Carg01426 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01426
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein TIC 40, chloroplastic-like isoform X1
Location	Carg_Chr15: 4066542 .. 4073139 (-)
RNA-Seq Expression	Carg01426
Synteny	Carg01426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCTCAATTTAGCACTAACATCTTCTCCCAAATTTGTTTTCCTCGGATATTCTTCTACTTCTTCTATATCTACTCCCACTAGAACCAATCAATTATGTGGAAGCAGGCGCTTGGCAAGGTCCAGGATTAAGTATCCTCCCAGAATTCTTGCTTCTGCTGTTAATCGTCGATCCAACCACCGTATCGTCGGTAATATTCGAATTCTCCGTTGAAAATGATGTTTGAACGTCACTTTTAATCTTCACTCCCTATTTGATTGTTCTCTGTTTTGTTTACTGTCGTGAAAAGCAGTGGCTGAACGGTTTGCAAGTGTTTCTTCTTCGACTACTAGCAATGAATCGTCTTCTGTTGGTGTTCCATCAGTATCTGTTCCTCCTCCCTCCTCATATGTGTAAATTTTCGTTGCCTTATCTTTCGTTTTTATTGTAGGTTTTGGGAATTCAGTTCTACGATTTTTTTTTTTTTTTTTAAAATCTCGTAAGACACGGATTTGATTGAATGGATATAACATGAACTAAGTTCAGTAACTTAGATTCACCTGGCAGGTTTGCTCTGTTTTTTCTTATTATTTTTATAAATCTTCACCATTATGGTTGTCATCTTTTTTAGAGGGTCGCCTCTCTTTTGGGTTGGCGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGTGAGTGAGAATGAAACCTGTATGTCTGAACTATATATTTTTCGAATGTGGATATTATTGAATTTAGCAACAATCTTTTAGGTCGAATGTTCTTTTAACAATTTGTAAAAAAAAAAAAAAAATTGCAGGTGGCTTCTTATTTAAAGGTGAGTTTTCTTCTACAAGGTATGGGATTATGATTGTGCCTTATATATGCTGTTTTTCCTGCTAGAGTCAGTCTTCCATAGCTCTCTTATTGCTTGAAGTTGCACAGATATTCTTCTGAAATGTTATTCTCTATGCTTGGGGTTCTACACGATACTAGTTTATTGTCCATGGAGTTGTTGACCATTGAAAAGTTGTATCATTCATTTATACAGAACTTTCTGCACTTTTGTTGTCGGAAAAAGGTGGTGAATAACAGAAGTTCTTTCATTAATAAATTGATCCCCACCCTCTGCACGTTTTCTTTTGTAAGCTTTAGTGATTGGTGGCCGATAAAAAGTTCAGTTTCTCTTGTAAAAGGATTTGCGTTCTAGTACATAATAATGTTTCTATGTACTCCTCCCAAAGCAGAATCTTTTCCAGTACATTTTCTTCCTTTGCCCTTCTACATTTCCATGGGTCTTTCGATCCTATAAGATTGTTCTTCCATTTTCTTCTTGCATATAAGTTACACCTTCGATCAGTACTAACCTTGACCGGTCTGTGTTTCTTTTGTTCCTATATATTTTATTGTAATTGCATTCCAGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACACCCAGATGAGTAATTCTACACAACCATTTGGATCACCTTTTGCAGTACCTCCGACATTTGCGACTGGAACGGCAGTTTCTCCATCTGTTTCTGAAACTGCTGCATCAATTGATGTAACTGCAACAAAAGTTGAAGATGAGCCAGTTACTAATGTCAAACGTGAGACAGAGAACATGGAAGCAAAGAAGTTTGGTATCTAAGGATCCTCCTCCTATTATATTATTTCAATATGTTGGTTTTTCTGAATTTATTGATTGTGATTTCATTTTTGTGCTTCCAAGTGACAACCCTCTTGACTGAAGGCTTGAACATATGGGATACAAATGTCGAGGTTTACATTTTAGTTCTGTTGATAAGCTTTACTAGGAATCATCTAGGTTTTATATCTTGGTATTGGGGTGTGAACCTTCCGTAACCTTCAGGATTAGTTGGTGAAGTGCCCTTTATGGATACCTGCATTTATTAGTGAAATTACTAGCCGTTTTGATTCAAATACTTTCATTGCCTTGTTGTCATGGATATCGGACAATATATATTTATGTATGCATGGTATATTTGTTTATTTATTAGATGCCTGTGAAGAAATTTTGAAATTCTTCCTTATCCTCTTTTTTTAGTTCAACCACACGTGAGGGTGGGGATTCGAACCTCCAACTTTTGGTTGATAACATAATACCTTAACCTATTAAGCTGTACTCAAGTTGACAAAGTTTCATTTTATCTCTCTAGGTGCAACATCCCACCACTTTGCTTAGTAGTATGCCTAGATAAATAGGTCCTCAATGTCTAGGCTTCAATTTATTTGGAACAGGCTTCGTAAGATCTGGTGAAACAGGTTATATGGCATAATTTCATTTCTTTGCACCTACCTACATACTGCACAGTACGAGTATTGTGAATATATGCTCATATATTCAAATTGTAGGTGCTCAAGCCAGTCTATGTGCTTCTCAACTAACTTTATAAGATATTAATCTAACTTTATGACATTTTGGTATCACAACTCTGAAGGATTTATAATATCTTCAATTTCTGACTTTCAAGATCGGAGGCAAATTCATGAAACTTCTTTTCACAGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAAGAAGAAGCCACAGACACCGATGTTTCAAAGAGTGCTCAGCCTTCTGTGGAAGTAAGTTTGTTCCTTTCTTTTTTTTTTTTTTTTTTTGCTATGGTGGCTAGCGTTGATATGGCAATTTACTCTGATTTATTTGTGAAGTTTCCACAGAATGGAGCTGCTTCAAAGCAGGCATTTAACGGTTCAGAGGGATCACAATTCAGCCGTAAGTTGAGAACAAGAAATGATAATATTTTCTCCGTTAATTCTATTACCACCCCCCCACCCCCCCGGTTGTATAAGACCTACTTAAATAGAAAGTAAAACAAAATATTATGGCAACTTATTGAAAAATTAAAGTTTAAGAAAATTTTGACCTACTTAAAGCCCATTATTTGATATTTCTGTCTCATAATGTTTCTTTGGTTATTTCTTCAATTTTCTTGTTTTTGTGCTACAAGGTCATTCATGATTGAATGTGTACTACTGCAGTTTAGTTATTACCAAAAAGTTCAATAACATCTTTGATATTCTCATCTACTAGGAAAACCTGGCAAAACCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAAAAGATGATATATCCGTATGCAGCTTTTACTGTTTATCTACTTCATATTTTGCTTTCCCCATATATAAGTATGTTTATCTACTTCATATTTTGCTTTCCCCATATATAAGGTTTTAATAAGGTCTATATAATTACTCTCTCATTTTCTCTAACTCAGTAAGAAACCTAACAGCTAGCCACTTCCCTGCCTGTTGATACTGATAACCATTAGTTAATCTGAAAGCATGATGTACATCAATTTACATTCCGGATGGACCAGAATCAGATTCAATAATATCCTTGAACCAACTCTTTTTTTTTTCCCCCATTAAATTTAAGTTTTTGGTCATAAGACTCTCCATTATGCGTGAATATGAAATTCTGTTTTCCACCATGTGCCGGGTGTTCAATACCTTCTTCTTTTTCTAGGTGAATATCTTTTCTGCCTTTTGGGTTCCTTTATTGTATGCCTTTTTGCATTGCATGTAACTTGTATGATCATTTCCTGAAGCAGCTGACAGCTAAATTTGATTCCTGAGTACTTCTTGTGTTGATTTCTAAAAGCTAGTGTACTTTTTTTTCCATCTTACAGCCATCTGCCCGAGGAGATGAGAAATCCAGAAACATTCAAGTGTAAGTCTTATTGATTAATGCAATCTTCAAGCAGTACGCCTTCTATAAGCAATGAGAAAGGTGGGAATAAGTCAAGATGAAGGCCCAGGGTTGTTCCCTCTGAAGATAGAAGAAGAAACCTGGGGGGGGGGGAGGTTATGCTGGAAGTAAATAAGATGAACCTGCTGAAGTTAGAAGAAGAAACCCTTGAAGGGGGGAGGTTATGCTGGGAGTAAATAAGATGAAAATCACGGATCCTAAAAGAAGAAAAAGAAAAGAAAATAGATGTGAGCCAGGGCTATTCCTGCTGAAGATGGAAGAAGAAACCCTTGAAAAGAGGGGGGGGGGGGTGTTTGGAAGAAAAAGAATGTGTGACCTAGTGGGTACTGTGAATGCAAGGAAGAAATTAACTTTACTTAGTGATTCTAGCAAGATGCAAGCTAGTTTTTCAACTCTATTTTAATCTTCTAGAATAAAAATTTGGTGGTCTTTTGGACAATACAGGATTAACTGTATTACCAACCCCAGCTTGGAAGTATAATTATTGTAGTACACATATTATAGCGATACTACTACTTAAATTCAGATGACGGATGTTTAAATTTGGAATTTCTAAACCTTTATTGTGATCTTCACAATCGAGATTAAATTTCTGGAGTTTCTGTGATTTTCTTTTGGGGCATACTTGGAGGATTGGCAACTTAGTTTTAAATTTTACTTGACCAGTTCTATATTCTAATCTTCTACATGGTATCACTTATTGATGGAAATATTTTGAATAGGGATGATGCAAAATCCATTATATCGTCAACAATTAGAAGAAATGCTGTAAGTTCTGTTTATTTATTCTTTTTTTTTTCTTTAAAGAAATAATTATTCAATTCTGTCCAAAGGCTTCTTATCTATCATGTCATAACATTCATGTCAAAAAAAATTACTGATCAATCTCTTATTTTTTTTGTGCTTTTGCTTTCTTTGCTTTCTTGTGTTTGCTCCTAAAATCTTACAGTGACTTGTGACAGCGTTGTTTTCATACTTTCTAAACTATACAGTCTTACATTTGATTTTATTGAACATTTTTTTAAGTTATCAAACTGCAGAACATGCTTGGTGATGTTGGAATCGAATGTTTATCCCATTAAGCGTTATTATTTAAATGCATAATGCAAGTGGCTAAGATCCTATTTTCCATATTAGGTTGGAATTTGAAGAGTGAGTTTGTCATGGTTTACTGAACTGTGAAAATGCGTTTTTAAGTCAATTGTACAATGTTTGAGCCACTTTTGTGAGTTGCTCCGTGTCTCTATTATCTTTTGAGTAAGAAATCGCATTTTGTGGTTTCCACTTCATTGTCCTTAGATACCTCTTTGTTTTCTTGGGCTTCCGACGACCTCTTTTTGATAGACAGGCGTTAGAGATGACAATTTTTCTTTCTTTCGTTCCTTTTTTCTTTTTTTTGTGTGATCTGATCACGTGTACCAAGAGAGAAGGGACTCTAGATTTTGGACCTCTCGACTCTTTCATGGGCTTTTCTTTTCGTTCTTTTTTCCTGTGTTGTATGTTCCTTCCCTATGCCAAGCCAACTCCATTCTTTCATCCCTCCGGGAGGTTAAAATCCCTAGGAAGGTTAATTTTAGTGTGGCTGGTTTTGTAGGGGAATGCCAATACTGTATACCATATTCAAAGACACTTTTCCTTTGTGTTGCTCCTGCAATGGTGCATCCTTCGTTGGCAGAGTTGGGGACCCGTCCCAAATGGGGTGGAGAATCCCCGTTTAAATGTGGAATGAGGATGGAGTGAGGAGAAATTTTTCTCTGTTGGCTAAACGGGGCGAGGGACGGAGATTATTTATTTGTGTGGAATACTTGGTTCCATTGGACTAGAGTCATAATATGTTTGAAGTATGTGACACAACGCTGTCTTCTAACATGATTTTTTTCCCCTGCTTTAATCATTATTCACAGTAACAATATGAGTGGAAGCCCTCAATGGGACGATCGCCTCATGGATTCTTTGAAAAACTTTGATCTTAGCAGCCCCGAAGTTAAGCAGCAATTTGGTCAGTCAAGTCGATCTCTTTGATTTTGTACATTTTGTCAACGGTTATATCTTGGGAGTTAAATGGCTTGATCACTACTCTCTAGTTGGATTTGCTCTATATATTTCATATATGTTTGAAATGTTGATACTATTTTTTATTTTCTATGACTGTTGCAATCATATATTCCCACTCTTAAAAATTATGGACCCAACATTTTGTTGTTTTTCTTTTTTGTCAAAATAATTTATAAGCTCAGAAGTCCGTAAAATTGGCTTCAGTTTTGGTTTTCTGATGCCGATGTCATTTTCTCTTTTCGCTGAAATTGATTTAAATATATTCTTTGAAATTTAGTTTAGATAAGATTCATGAATGCTTCATTTAGTATATCTACATGTTTAGGTGAGTTACTTGATTCCTGTTTAGAAATGAAATTTTGAAACAAATTTTATGTTTTTAAACTGTTTTTCTATATGGAAAACTTATTTGGCAGAAAACTCCCCTCACCTCCCACACGCACAATAATAATAATAATACTGGCTTTCTTTATTTCTGGAAACTTGACAGATCAAATTGGGATGACACCTGAAGAAGTTATTTCAAAAATGATGGCCAATCCTGAAATCGCAATGGCATTCCAAAATCCAAGAGTTCAAGCAGCCATCATGGATGTATGTTCTACTTAAGGTTTATTAGTTTTTGGTTCAAACATAACATTCCTATTTTTCTTTTTGCAGTGTTCACAAAATCCACTGAGCATAGCGAAGTATCAAAATGACAAAGAGGTACGTTAA

mRNA sequence

ATGGATAGGCTCAATTTAGCACTAACATCTTCTCCCAAATTTGTTTTCCTCGGATATTCTTCTACTTCTTCTATATCTACTCCCACTAGAACCAATCAATTATGTGGAAGCAGGCGCTTGGCAAGGTCCAGGATTAAGTATCCTCCCAGAATTCTTGCTTCTGCTGTTAATCGTCGATCCAACCACCGTATCGTCGTGGCTGAACGGTTTGCAAGTGTTTCTTCTTCGACTACTAGCAATGAATCGTCTTCTGTTGGTGTTCCATCAGTATCTGTTCCTCCTCCCTCCTCATATGTAGGGTCGCCTCTCTTTTGGGTTGGCGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGTGGCTTCTTATTTAAAGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACACCCAGATGAGTAATTCTACACAACCATTTGGATCACCTTTTGCAGTACCTCCGACATTTGCGACTGGAACGGCAGTTTCTCCATCTGTTTCTGAAACTGCTGCATCAATTGATGTAACTGCAACAAAAGTTGAAGATGAGCCAGTTACTAATGTCAAACGTGAGACAGAGAACATGGAAGCAAAGAAGTTTGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAAGAAGAAGCCACAGACACCGATGTTTCAAAGAGTGCTCAGCCTTCTGTGGAATTTCCACAGAATGGAGCTGCTTCAAAGCAGGCATTTAACGGTTCAGAGGGATCACAATTCAGCCGAAAACCTGGCAAAACCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAAAAGATGATATATCCCCATCTGCCCGAGGAGATGAGAAATCCAGAAACATTCAAGTGGATGATGCAAAATCCATTATATCGTCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCTCAATGGGACGATCGCCTCATGGATTCTTTGAAAAACTTTGATCTTAGCAGCCCCGAAGTTAAGCAGCAATTTGATCAAATTGGGATGACACCTGAAGAAGTTATTTCAAAAATGATGGCCAATCCTGAAATCGCAATGGCATTCCAAAATCCAAGAGTTCAAGCAGCCATCATGGATTGTTCACAAAATCCACTGAGCATAGCGAAGTATCAAAATGACAAAGAGGTACGTTAA

Coding sequence (CDS)

ATGGATAGGCTCAATTTAGCACTAACATCTTCTCCCAAATTTGTTTTCCTCGGATATTCTTCTACTTCTTCTATATCTACTCCCACTAGAACCAATCAATTATGTGGAAGCAGGCGCTTGGCAAGGTCCAGGATTAAGTATCCTCCCAGAATTCTTGCTTCTGCTGTTAATCGTCGATCCAACCACCGTATCGTCGTGGCTGAACGGTTTGCAAGTGTTTCTTCTTCGACTACTAGCAATGAATCGTCTTCTGTTGGTGTTCCATCAGTATCTGTTCCTCCTCCCTCCTCATATGTAGGGTCGCCTCTCTTTTGGGTTGGCGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGTGGCTTCTTATTTAAAGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACACCCAGATGAGTAATTCTACACAACCATTTGGATCACCTTTTGCAGTACCTCCGACATTTGCGACTGGAACGGCAGTTTCTCCATCTGTTTCTGAAACTGCTGCATCAATTGATGTAACTGCAACAAAAGTTGAAGATGAGCCAGTTACTAATGTCAAACGTGAGACAGAGAACATGGAAGCAAAGAAGTTTGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAAGAAGAAGCCACAGACACCGATGTTTCAAAGAGTGCTCAGCCTTCTGTGGAATTTCCACAGAATGGAGCTGCTTCAAAGCAGGCATTTAACGGTTCAGAGGGATCACAATTCAGCCGAAAACCTGGCAAAACCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAAAAGATGATATATCCCCATCTGCCCGAGGAGATGAGAAATCCAGAAACATTCAAGTGGATGATGCAAAATCCATTATATCGTCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCTCAATGGGACGATCGCCTCATGGATTCTTTGAAAAACTTTGATCTTAGCAGCCCCGAAGTTAAGCAGCAATTTGATCAAATTGGGATGACACCTGAAGAAGTTATTTCAAAAATGATGGCCAATCCTGAAATCGCAATGGCATTCCAAAATCCAAGAGTTCAAGCAGCCATCATGGATTGTTCACAAAATCCACTGAGCATAGCGAAGTATCAAAATGACAAAGAGGTACGTTAA

Protein sequence

MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRSNHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASIDVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSVEFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEVR

Homology

[Close]

BLAST of Carg01426 vs. NCBI nr
Match: KAG7016592.1 (Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 757.3 bits (1954), Expect = 6.8e-215
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEVR 403
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEVR
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEVR 402

[Close]

BLAST of Carg01426 vs. NCBI nr
Match: XP_022938458.1 (protein TIC 40, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 753.8 bits (1945), Expect = 7.5e-214
Identity = 400/401 (99.75%), Postives = 400/401 (99.75%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASA NRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAANRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 401

[Close]

BLAST of Carg01426 vs. NCBI nr
Match: XP_022938459.1 (protein TIC 40, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 741.5 bits (1913), Expect = 3.8e-210
Identity = 397/401 (99.00%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASA NRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAANRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           E   NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 E---NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 398

[Close]

BLAST of Carg01426 vs. NCBI nr
Match: KAG6579066.1 (Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 740.7 bits (1911), Expect = 6.5e-210
Identity = 397/401 (99.00%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVK ETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKSETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           E   NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 E---NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 398

[Close]

BLAST of Carg01426 vs. NCBI nr
Match: XP_023550294.1 (protein TIC 40, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 738.4 bits (1905), Expect = 3.2e-209
Identity = 393/401 (98.00%), Postives = 393/401 (98.00%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLA SRIKYPPRILASAVNRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLASSRIKYPPRILASAVNRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVS PPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSAPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNT MSNSTQPFGSPF VPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTPMSNSTQPFGSPFPVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVK ETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQP V
Sbjct: 181 DVTATKVEDEPVTNVKSETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPPV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           EFPQNGAASKQAFNGSEGSQFSRK GKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 EFPQNGAASKQAFNGSEGSQFSRKSGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSI KYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEV 401

[Close]

BLAST of Carg01426 vs. ExPASy Swiss-Prot
Match: Q8GT66 (Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.6e-102
Identity = 235/422 (55.69%), Postives = 283/422 (67.06%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILA-SAVNRR 60
           M+ LNLAL SSPK + LG+SS+ ++ +  ++      R  A S   +  R  + S  N +
Sbjct: 1   MENLNLALVSSPKPLLLGHSSSKNVFSGRKSFTFGTFRVSANSSSSHVTRAASKSHQNLK 60

Query: 61  SNHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWV 120
           S    V A  FAS+SSS    E++SVGV     PPP S VGSPLFW+G+GVG SALF+ V
Sbjct: 61  SVQGKVNAHDFASISSS-NGQETTSVGVSPQLSPPPPSTVGSPLFWIGIGVGFSALFSVV 120

Query: 121 ASYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAV---------- 180
           AS +KKYAMQQAFK+MM QMN+QN    +     G PF  P   A+G A           
Sbjct: 121 ASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQ 180

Query: 181 ---SPSVSETAASIDVTATKVE---DEPVTNVKRETE-NMEAKKFAFVDVSPEETDQKSP 240
              + S S++  ++D+ ATKVE     P  NVK E E   E KK AFVDVSPEET QK+ 
Sbjct: 181 ATSTRSASQSTVTVDIPATKVEAAAPAPDINVKEEVEVKNEPKKSAFVDVSPEETVQKNA 240

Query: 241 FKEEATDTDVS---KSAQPSVEFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMME 300
           F E   D D S   K A+   E  QNG   KQ F  S  S   RK    LSV+A+EKMME
Sbjct: 241 F-ERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERK--SALSVDALEKMME 300

Query: 301 DPTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFD 360
           DPTVQ+M+YP+LPEEMRNP TFKWMMQNP YRQQLE MLNNM G  +WD R+MD+LKNFD
Sbjct: 301 DPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFD 360

Query: 361 LSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDK 402
           L+SP+VKQQFDQIG++P+EVISK+MANP++AMAFQNPRVQAAIMDCSQNP+SI KYQNDK
Sbjct: 361 LNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDK 418

[Close]

BLAST of Carg01426 vs. ExPASy Swiss-Prot
Match: Q9FMD5 (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.3e-99
Identity = 224/421 (53.21%), Postives = 288/421 (68.41%), Query Frame = 0


Query: 10  SSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRSNHRIVVAER 69
           SSPK + +G + TSS+  PT  ++   +  L  S+I    +  + +    +   IVV ++
Sbjct: 12  SSPK-LLIGCNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRPENTGEIVVVKQ 71

Query: 70  ----FASVSSSTTSNESSSVGVPSVSVPPP-SSYVGSPLFWVGVGVGLSALFTWVASYLK 129
               FAS+ SS+   +++SV  PSV VPPP SS +GSPLFW+GVGVGLSALF++V S LK
Sbjct: 72  RSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLSALFSYVTSNLK 131

Query: 130 KYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSE---TAASID 189
           KYAMQ A KTMM+QMN+QN+Q +NS  P GSPF  P    T  A SP  S+   + A++D
Sbjct: 132 KYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVD 191

Query: 190 VTATKVE-----------------DEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFK 249
           VTATKVE                 D+P   ++   E  E K +AF D+SPEET ++SPF 
Sbjct: 192 VTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFS 251

Query: 250 E--EATDTDVSKSAQPSVEFPQNGAASKQAFNGSEGSQF--SRKPGKTLSVEAVEKMMED 309
              E ++T+  K  +   +  QNGA        SE  Q     K G  LSVEA+EKMMED
Sbjct: 252 NYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMED 311

Query: 310 PTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDL 369
           PTVQKM+YP+LPEEMRNPETFKWM++NP YRQQL++MLNNMSGS +WD R+ D+LKNFDL
Sbjct: 312 PTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDL 371

Query: 370 SSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE 402
           +SPEVKQQF+QIG+TPEEVISK+M NP++AMAFQNPRVQAA+M+CS+NP++I KYQNDKE
Sbjct: 372 NSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE 431

[Close]

BLAST of Carg01426 vs. ExPASy TrEMBL
Match: A0A6J1FIY5 (protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444690 PE=4 SV=1)

HSP 1 Score: 753.8 bits (1945), Expect = 3.6e-214
Identity = 400/401 (99.75%), Postives = 400/401 (99.75%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASA NRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAANRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 401

[Close]

BLAST of Carg01426 vs. ExPASy TrEMBL
Match: A0A6J1FE53 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444690 PE=4 SV=1)

HSP 1 Score: 741.5 bits (1913), Expect = 1.9e-210
Identity = 397/401 (99.00%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASA NRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAANRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV
Sbjct: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           E   NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 E---NGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 398

[Close]

BLAST of Carg01426 vs. ExPASy TrEMBL
Match: A0A6J1K0V5 (protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 738.4 bits (1905), Expect = 1.6e-209
Identity = 394/401 (98.25%), Postives = 394/401 (98.25%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNT MSNSTQPFGSPF VPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTPMSNSTQPFGSPFPVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVK ETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQ  V
Sbjct: 181 DVTATKVEDEPVTNVKSETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQLPV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           EFPQNGAASKQAFNGSEGSQFSRK GKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 EFPQNGAASKQAFNGSEGSQFSRKSGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSI KYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEV 401

[Close]

BLAST of Carg01426 vs. ExPASy TrEMBL
Match: A0A6J1JYZ5 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 726.1 bits (1873), Expect = 8.1e-206
Identity = 391/401 (97.51%), Postives = 391/401 (97.51%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQNT MSNSTQPFGSPF VPPTFATGTAVSPSVSETAASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNTPMSNSTQPFGSPFPVPPTFATGTAVSPSVSETAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVEDEPVTNVK ETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQ  V
Sbjct: 181 DVTATKVEDEPVTNVKSETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQLPV 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           E   NGAASKQAFNGSEGSQFSRK GKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 E---NGAASKQAFNGSEGSQFSRKSGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSI KYQNDKEV
Sbjct: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEV 398

[Close]

BLAST of Carg01426 vs. ExPASy TrEMBL
Match: A0A1S3CIG9 (protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 1.4e-189
Identity = 356/401 (88.78%), Postives = 375/401 (93.52%), Query Frame = 0


Query: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60
           MDRLNLALTS PKF+FL YSS SSISTP+RTNQLC +RRL+ SRIK PPRILASA+NRR 
Sbjct: 1   MDRLNLALTSPPKFLFLTYSSASSISTPSRTNQLCATRRLSSSRIKSPPRILASALNRRP 60

Query: 61  NHRIVVAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSALFTWVA 120
           NHRI+VAERFA+VSSSTTSN+SSSVGVPSVS+PPPSSYVGSPLFWVGVGVGLSALFTWVA
Sbjct: 61  NHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVGLSALFTWVA 120

