCTGTATGCATTTATGTTTAAGTTGAGTTCTCAGAGGCGGTATTCAAAATAGTTTTTCCTCTAGGTAGATAAAATAAATAGCTGAGTGTATCATAGGTTTTATTTTCTACATGCATTTATGTCTAATTGAGTTCTCAGAGATGGTGTTCTAAGTAGCTTTTCCATATGATTTCTGGAAATAATTGTCTAATAACATTTTCTGTACAAAGTAGATAGAATAAATTGTTGACTGTATCATAGGCTTTCTTTCCTTTCCTATATGCATACATGTATACATTAAGTTCCCAGTGACGGTGATCTAAGTAGTTTTTTCCGTTTGATTCTCTGAAGACGAATTTTCTAATAACATATTTGGTACGACACAAATTGAAGAAAATTGGCGACTAAATATCATTGGTTTCCTTTCCTTTTCTATATGCATTAATGTCTACGATGAGCTCACAGAGGCGGTGTTCTTAGTAGTTTTTCCATTTGCTGGACGTTTTAATATGTTATGCTGATACATTCGATGATTCAATTCTTTTGATTAGTAAGTTGGAGACTCCTTGCATTATCTATTATAGCTTGTTGTACTCTTAATTTGTTTGCTGTGCTTTGTTGGTTTATTAATTAGCTAGTGTTGTTTGGTTGGTTAATTCGATGGAAAAGGCATGGTAAACAGACTTTTAAGCCCTTGCTACATAACTTGTGAGTCCCGCGTGCTTTGTTGCGATCTATAGTACTGAGTTTCCACAATATATATGTAGGTCGCCCATGGTTTACGCGATTGGCGCGGCATATAAAGGTATGGTGGTTTAGAGAGTTATTTGGCCTTATAGTGCAAGCGTTGGTGCAACACTCCAATCACGCATATTTGTGAATTTCTCTCCTTTTGTTCATCAGCCCCTTTCTCAGGTAATAAACCCTTTCTTCTGCATAACTTATTTTGCCATCTCCCTTTATTTCCGTTTTAGATTATAAGAATGATTGAGAATCGCAACAGATAAGAGCTATCCTTTCCTTTTGCCTCCTATGATGTTGAGATGTTATTTTCTCTCGCGCTCAACATATATTATCTCCTCCGTAAAAGAATACAAGAGCATTTGATATTAGGTAACCAACTCGTTTATTATTTTCATGTTGATCTCATGTCGAGTAATATAGTATTGTATCAAGCACGGTTATAACACAGTCGTTTGGCATGTAATTGTAAGGTCCAGTGTTTAATAATGAATCGACCAAGGTGGTAAGGGAAGTCATTTGCTTGACTTCGCTGCTAATGGCCTCCTCTCACAGGCACCAATTTTTGTTGACATCCACAACTGTACACATTTTTATTTTCTTAGGATTTAAAAGATTAGATTGTAAAATTAAATTGTGGGTAAACGAGGTATTCTGTGATAAATTTTATGCTTTTTCTTAATTTCAAAAATTCAAATTCCTTCCTGGAATTCGGACTCTTATCTTAAAAATATTCTATTGTAAACACGTTCTCCAACTATTGCCTCTCTAAATTCCTATGAAAATTTTAGAGAAAAATAGATTGAAATATACATTAAATGATTTGGAGGAGGTCGAAATCTTGGGATAAGCAAAATAAACAAATGAGACCTAATTCAGGTGGGAAATCATATTATTGGACATATGTACCCTTAAATTCGAAAATTTTTCTGGGAAGGCTCTGACTCTGACTCTGAGATTAGAACACACATACGTGGGGAAATATTTTCCCGTAGACTTAAATAAATTGACAATAACCTTATTTGGTTTATCTTTGATTCAGGCGTCCACCTTCAGTTTTCGGTCTATGCTTGA

mRNA sequence

GGAGGATCGCGAAGGTCCCGAGTCAGGGAGGTCGCTGAGATGGATGAGGCCTTGAAACGATGGACACTGGCCTCCGCTTCTACCAATCAAAATTCTAATGCCTTGGAGCATTCCGTTGGCGGTGCTGCTCGCTCAGATCGTTCGGTTCCTGCTGAACTGTCCGAGGATTCTATCACTCAGAATTCTCTAATAGCGTTTTCTAAGGCAGATAGAATAAAATCGCTTATGATGTCGTCGCCCATGGTTTACGCGATTGGCGCGGCATATAAAGGCGTCCACCTTCAGTTTTCGGTCTATGCTTGA

Coding sequence (CDS)

GGAGGATCGCGAAGGTCCCGAGTCAGGGAGGTCGCTGAGATGGATGAGGCCTTGAAACGATGGACACTGGCCTCCGCTTCTACCAATCAAAATTCTAATGCCTTGGAGCATTCCGTTGGCGGTGCTGCTCGCTCAGATCGTTCGGTTCCTGCTGAACTGTCCGAGGATTCTATCACTCAGAATTCTCTAATAGCGTTTTCTAAGGCAGATAGAATAAAATCGCTTATGATGTCGTCGCCCATGGTTTACGCGATTGGCGCGGCATATAAAGGCGTCCACCTTCAGTTTTCGGTCTATGCTTGA

Protein sequence

GGSRRSRVREVAEMDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQNSLIAFSKADRIKSLMMSSPMVYAIGAAYKGVHLQFSVYA

Homology

[Close]

BLAST of Carg01908 vs. NCBI nr
Match: KAG7032011.1 (hypothetical protein SDJN02_06053, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 9.1e-44
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   GGSRRSRVREVAEMDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 60
           GGSRRSRVREVAEMDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 1   GGSRRSRVREVAEMDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 60

Query: 61  NSLIAFSKADRIKSLMMSSPMVYAIGAAYKGVHLQFSVYA 101
           NSLIAFSKADRIKSLMMSSPMVYAIGAAYKGVHLQFSVYA
Sbjct: 61  NSLIAFSKADRIKSLMMSSPMVYAIGAAYKGVHLQFSVYA 100

[Close]

BLAST of Carg01908 vs. NCBI nr
Match: KAG6601216.1 (hypothetical protein SDJN03_06449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 4.8e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  GGSRRSRVREVAEMDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 60
          GGSRRSRVREVAEMDEALKRWTLASAS NQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 25 GGSRRSRVREVAEMDEALKRWTLASASANQNSNALEHSVGGAARSDRSVPAELSEDSITQ 84

[Close]

BLAST of Carg01908 vs. NCBI nr
Match: XP_022956633.1 (uncharacterized protein LOC111458305 isoform X2 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 14 MDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 61
          MDEALKRWTLASAS NQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 1  MDEALKRWTLASASANQNSNALEHSVGGAARSDRSVPAELSEDSITQ 47

[Close]

BLAST of Carg01908 vs. NCBI nr
Match: XP_022956632.1 (uncharacterized protein LOC111458305 isoform X1 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 14 MDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 61
          MDEALKRWTLASAS NQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 1  MDEALKRWTLASASANQNSNALEHSVGGAARSDRSVPAELSEDSITQ 47

[Close]

BLAST of Carg01908 vs. ExPASy TrEMBL
Match: A0A6J1GWW6 (uncharacterized protein LOC111458305 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458305 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 14 MDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 61
          MDEALKRWTLASAS NQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 1  MDEALKRWTLASASANQNSNALEHSVGGAARSDRSVPAELSEDSITQ 47

[Close]

BLAST of Carg01908 vs. ExPASy TrEMBL
Match: A0A6J1GXH9 (uncharacterized protein LOC111458305 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458305 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 14 MDEALKRWTLASASTNQNSNALEHSVGGAARSDRSVPAELSEDSITQ 61
          MDEALKRWTLASAS NQNSNALEHSVGGAARSDRSVPAELSEDSITQ
Sbjct: 1  MDEALKRWTLASASANQNSNALEHSVGGAARSDRSVPAELSEDSITQ 47

The following BLAST results are available for this feature:

BLAST of Carg01908 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032011.1	9.1e-44	100.00	hypothetical protein SDJN02_06053, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601216.1	4.8e-21	98.33	hypothetical protein SDJN03_06449, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022956633.1	3.4e-14	97.87	uncharacterized protein LOC111458305 isoform X2 [Cucurbita moschata]	[more]
XP_022956632.1	3.4e-14	97.87	uncharacterized protein LOC111458305 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg01908 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWW6	1.6e-14	97.87	uncharacterized protein LOC111458305 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GXH9	1.6e-14	97.87	uncharacterized protein LOC111458305 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg01908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01908-RA	Carg01908-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane