Carg01590 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01590
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein MKS1-like
Location	Carg_Chr15: 3138983 .. 3139474 (-)
RNA-Seq Expression	Carg01590
Synteny	Carg01590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

mRNA sequence

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

Coding sequence (CDS)

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

Protein sequence

MSSSLCSSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLHN

Homology

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.0 bits (855), Expect = 7.5e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSSSLCSSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDP 60
           MSSSLCSSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDP
Sbjct: 1   MSSSLCSSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDP 60

Query: 61  TQFKDLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIF 120
           TQFKDLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIF
Sbjct: 61  TQFKDLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIF 120

Query: 121 TPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLHN 164
           TPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLHN
Sbjct: 121 TPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLHN 163

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_022939148.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTNHQG ERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKE+QLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHH PNTTMIMSTNHQGAERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_022993351.1 (protein MKS1-like [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKE+QLQGPRPAALKITKDSHKIGKPPHRPVIIY+VSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYSVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTN  GAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 116/169 (68.64%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGK--------PPHRPVIIYTVSPKVIHTDPTQFK 72
           M ERKE+ LQGPRPAALKITKDSHKI K        PPHRPVIIYTVSPK+IHT+PT+FK
Sbjct: 1   MPERKEVHLQGPRPAALKITKDSHKIKKPPLPPPHPPPHRPVIIYTVSPKIIHTEPTEFK 60

Query: 73  DLVQRLTGHKPSSHDS--HHPPNTTMIMSTN--HQGAERVGHGILSPTPGLLPPIPANIF 132
           DLVQRLTG +PSS +    HP + +M M+TN   QG ERVGHGILSPTPGLLPPI +NIF
Sbjct: 61  DLVQRLTGLRPSSSNDALDHPTSMSMSMNTNSIDQGVERVGHGILSPTPGLLPPISSNIF 120

Query: 133 TPTPPQSA------ELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           TP PPQ+A      + SP T FF+D SPIA N FSSSLDFF QNFPD H
Sbjct: 121 TP-PPQAAMAAAATDPSPFTQFFQDFSPIATNHFSSSLDFFQQNFPDFH 168

[Close]

BLAST of Carg01590 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-13
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKP-----------------PHRPVIIYTVSPKVIH 74
           ++++LQ+ GPRP+ L + KDSHKI KP                 P  PV+IY VSPKV+H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 75  TDPTQFKDLVQRLT--------------------------------GHKPSSHDSHHPPN 133
              ++F ++VQRLT                                G +P++ D     N
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

[Close]

BLAST of Carg01590 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 0


Query: 23  GPRPAALKITKDSHKI-------------------------GKPPHRPVIIYTVSPKVIH 82
           GP+P  LK+  DSHKI                          +PP  PV IYTV+P++IH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 83  TDPTQFKDLVQRLTGH-------KPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPG 120
           T P  F  LVQRLTG          SS  +  P +T+ ++ T+        HG++SP   
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTS--------HGLISPAAR 132

[Close]

BLAST of Carg01590 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 24  PRPAALKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 80
           P P  LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Carg01590 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 20 QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 73
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of Carg01590 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.1e-80
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTNHQG ERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.9e-78
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKE+QLQGPRPAALKITKDSHKIGKPPHRPVIIY+VSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYSVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTN  GAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.7e-45
Identity = 113/178 (63.48%), Postives = 126/178 (70.79%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDL 72
           M E+KELQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 73  VQRLTGH--KPSS-------HDSHHPPNTTMIMST-----NHQGAER-VGHGILSPTPGL 132
           VQRLTGH   PSS       HD H PP+   I +T     +  G +R + HGILSPTPGL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 133 LPPIPANIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           LPPI + IF P PPQ      + +L+ LT FF DLSPIA N FSSSLDFF QNFPD H
Sbjct: 121 LPPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Carg01590 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.5e-44
Identity = 110/176 (62.50%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDL 72
           M E+KELQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPTQFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 73  VQRLTGH--KPSSHDSH-----HPP------NTTMIMSTNHQGAER-VGHGILSPTPGLL 132
           VQRLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120

Query: 133 PPIPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           PPI   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of Carg01590 vs. ExPASy TrEMBL
Match: A0A1S3B4N1 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.0e-42
Identity = 106/174 (60.92%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDLVQ 74
           ++++LQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPTQFKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 75  RLTGH--KPSSHDSH-----HPP------NTTMIMSTNHQGAER-VGHGILSPTPGLLPP 134
           RLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 135 IPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           I   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of Carg01590 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-14
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKP-----------------PHRPVIIYTVSPKVIH 74
           ++++LQ+ GPRP+ L + KDSHKI KP                 P  PV+IY VSPKV+H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 75  TDPTQFKDLVQRLT--------------------------------GHKPSSHDSHHPPN 133
              ++F ++VQRLT                                G +P++ D     N
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

[Close]

BLAST of Carg01590 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11
Identity = 68/231 (29.44%), Postives = 87/231 (37.66%), Query Frame = 0


Query: 23  GPRPAALKITKDSHKI-------------------------GKPPHRPVIIYTVSPKVIH 82
           GPRP  LK+  DSHKI                          +PP  PVIIYTVSP++IH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 83  TDPTQFKDLVQRLTGHKPSSHDSHH-------PPNTTMIMSTNH---------------- 142
           T P  F  LVQRLTG   +S  S         P + + ++ T+H                
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPAARFAVTEKAN 132

Query: 143 ----------------------------------QGAERVGH---GILSPTPGLLPPIPA 161
                                             QG ER      GILSP P  LP +  
Sbjct: 133 ISNELGTFVGGEGTMDQYYHYHHHHHHQEQQHQNQGFERPSFHHAGILSPGPNSLPSVSP 192

[Close]

BLAST of Carg01590 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 0


Query: 23  GPRPAALKITKDSHKI-------------------------GKPPHRPVIIYTVSPKVIH 82
           GP+P  LK+  DSHKI                          +PP  PV IYTV+P++IH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 83  TDPTQFKDLVQRLTGH-------KPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPG 120
           T P  F  LVQRLTG          SS  +  P +T+ ++ T+        HG++SP   
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTS--------HGLISPAAR 132

[Close]

BLAST of Carg01590 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 24  PRPAALKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 80
           P P  LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Carg01590 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 20 QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 73
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

The following BLAST results are available for this feature:

BLAST of Carg01590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578908.1	7.5e-88	100.00	Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Prot...	[more]
XP_022939148.1	1.7e-79	98.67	protein MKS1-like [Cucurbita moschata]	[more]
XP_023551504.1	6.3e-79	98.00	protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like...	[more]
XP_022993351.1	2.0e-77	96.67	protein MKS1-like [Cucurbita maxima]	[more]
XP_038885910.1	1.1e-49	68.64	protein MKS1-like [Benincasa hispida]	[more]

BLAST of Carg01590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	8.2e-13	33.14	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	2.1e-08	33.33	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9LS54	4.7e-08	47.76	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	9.7e-06	48.44	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Carg01590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKV1	8.1e-80	98.67	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	9.9e-78	96.67	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]
A0A0A0KI80	1.7e-45	63.48	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A5A7UZA1	5.5e-44	62.50	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]
A0A1S3B4N1	3.0e-42	60.92	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1	[more]

BLAST of Carg01590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	5.8e-14	33.14	MAP kinase substrate 1	[more]
AT1G21326.1	2.1e-11	29.44	VQ motif-containing protein	[more]
AT1G21320.1	1.5e-09	33.33	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	3.3e-09	47.76	VQ motif-containing protein	[more]
AT1G68450.1	6.9e-07	48.44	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 50..72 e-value: 4.5E-11 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 10..87
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 10..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01590-RA	Carg01590-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus