Carg01744 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01744
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTetratricopeptide repeat protein 38
LocationCarg_Chr04: 9550344 .. 9552057 (+)
RNA-Seq ExpressionCarg01744
SyntenyCarg01744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCGTAAGTGATAGTGGATATCGAATTAAACAAGAATCCAATTTCTATCCGATTCTGGCTGACAAGTTCTATCGTTTTTGGTTCAATTCCAGGGGATTTGGGGATTAATCTTCTGCGCCGAGAAAGCGACTCATTCTTACGGTCGCAGTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTTCTTCTTCTCCCTGGATCTTCCGCCATTGGCGTTCTTCAATTTTCGATTATCTGAAACGGGGTGTTGGGTTTCTTTCTTTTCTAATTGATGTAATGTAATTGACTCAAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGTTAGTTTTCACTTTTTTCTTTTTGGTATGAACATGTTCATTTCGTATCTTTGTGGTCATTGGAGATTTCTGTTGACAAATTGCTTGAATTGTCGCTATTTTGATAAGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGGTACTTGAAGATTGATCTCTTTTAAGCTCTTCTCTTTTCACCATTCATCAACATTTCCACTAATTTGATCTAAGAAACTTTCTACATCAAGAAGATCCTAGAGAAAATTTACAATTTTATAGAACATAATGGGATTTGAGTTGCCTTGAAGTCAGAATCCAGGATGAAGAATCTTTCAATTGCTAACTTGCTGTTATGGGATTTCTTTCAGAGATACAGTCTTATTTCTTGATATTTTCTTCTATTTGATTCTGCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTGCCATTTCTACCTAAGAAACTAGTTTTCCTACTTATCAGTTTATAGGTGGTTTTAATAAAGAAATTATTGAAAACCTGCTTTTATTGAGATAAAATGAAGAGCACAATAGGACATTAAAGGCTGCCTAGCCGAAACACCGAGACCCGATCACTTTACTAGTGGGGAATGCATGAATTTGAATGTTAAGTGTATCGATAGATTCTTCCAAATATTCACTTATTGAATACTATGAAGAATACATAAAATTTTAAGCTTTGAAGGATTAATTTGACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

mRNA sequence

ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

Coding sequence (CDS)

ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

Protein sequence

MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGHSQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARRGLDINKKDGWAQHAVSVI
Homology
[Close]
BLAST of Carg01744 vs. NCBI nr
Match: KAG7032174.1 (Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 562.4 bits (1448), Expect = 2.1e-156
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 

Query: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60
           MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH
Sbjct: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60

Query: 61  SQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK 120
           SQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK
Sbjct: 61  SQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK 120

Query: 121 HCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAV 180
           HCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAV
Sbjct: 121 HCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAV 180

Query: 181 ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE 240
           ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE
Sbjct: 181 ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE 240

Query: 241 LGCMEEAEKAARRGLDINKKDGWAQHAVSVI 272
           LGCMEEAEKAARRGLDINKKDGWAQHAVSVI
Sbjct: 241 LGCMEEAEKAARRGLDINKKDGWAQHAVSVI 271

[Close]
BLAST of Carg01744 vs. NCBI nr
Match: KAG6601396.1 (Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 510.0 bits (1312), Expect = 1.3e-140
Identity = 251/268 (93.66%), Postives = 255/268 (95.15%), Query Frame = 0 

Query: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60
           MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH
Sbjct: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60

Query: 61  SQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK 120
           SQTPTPR R +   L   +    +RTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK
Sbjct: 61  SQTPTPR-RDLGINLLRRESDSFLRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDK 120

Query: 121 HCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAV 180
           HCVLANVFAAYFLSSSDPSRVHHHLQAAK GLDRATPYEKAVYDAINCLMSNDRDDNVAV
Sbjct: 121 HCVLANVFAAYFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVYDAINCLMSNDRDDNVAV 180

Query: 181 ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE 240
           ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE
Sbjct: 181 ELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE 240

Query: 241 LGCMEEAEKAARRGLDINKKDGWAQHAV 269
           LGCMEEAEKAARRGLDINKKDGWAQHA+
Sbjct: 241 LGCMEEAEKAARRGLDINKKDGWAQHAL 267

[Close]
BLAST of Carg01744 vs. NCBI nr
Match: XP_022956844.1 (tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 1.7e-108
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. NCBI nr
Match: XP_022956843.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 1.7e-108
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. NCBI nr
Match: XP_023537841.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 5.4e-107
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK GLDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. ExPASy TrEMBL
Match: A0A6J1GYC7 (Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC111458418 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.1e-109
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. ExPASy TrEMBL
Match: A0A6J1H084 (Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC111458418 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.1e-109
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. ExPASy TrEMBL
Match: A0A6J1INE6 (Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 189/198 (95.45%), Postives = 194/198 (97.98%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEV TSSD+CISAINAFYDQVLSYGRRRSVILEAPVHDK CVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK  LDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           A+RGLDINKKDGWAQHA+
Sbjct: 181 AKRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. ExPASy TrEMBL
Match: A0A6J1IPU9 (Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 189/198 (95.45%), Postives = 194/198 (97.98%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEV TSSD+CISAINAFYDQVLSYGRRRSVILEAPVHDK CVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK  LDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           A+RGLDINKKDGWAQHA+
Sbjct: 181 AKRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. ExPASy TrEMBL
Match: A0A0A0KSI1 (Tetratricopeptide repeat protein 38 OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 8.7e-95
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDG+KLTKWGY +RTSSD CISAINAFYDQVLSYGR+RSVILEA VHDK CVLANV  A
Sbjct: 1   MEDGVKLTKWGYGIRTSSDDCISAINAFYDQVLSYGRKRSVILEATVHDKDCVLANVLGA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FLSSSDPSR H+HLQ AK GLDRATPYEKAV+DAI+CLMSNDRDDNVAVEL T+LLK+F
Sbjct: 61  HFLSSSDPSRAHYHLQTAKAGLDRATPYEKAVFDAISCLMSNDRDDNVAVELHTELLKNF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL SLK+AQVLCFY+G+ DLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLSSLKRAQVLCFYLGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]
BLAST of Carg01744 vs. TAIR 10
Match: AT1G27150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 266.2 bits (679), Expect = 3.0e-71
Identity = 125/198 (63.13%), Postives = 161/198 (81.31%), Query Frame = 0 

Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           ME  ++  +WGYEV TSSDACI AIN+++ QVLSYGR+R VILEAP++DK CVL ++ AA
Sbjct: 1   MEKTVRCVRWGYEVNTSSDACIDAINSYFQQVLSYGRKRKVILEAPLYDKDCVLGSILAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FLSSSDPSR + +++AA   L+++TPYEKAVY+A+  L+S DRDD++A E+ T+LLK F
Sbjct: 61  HFLSSSDPSRANSYVEAAASNLEQSTPYEKAVYEAVTYLISEDRDDDLAFEMHTKLLKRF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL SLK+AQ+L FYMG PD  L LVQQVLP NQEE +I+G+LAFPLLELG MEEA  A
Sbjct: 121 PKDLASLKRAQLLSFYMGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           +R+G +INK+D WA H +
Sbjct: 181 SRKGYEINKEDAWAHHCL 198

[Close]
BLAST of Carg01744 vs. TAIR 10
Match: AT1G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-59
Identity = 109/204 (53.43%), Postives = 151/204 (74.02%), Query Frame = 0 

Query: 65  TPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVL 124
           T  L+ M++  +    GYEV TSSD CI++IN++ DQVL YGR + VILEAP +D  CVL
Sbjct: 6   TMSLKCMKEESRFVSCGYEVNTSSDDCIASINSYSDQVLGYGREKKVILEAPNYDNDCVL 65

