Carg01506 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01506
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 3578866 .. 3580113 (-)
RNA-Seq ExpressionCarg01506
SyntenyCarg01506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCTATGGTGAAGACATGTTGGTGAAATGGCCTGTTCTTAACACTAAAAACTACTTTCTTTCTTGTGTAGAAATTAATAACTTGATCACAGCAACAAAATAATTTGACATGTTTACAAAATATTTAGGAGAATTGTATCATATAAACTACAAAATATGTCGTTGTTTTGGCTTTCTTGCAGGTGAACACTTCTCGAAATACCTTCTGGTTTCGGGTTTGAGATTTGCAGAGAAAGATTTGGACTCGGCAAAACTAACTTTTTTTATACAGACAGAAATAACGCTGTTCTTTGACTATTACAATGCAAAAGTTGAAAGGAACCGTCCTCACTTTTAGAATAGAGATGATGTTGAGGATTGTTGGAAGGAGAGTCTCACATTGGTTAATTAAAGGGTTGATCATAGGTTTATAAATAAAGAAATACATCTTCATTGGTATGAAGTTTTTTCAACGAAACTTTTCAAGGAAATAAAAAACAAAACCATAAAATCTTATGCTCAAAGTAGACAATTTGTATTATTGTGGATGTTACTGGTTCCTAACAAATGAGTCTTACGTAAATACCTTTACGTTTCACGGAAAAGTGACTTTGCTACTTCTTGAATCAACCTGGAAAGCGTCAATTTAGCACCGAGAATTATAAAAGGCATTCTTCACAAGATTAAACAAGGGATCTTGATCTCAATCCCTATTATACAAATAATGTTAAATTCCGTTGCACTAACAGTTGGGAAACTTTGGATACATATAGCCAGCTATATGCATGGTTTCTTTCTATGTTGAATCTGGGAACATAAATGGCAATCTCTCGAACAAAACTACAAGCATATTTACATCGTCAAAGCTCTCGAACAATTTATATTATTAGTTGCTGTGAGGAGACAAAAGCAACATCTACCAAGGAGAAGCCTCATATTCTATCCATCACCAGCTACTCAAAGATCGAATCCCACATTTCATGCTGAAGAGAACTCGAAACCACTCCTTGAACGAGAAACAAAAGCAGGACCTTCACCTTTCATCCTTCTGTGATGCCACATCCTTGTAGAGCAGAAAATAGTTCTTTGACGATTTGGAAAACAGCTCACTTTGATTGTCTTTAGAAGTTATTAACAGAGATGTCATCGGCTGCACAGAGTTGAGGAGAAGTTGAAGCTGAGAACGCAGATACGAAGCTTCCTGATCACTTTCACAAGATTCGGCAATAAGTTGCAGAAGTTTGGAACTCTGGTCTTGAGATAA

mRNA sequence

ATGGCTGCCTATGGTGAAGACATGTTGGTGAAATGGCCTGTGAACACTTCTCGAAATACCTTCTGGTTTCGGAGATGTCATCGGCTGCACAGAGTTGAGGAGAAGTTGAAGCTGAGAACGCAGATACGAAGCTTCCTGATCACTTTCACAAGATTCGGCAATAAGTTGCAGAAGTTTGGAACTCTGGTCTTGAGATAA

Coding sequence (CDS)

ATGGCTGCCTATGGTGAAGACATGTTGGTGAAATGGCCTGTGAACACTTCTCGAAATACCTTCTGGTTTCGGAGATGTCATCGGCTGCACAGAGTTGAGGAGAAGTTGAAGCTGAGAACGCAGATACGAAGCTTCCTGATCACTTTCACAAGATTCGGCAATAAGTTGCAGAAGTTTGGAACTCTGGTCTTGAGATAA

Protein sequence

MAAYGEDMLVKWPVNTSRNTFWFRRCHRLHRVEEKLKLRTQIRSFLITFTRFGNKLQKFGTLVLR
Homology
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BLAST of Carg01506 vs. NCBI nr
Match: KAG7016513.1 (hypothetical protein SDJN02_21622, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAAYGEDMLVKWPVNTSRNTFWFRRCHRLHRVEEKLKLRTQIRSFLITFTRFGNKLQKFG 60
          MAAYGEDMLVKWPVNTSRNTFWFRRCHRLHRVEEKLKLRTQIRSFLITFTRFGNKLQKFG
Sbjct: 1  MAAYGEDMLVKWPVNTSRNTFWFRRCHRLHRVEEKLKLRTQIRSFLITFTRFGNKLQKFG 60

Query: 61 TLVLR 66
          TLVLR
Sbjct: 61 TLVLR 65

The following BLAST results are available for this feature:
BLAST of Carg01506 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016513.13.1e-29100.00hypothetical protein SDJN02_21622, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01506 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01506 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01506 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01506-RACarg01506-RAmRNA