Carg01642 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01642
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 2789976 .. 2791624 (+)
RNA-Seq ExpressionCarg01642
SyntenyCarg01642
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACTCTCACTCTGGTGGAACGTTACCATAATGAATGAGAACAAGCACTTAAAGCAAGAAGAGAGAGAGAAAGAAGAGACTGCAAAACAGGTAAGGAAACTTAAGCAAGCAGCCAGAGAGACTGAGAGAGACCAACTTTGGCGACTTGTGAATTGCTTGTGTTAGATAGGGACGAGAATTTATCGAACATCGAGCTGCCACAGCATGGCTGCTTCATCATTACTGTTCGGTATTACTATTGGACGTGAATTCTAAAATTTTCATCTCTAAACACTACAAGGTACAAATATAAGATAGTTGCATCATATTTTTATTTTTTATTTTTATTTTTATATATAGAACGGTGCTAACCTGTCAGCTACACTGTGCAGTTTCATCGATACATTCCCGGCCAAGGGAGGAGAGTTTGCATCATTTTTTTTTTCGTATATAGAACGATGCTAATCTGTCGGCTACATTGTGCAGTTTCATTGATTCATTCCCAGCCAAGGAGGAGAGTTTGCATCATTATATATATTTTTTTTTTGTATATAGAACGTTGCTAATCTGTCGGCTACATTGTGCAGTTTCATCAATTCATTCCCAACGGAGGATTGTTTGCATCATTTTTTTTCGTATATAGAAGAGTGCTAATCTATCGGCTACATTGTGTAGTTTCATTCATTCATTCCCAGCCAAAGAGGAGAGTTTGCATCATTTTTTTTTTTTCGTATATAGAACGGTGCTAATCTGTCAGCTACATTGTGTAGTTTCATCAATTCATTCCCAACGAAGGAGGAGAGTTTGCATCATTTTTTTTTTCTTATATAGAACAATGCTAATCTATCGGCTACATTGTGCAGTTTCATCGATTCATTTCCGACCAAGGAGGAGAGTTTGCATCATTTTTCTTTTTCTTTTTTTGGTATATAGAACGGTACTAATCTGTCGGCTACATTGTGCAGTTTCATCAATACATTTCTCGGCCAAGGAGAGAGATGGTGAGAGGAGGAGAGAGAGAGAGAGAGGTAAAGTGAGCAAACTTTTTTTTGGGCTTCTCATATTAGGATGAGAACATAATAATAATAATTCCACTCCTCTTTTTGATTCTTCCACCGCACCGCTACAACATATCCTTCCTGTCTCTGGAATGGTACCCAGAGGAGTGGAATCATCAATTTTTGTCTAACCAAATACGCAGCGCTCTCTTTTCTTTATTATTACCCTTTCTTTCAGCCTAATCATTGAATATATTTGAGTTATTCTTATTCCACCTTTTTTCCTTTTTCTTTATTTTATTTTTTAATTCTTACTTGTGTCAGACTGGCAGGATTGGCAGGATTGGATAATAAAAAAAAAATCCCATAATTGGCAGGTAAGATTATTTCCCTTGGTAATTTTCGAGGTGGGAAAAATTTTAAATTATTAATTATGGGTTCAAATTTTGCCTTGGTTTATACTTTTTGGGGTGAAAATTCATGGTAATTCTATTAGATTGTTATTAAGTTTCTTAAAAATGTTCATCCATGCATTAATTTTGATTTTTCTCTGAACTTTTAATAGGATGTGCTGAGGCTTTTGGCGTCCTCATGGTCGAGCAATTGGTAAGTCTTATCTATTTACCTCTCGAGACACAATATTTTGGGCTTCATGCGAAGATAAATAAA

mRNA sequence

ATGCTACTCTCACTCTGGTGGAACGTTACCATAATGAATGAGAACAAGCACTTAAAGCAAGAAGAGAGAGAGAAAGAAGAGACTGCAAAACAGATAGGGACGAGAATTTATCGAACATCGAGCTGCCACAGCATGGCTGCTTCATCATTACTGTTCGACTGGCAGGATTGGCAGGATTGGATAATAAAAAAAAAATCCCATAATTGGCAGGATGTGCTGAGGCTTTTGGCGTCCTCATGGTCGAGCAATTGGTAAGTCTTATCTATTTACCTCTCGAGACACAATATTTTGGGCTTCATGCGAAGATAAATAAA

Coding sequence (CDS)

ATGCTACTCTCACTCTGGTGGAACGTTACCATAATGAATGAGAACAAGCACTTAAAGCAAGAAGAGAGAGAGAAAGAAGAGACTGCAAAACAGATAGGGACGAGAATTTATCGAACATCGAGCTGCCACAGCATGGCTGCTTCATCATTACTGTTCGACTGGCAGGATTGGCAGGATTGGATAATAAAAAAAAAATCCCATAATTGGCAGGATGTGCTGAGGCTTTTGGCGTCCTCATGGTCGAGCAATTGGTAA

Protein sequence

MLLSLWWNVTIMNENKHLKQEEREKEETAKQIGTRIYRTSSCHSMAASSLLFDWQDWQDWIIKKKSHNWQDVLRLLASSWSSNW
Homology
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BLAST of Carg01642 vs. NCBI nr
Match: KAG7016380.1 (hypothetical protein SDJN02_21488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 9.3e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLLSLWWNVTIMNENKHLKQEEREKEETAKQIGTRIYRTSSCHSMAASSLLFDWQDWQDW 60
          MLLSLWWNVTIMNENKHLKQEEREKEETAKQIGTRIYRTSSCHSMAASSLLFDWQDWQDW
Sbjct: 1  MLLSLWWNVTIMNENKHLKQEEREKEETAKQIGTRIYRTSSCHSMAASSLLFDWQDWQDW 60

Query: 61 IIKKKSHNWQDVLRLLASSWSSNW 85
          IIKKKSHNWQDVLRLLASSWSSNW
Sbjct: 61 IIKKKSHNWQDVLRLLASSWSSNW 84

The following BLAST results are available for this feature:
BLAST of Carg01642 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016380.19.3e-42100.00hypothetical protein SDJN02_21488, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01642 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01642 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01642 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01642-RACarg01642-RAmRNA