Carg01803 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01803
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 9237251 .. 9237712 (-)
RNA-Seq Expression	Carg01803
Synteny	Carg01803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTATATGCTTTTCTTATTAAAGAGGTAATAGAGTAACAATTTTAATGTGTTTATTGGGTGAATGCTTAGCATTATTGGAGTTGTTGGTTTGACAAATTGACACTGAGGACAGTGGTTCTGAGCTGTTTGTCTCACGCAGTCTCAACATTTTTGGTACTCTTTTCTTTCCCTTTTCCTTTTAAGCATTCTCTAATCTATATTCATGTGCTCCATGGTTAAGAGTAGAAGCTAATATTAAGGGTGGGCGTGGTGCAGGCCTGGGCAGTGCACAAGGCAGAGAATAGTTCCAATTTGGATAAGAAAGACAGAGGAAAAGCCATGGCACAGGCCGCAGGGCGCAGGGCAGACACAACTCTTAGCATTGCGCGTGCCAGTGACAGGAATACAGCATCCCATGTAACTCGCCCCGCCTCCGACATGCCTAAGCCTGCCTTTCTGGATATTACAGGCTGCACT

mRNA sequence

ATGCATGTATATGCTTTTCTTATTAAAGAGGCCTGGGCAGTGCACAAGGCAGAGAATAGTTCCAATTTGGATAAGAAAGACAGAGGAAAAGCCATGGCACAGGCCGCAGGGCGCAGGGCAGACACAACTCTTAGCATTGCGCGTGCCAGTGACAGGAATACAGCATCCCATGTAACTCGCCCCGCCTCCGACATGCCTAAGCCTGCCTTTCTGGATATTACAGGCTGCACT

Coding sequence (CDS)

ATGCATGTATATGCTTTTCTTATTAAAGAGGCCTGGGCAGTGCACAAGGCAGAGAATAGTTCCAATTTGGATAAGAAAGACAGAGGAAAAGCCATGGCACAGGCCGCAGGGCGCAGGGCAGACACAACTCTTAGCATTGCGCGTGCCAGTGACAGGAATACAGCATCCCATGTAACTCGCCCCGCCTCCGACATGCCTAAGCCTGCCTTTCTGGATATTACAGGCTGCACT

Protein sequence

MHVYAFLIKEAWAVHKAENSSNLDKKDRGKAMAQAAGRRADTTLSIARASDRNTASHVTRPASDMPKPAFLDITGCT

Homology

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BLAST of Carg01803 vs. NCBI nr
Match: KAG7032115.1 (hypothetical protein SDJN02_06158, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MHVYAFLIKEAWAVHKAENSSNLDKKDRGKAMAQAAGRRADTTLSIARASDRNTASHVTR 60
          MHVYAFLIKEAWAVHKAENSSNLDKKDRGKAMAQAAGRRADTTLSIARASDRNTASHVTR
Sbjct: 1  MHVYAFLIKEAWAVHKAENSSNLDKKDRGKAMAQAAGRRADTTLSIARASDRNTASHVTR 60

Query: 61 PASDMPKPAFLDITGCT 78
          PASDMPKPAFLDITGCT
Sbjct: 61 PASDMPKPAFLDITGCT 77

The following BLAST results are available for this feature:

BLAST of Carg01803 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032115.1	1.1e-33	100.00	hypothetical protein SDJN02_06158, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg01803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01803 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01803-RA	Carg01803-RA	mRNA