Carg01637 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01637
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/kelch-repeat protein SKIP6
LocationCarg_Chr15: 2814384 .. 2816030 (-)
RNA-Seq ExpressionCarg01637
SyntenyCarg01637
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGTTCTCCCTGTGTTGCCTCCACTGCACCATCAGATGGAAGTGGGTTTTGTTATTACGTATCATCCGGTTTTATTAGGGGATATCATAGTGTGTTGAGGATTATTGAGAGGGAGTCCCACGTTGGCTAATTAAGGGATGATCATTGGTTTATAAGTAAGGAATACATTGCCATTGGAATAAGCCCTTTTGGAGAAACAAAAAACAAAGTCACAAGAGCTTATGTTCAAAGTGGACTATGTCATACCAATTGTGAAAGGTCGTGATTAATAATAGTCTACATCAGCTCATTAAGGGATTGATCATGAATTTATAAGAAATACATCTTCATTGGTATAAGGCATTTTGGGGAAATCAAAAGCAAAGCCACGAGAGCTTATGCTTTAAGTGGACCATATCATACCATTGTGGAAGGTCATGGTGGTTGAGGATTGTTGGGAGAGGAGTCCCACATCAGCTAATTAAGAGGTTGATCATGGGTTTATAAGTAAGGAATACATTTCCATTGGTATATCTTTCGAAGAAACAAAAGCAAGCTTCTGGTGCTCCTGTCAAGAACTGCATCGTGTGACTGAGGGTTTCAAAGAAAAGCCCAAGCCGGTGGAGGACACACCATTTGAATCTGGTGAGATTGGTTGGTTTCTGCTCGGAGGATGTCACAAGGAGGGGAGAAACATTTTTTTTATAAATGTGTGGAAATCTCTCCCGAGCAAACGTGTTTTAAAAACTTTGAAAGAAAGTCCAAAGAGAACAACATCATCCGTTAGCGGTGGAGTTGGACAGTTTGGCTTCCATGACGGAACAAGTTTGTACTCCAAAATGAAAACTTTGAATTGAAGACTCTACATTCATACAACAGTTGAACAATACAATACAAACACAATTGACAGTTGACAGAAAGTAACAACACAATTATTTTTAAGGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGGTATAACGAAATCATTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

mRNA sequence

ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

Coding sequence (CDS)

ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

Protein sequence

MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
Homology
[Close]
BLAST of Carg01637 vs. NCBI nr
Match: KAG7016385.1 (hypothetical protein SDJN02_21493, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.8 bits (1218), Expect = 8.7e-130
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0 

Query: 1   MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRI 60
           MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRI
Sbjct: 1   MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRI 60

Query: 61  DHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIE 120
           DHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIE
Sbjct: 61  DHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIE 120

Query: 121 PRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDS 180
           PRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDS
Sbjct: 121 PRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDS 180

Query: 181 FKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA 236
           FKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
Sbjct: 181 FKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA 235

[Close]
BLAST of Carg01637 vs. NCBI nr
Match: OAY80878.1 (F-box/kelch-repeat protein SKIP6 [Ananas comosus])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 49  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFA 108
           L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A
Sbjct: 328 LKSLIDRRLHCIDHKLRLSSNSRPLLLWLISRIPDPCHQPRELLHHKRFLGKLGCDNMLA 387

Query: 109 RYRFPSGRKLIEPR 123
             R PSG +L E R
Sbjct: 388 WQRLPSGHELGETR 401

[Close]
BLAST of Carg01637 vs. ExPASy TrEMBL
Match: A0A199VV63 (F-box/kelch-repeat protein SKIP6 OS=Ananas comosus OX=4615 GN=ACMD2_01124 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 49  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFA 108
           L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A
Sbjct: 328 LKSLIDRRLHCIDHKLRLSSNSRPLLLWLISRIPDPCHQPRELLHHKRFLGKLGCDNMLA 387

Query: 109 RYRFPSGRKLIEPR 123
             R PSG +L E R
Sbjct: 388 WQRLPSGHELGETR 401

The following BLAST results are available for this feature:
BLAST of Carg01637 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016385.18.7e-130100.00hypothetical protein SDJN02_21493, partial [Cucurbita argyrosperma subsp. argyro... [more]
OAY80878.11.1e-0445.95F-box/kelch-repeat protein SKIP6 [Ananas comosus][more]
BLAST of Carg01637 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01637 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A199VV635.5e-0545.95F-box/kelch-repeat protein SKIP6 OS=Ananas comosus OX=4615 GN=ACMD2_01124 PE=4 S... [more]
BLAST of Carg01637 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01637-RACarg01637-RAmRNA