Query: 125 ANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLT 184
           AN+ AA++LSS DP R   +  AA+  L +AT YEKAV++A++ L+S + DD+VA+EL +
Sbjct: 66  ANILAAHYLSSFDPVRARSYALAAESRLGKATLYEKAVFEAVSYLLSENMDDDVALELHS 125

Query: 185 QLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCM 244
           +LLK FPKDLLS K+ + LC YMG  DLSL L +++LPQN+ + ++ GMLAF L+ELG +
Sbjct: 126 KLLKKFPKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHL 185

Query: 245 EEAEKAARRGLDINKKDGWAQHAV 269
            EAE+AAR+G +IN+ D WA HA+
Sbjct: 186 REAEEAARKGCEINENDSWAHHAL 209

[Close]
BLAST of Carg01744 vs. TAIR 10
Match: AT1G27110.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-59
Identity = 109/204 (53.43%), Postives = 151/204 (74.02%), Query Frame = 0 

Query: 65  TPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVL 124
           T  L+ M++  +    GYEV TSSD CI++IN++ DQVL YGR + VILEAP +D  CVL
Sbjct: 6   TMSLKCMKEESRFVSCGYEVNTSSDDCIASINSYSDQVLGYGREKKVILEAPNYDNDCVL 65

Query: 125 ANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLT 184
           AN+ AA++LSS DP R   +  AA+  L +AT YEKAV++A++ L+S + DD+VA+EL +
Sbjct: 66  ANILAAHYLSSFDPVRARSYALAAESRLGKATLYEKAVFEAVSYLLSENMDDDVALELHS 125

Query: 185 QLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCM 244
           +LLK FPKDLLS K+ + LC YMG  DLSL L +++LPQN+ + ++ GMLAF L+ELG +
Sbjct: 126 KLLKKFPKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHL 185

Query: 245 EEAEKAARRGLDINKKDGWAQHAV 269
            EAE+AAR+G +IN+ D WA HA+
Sbjct: 186 REAEEAARKGCEINENDSWAHHAL 209

[Close]
BLAST of Carg01744 vs. TAIR 10
Match: AT1G27110.3 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 8.5e-26
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 175 DDNVAVELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGML 234
           DD+VA+EL ++LLK FPKDLLS K+ + LC YMG  DLSL L +++LPQN+ + ++ GML
Sbjct: 2   DDDVALELHSKLLKKFPKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGML 61

Query: 235 AFPLLELGCMEEAEKAARRGLDINKKDGWAQHAV 269
           AF L+ELG + EAE+AAR+G +IN+ D WA HA+
Sbjct: 62  AFCLIELGHLREAEEAARKGCEINENDSWAHHAL 95

The following BLAST results are available for this feature:
BLAST of Carg01744 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032174.12.1e-156100.00Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. argy... [more]
KAG6601396.11.3e-14093.66Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022956844.11.7e-10899.49tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata][more]
XP_022956843.11.7e-10899.49tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata][more]
XP_023537841.15.4e-10798.48tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg01744 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01744 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GYC78.1e-10999.49Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC11145841... [more]
A0A6J1H0848.1e-10999.49Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC11145841... [more]
A0A6J1INE61.7e-10395.45Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 ... [more]
A0A6J1IPU91.7e-10395.45Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 ... [more]
A0A0A0KSI18.7e-9587.37Tetratricopeptide repeat protein 38 OS=Cucumis sativus OX=3659 GN=Csa_5G604090 P... [more]
BLAST of Carg01744 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27150.13.0e-7163.13Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G27110.17.6e-5953.43Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G27110.27.6e-5953.43Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G27110.38.5e-2657.45Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 140..271
e-value: 6.3E-8
score: 34.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 175..267
NoneNo IPR availablePANTHERPTHR16263:SF9BNAA09G29550D PROTEINcoord: 72..268
IPR033891Tetratricopeptide repeat protein 38PANTHERPTHR16263TETRATRICOPEPTIDE REPEAT PROTEIN 38coord: 72..268

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01744-RACarg01744-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding