Carg01432 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01432
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 4023523 .. 4026105 (-)
RNA-Seq ExpressionCarg01432
SyntenyCarg01432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAGGCGCCGAGGAATGGAAAAAGACAACACAAGAAGAAACAGGCAAATGGCCGAGGTGAGAGATCTATACAATTCTAATCAGGTGGAGCCAGTGGCTGCAACGGGAATTGTATGAAGAACTTTACCGGTACCGCCACCGAGTCTACCACGGCCAATCCCAGTTCTTTGGGAATTAGATTCCCTCCTTTCGGCTGTTCTCCGCCTGTTATCATCTCCAGTGAGCCCTGGCTTTGATTGCAGACTACTCCCTGAGCCAGGATGTGGCTGGCCTTCCTCTTTGGTGTTCTGTCTTGATGTCCAGGAGTCAGTTGAAATGCCCCAATGGTGCTGTTGAACACTGCCCACAAAACTGCTGCTACCAGAGGATTCCTGATCATCTGTATCTCCCCCTCCAGCAGGAACGACAGGGCCGCCGCCCCTTCTCACAGTCGTGTACTTGTGAAAGCTCGGTTCCAGAATATCGTCATTCATGGCAACTTCTGATTCAACAAAAGGGTCTCTGATATCAACCATGCCCTTCAGATTGCCACTGTAAGGTACGCTATGCTCATTTCTACTGGATTGATATGTTGGTGGATTGCTTCTATCCTCAGAGAAAACACAGGAGAAATTCGAACCTGTTGCGGAATTGAGATCAGCAACTGCTTCAACAATGGAACAGGCCTTGGTTACACAAGCTGGAAGAGAAACAGGGTTGGCATTCTTTTGATGGAAATTCTGAATGTCTTGAAGCAACATCTTGGTGTAAGATGGTGTTTGACTTTGATTCAGCAAAGCTTCTGGATTAATATCTAATTCTCTTGATTGCCTTGCAGATCTGCTCCTTGCCAGTCCCTGGGGTTTCTGATGCTCTACCACGACCACCTCTGTGTTTGACAATGGTGTTGTGGGGGCTATAATATTCACAACAGCTCTGGTAGCTGCGCTGCCTGATTTGTTGCTATTCACTTGGGAAACTGTTACTTTGTGACAACTTTTGGAATCAGTTTTTGGCTTCTGTGACAAAAGATTGCAAGGTATGAATCAATATTAAAAGACTTGCTGGACACTTAAAGTCATGAAAGAATAGGGTGTGTGTAGTTTTCAAATGTACCTGGTAGACACCATTAATGGAGTCCTTAGCATTCAGTTCTTCCGTTTCCCTTTTGCTTCTGTTGTTTATCCTTTTATGTGGCTGTGAATTTGTATCAATTTCACTCAATGGGTTTCTTCTGTATGGAGATTGCTCTGCTTTTCTTGATGAGCTGCGGCTGAGAGATGGCTGCTGCTGCTGCTGGTTTTCGTCGGCGGCTTTAACATGTTCAATGTTTCTTGCAGGAGACTGTGAGCGAGGTGATGAAGCAACCCTTGAACCCGCCATGGCAGTCGCCTCGCCGACGTTTCTTTTAACTGATATCCTCTTAACAGCAGTCACCGTCGCCGAATCATTGTCTCCATAACCACCAGTGACATTGTTGCTCTTGTCCATTTCCATGTGACAGACTGTTGCAGGGACCGAAACCATTTTTGCTGGTCGACTGAGACCACCGCCACCGCCGTTATTGGCATTGGCATTGGAAGTATTCATTGCAGAGGGCTCTGCTGACCGTCGGCCAGGTGACCGGCTAACACGCCTCTCTCGGCTGCTGGACCGTTGGTTTTGATCTCTCTCCCTACTTGGGGTTCTCCTCCTCCCTTGAGAGGAAGAGTGTCTAGAAGACTGGCGGTGGCCCTGCCTTAGATGGTGGCGTTTCTCCGCCGGAGTTCCAACGTCGTCAACCTCAACAGAAAAGGGATTCTTCCCATCTTCATCTTCATCACCAAAATTGGCAGAATCAACACCATCTCTGCCACAATGATCAAAATCATTGCTTCTCTTAGAACCAGAGTACCTTCTTCCATTCCCTTTAGCAGATGAACTCCGACTCAATCTTCCACACTGAATCAAAATGGCATCAACTTCCTCTTTAGTACAGCTCGAAGTTCTCACCAAACCAACCTTCAAATTTTCACCCAAAGCTCCAGACTCCAAAATCTCACAGGAAGAAGAAGACACATTACCCTCTTCAGGAGGAGGAACAAGAAGAAGAGAAGCCCCATTTTTGTCTCTTCCATCGTGACTCTTCCTGTGCTTAATCACAAAAACCTCCTTCTTCTTCACAGGGTACTCACTTCTTTCTTCTTTCCCCTCACCATTTTCTTGCCCTGTTTTCTTGCTGCTCTTAATTTTCAGGTCAGTGGTGGGCAGCTGAGAAATTGAGATGATGGGTTTGCCGCCATTGCAGGAGCTGGGATCTGGAGGAGGTACATCAGTAGAAGAAACAGCAGAAGGTAAAGTCTTCTTCTTTTTGCTCAAACAAGCACCCATTAGAGAGGATCTATGGCAGTTTTTAGTAGACTAAACTCTAGAAATCCTCCAAAGAGTTGGGGATATGGAAGAAACTCAGCTATAGAGAGAGATTTGAAAATGGGTTTAGTGAGGAGAGACAGAGAGACAAGAAAAGAGGGTTAACGGGTGGCGCTCTGTTCAAGAAGCATTTTCAAAATTCTGCAACTTTTATATTTAATGAAGAGAGAGAAAGAGGAGAGAGAAAGTGG

mRNA sequence

ATGCAGAAGGCGCCGAGGAATGGAAAAAGACAACACAAGAAGAAACAGGCAAATGGCCGAGGTGGAGCCAGTGGCTGCAACGGGAATTGTATGAAGAACTTTACCGGTACCGCCACCGAGTCTACCACGGCCAATCCCAGTTCTTTGGGAATTAGATTCCCTCCTTTCGGCTGTTCTCCGCCTGTTATCATCTCCAACTACTCCCTGAGCCAGGATGTGGCTGGCCTTCCTCTTTGGTGTTCTGTCTTGATGTCCAGGAGTCAGTTGAAATGCCCCAATGGTGCTGTTGAACACTGCCCACAAAACTGCTGCTACCAGAGGATTCCTGATCATCTGTATCTCCCCCTCCAGCAGGAACGACAGGGCCGCCGCCCCTTCTCACAGTCGTGTACTTGTGAAAGCTCGGTTCCAGAATATCGTCATTCATGGCAACTTCTGATTCAACAAAAGGGAGACTGTGAGCGAGGTGATGAAGCAACCCTTGAACCCGCCATGGCAGTCGCCTCGCCGACGTTTCTTTTAACTGATATCCTCTTAACAGCAGTCACCGTCGCCGAATCATTGTCTCCATAACCACCAGTGACATTGTTGCTCTTGTCCATTTCCATGTGACAGACTGTTGCAGGGACCGAAACCATTTTTGCTGGTCGACTGAGACCACCGCCACCGCCGTTATTGGCATTGGCATTGGAAGTATTCATTGCAGAGGGCTCTGCTGACCGTCGGCCAGGTGACCGGCTAACACGCCTCTCTCGGCTGCTGGACCGTTGGTTTTGATCTCTCTCCCTACTTGGGGTTCTCCTCCTCCCTTGAGAGGAAGAGTGTCTAGAAGACTGGCGGTGGCCCTGCCTTAGATGGTGGCGTTTCTCCGCCGGAGTTCCAACGTCGTCAACCTCAACAGAAAAGGGATTCTTCCCATCTTCATCTTCATCACCAAAATTGGCAGAATCAACACCATCTCTGCCACAATGATCAAAATCATTGCTTCTCTTAGAACCAGAGTACCTTCTTCCATTCCCTTTAGCAGATGAACTCCGACTCAATCTTCCACACTGAATCAAAATGGCATCAACTTCCTCTTTAGTACAGCTCGAAGTTCTCACCAAACCAACCTTCAAATTTTCACCCAAAGCTCCAGACTCCAAAATCTCACAGGAAGAAGAAGACACATTACCCTCTTCAGGAGGAGGAACAAGAAGAAGAGAAGCCCCATTTTTGTCTCTTCCATCGTGACTCTTCCTGTGCTTAATCACAAAAACCTCCTTCTTCTTCACAGGGTACTCACTTCTTTCTTCTTTCCCCTCACCATTTTCTTGCCCTGTTTTCTTGCTGCTCTTAATTTTCAGGTCAGTGGTGGGCAGCTGAGAAATTGAGATGATGGGTTTGCCGCCATTGCAGGAGCTGGGATCTGGAGGAGGTACATCAGTAGAAGAAACAGCAGAAGGTAAAGTCTTCTTCTTTTTGCTCAAACAAGCACCCATTAGAGAGGATCTATGGCAGTTTTTAGTAGACTAAACTCTAGAAATCCTCCAAAGAGTTGGGGATATGGAAGAAACTCAGCTATAGAGAGAGATTTGAAAATGGGTTTAGTGAGGAGAGACAGAGAGACAAGAAAAGAGGGTTAACGGGTGGCGCTCTGTTCAAGAAGCATTTTCAAAATTCTGCAACTTTTATATTTAATGAAGAGAGAGAAAGAGGAGAGAGAAAGTGG

Coding sequence (CDS)

ATGCAGAAGGCGCCGAGGAATGGAAAAAGACAACACAAGAAGAAACAGGCAAATGGCCGAGGTGGAGCCAGTGGCTGCAACGGGAATTGTATGAAGAACTTTACCGGTACCGCCACCGAGTCTACCACGGCCAATCCCAGTTCTTTGGGAATTAGATTCCCTCCTTTCGGCTGTTCTCCGCCTGTTATCATCTCCAACTACTCCCTGAGCCAGGATGTGGCTGGCCTTCCTCTTTGGTGTTCTGTCTTGATGTCCAGGAGTCAGTTGAAATGCCCCAATGGTGCTGTTGAACACTGCCCACAAAACTGCTGCTACCAGAGGATTCCTGATCATCTGTATCTCCCCCTCCAGCAGGAACGACAGGGCCGCCGCCCCTTCTCACAGTCGTGTACTTGTGAAAGCTCGGTTCCAGAATATCGTCATTCATGGCAACTTCTGATTCAACAAAAGGGAGACTGTGAGCGAGGTGATGAAGCAACCCTTGAACCCGCCATGGCAGTCGCCTCGCCGACGTTTCTTTTAACTGATATCCTCTTAACAGCAGTCACCGTCGCCGAATCATTGTCTCCATAA

Protein sequence

MQKAPRNGKRQHKKKQANGRGGASGCNGNCMKNFTGTATESTTANPSSLGIRFPPFGCSPPVIISNYSLSQDVAGLPLWCSVLMSRSQLKCPNGAVEHCPQNCCYQRIPDHLYLPLQQERQGRRPFSQSCTCESSVPEYRHSWQLLIQQKGDCERGDEATLEPAMAVASPTFLLTDILLTAVTVAESLSP
Homology
[Close]
BLAST of Carg01432 vs. NCBI nr
Match: KAG7016586.1 (hypothetical protein SDJN02_21696, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.0e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MQKAPRNGKRQHKKKQANGRGGASGCNGNCMKNFTGTATESTTANPSSLGIRFPPFGCSP 60
           MQKAPRNGKRQHKKKQANGRGGASGCNGNCMKNFTGTATESTTANPSSLGIRFPPFGCSP
Sbjct: 1   MQKAPRNGKRQHKKKQANGRGGASGCNGNCMKNFTGTATESTTANPSSLGIRFPPFGCSP 60

Query: 61  PVIISNYSLSQDVAGLPLWCSVLMSRSQLKCPNGAVEHCPQNCCYQRIPDHLYLPLQQER 120
           PVIISNYSLSQDVAGLPLWCSVLMSRSQLKCPNGAVEHCPQNCCYQRIPDHLYLPLQQER
Sbjct: 61  PVIISNYSLSQDVAGLPLWCSVLMSRSQLKCPNGAVEHCPQNCCYQRIPDHLYLPLQQER 120

Query: 121 QGRRPFSQSCTCESSVPEYRHSWQLLIQQKGDCERGDEATLEPAMAVASPTFLLTDILLT 180
           QGRRPFSQSCTCESSVPEYRHSWQLLIQQKGDCERGDEATLEPAMAVASPTFLLTDILLT
Sbjct: 121 QGRRPFSQSCTCESSVPEYRHSWQLLIQQKGDCERGDEATLEPAMAVASPTFLLTDILLT 180

Query: 181 AVTVAESLSP 191
           AVTVAESLSP
Sbjct: 181 AVTVAESLSP 190

The following BLAST results are available for this feature:
BLAST of Carg01432 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016586.11.0e-104100.00hypothetical protein SDJN02_21696, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01432 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01432 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01432 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01432-RACarg01432-RAmRNA