Query: 121 SYLKKYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSETAASI 180
           SYLKKYAMQQAFKTMMSQMNSQN+ MSN     GSPF +PPTFATGT V+PSVSE AASI
Sbjct: 121 SYLKKYAMQQAFKTMMSQMNSQNSPMSNPKLSSGSPFPIPPTFATGTTVTPSVSEPAASI 180

Query: 181 DVTATKVEDEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFKEEATDTDVSKSAQPSV 240
           DVTATKVE+EPVTNVK  TENMEAKKFAFVDVSPEETDQKSPFKE+ATD DVSKSAQP+ 
Sbjct: 181 DVTATKVEEEPVTNVKTGTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTE 240

Query: 241 EFPQNGAASKQAFNGSEGSQFSRKPGKTLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300
           E PQNGAASKQA+ GS+GSQFSRKPG  LSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET
Sbjct: 241 ELPQNGAASKQAYIGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 300

Query: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVI 360
           FKWMMQNPLYRQQLEEMLNNMSGSPQWD RLMDSLKNFDLSSPEVKQQFDQIG+TPEEVI
Sbjct: 301 FKWMMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVI 360

Query: 361 SKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKEV 402
           SK+MANPEIAMAFQNPRVQAAIMDCSQNPLSI KYQNDKEV
Sbjct: 361 SKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEV 401

[Close]

BLAST of Carg01426 vs. TAIR 10
Match: AT5G16620.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 364.8 bits (935), Expect = 9.1e-101
Identity = 224/421 (53.21%), Postives = 288/421 (68.41%), Query Frame = 0


Query: 10  SSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRSNHRIVVAER 69
           SSPK + +G + TSS+  PT  ++   +  L  S+I    +  + +    +   IVV ++
Sbjct: 12  SSPK-LLIGCNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRPENTGEIVVVKQ 71

Query: 70  ----FASVSSSTTSNESSSVGVPSVSVPPP-SSYVGSPLFWVGVGVGLSALFTWVASYLK 129
               FAS+ SS+   +++SV  PSV VPPP SS +GSPLFW+GVGVGLSALF++V S LK
Sbjct: 72  RSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLSALFSYVTSNLK 131

Query: 130 KYAMQQAFKTMMSQMNSQNTQMSNSTQPFGSPFAVPPTFATGTAVSPSVSE---TAASID 189
           KYAMQ A KTMM+QMN+QN+Q +NS  P GSPF  P    T  A SP  S+   + A++D
Sbjct: 132 KYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVD 191

Query: 190 VTATKVE-----------------DEPVTNVKRETENMEAKKFAFVDVSPEETDQKSPFK 249
           VTATKVE                 D+P   ++   E  E K +AF D+SPEET ++SPF 
Sbjct: 192 VTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFS 251

Query: 250 E--EATDTDVSKSAQPSVEFPQNGAASKQAFNGSEGSQF--SRKPGKTLSVEAVEKMMED 309
              E ++T+  K  +   +  QNGA        SE  Q     K G  LSVEA+EKMMED
Sbjct: 252 NYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMED 311

Query: 310 PTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWDDRLMDSLKNFDL 369
           PTVQKM+YP+LPEEMRNPETFKWM++NP YRQQL++MLNNMSGS +WD R+ D+LKNFDL
Sbjct: 312 PTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDL 371

Query: 370 SSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE 402
           +SPEVKQQF+QIG+TPEEVISK+M NP++AMAFQNPRVQAA+M+CS+NP++I KYQNDKE
Sbjct: 372 NSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE 431

The following BLAST results are available for this feature:

BLAST of Carg01426 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016592.1	6.8e-215	100.00	Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022938458.1	7.5e-214	99.75	protein TIC 40, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_022938459.1	3.8e-210	99.00	protein TIC 40, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
KAG6579066.1	6.5e-210	99.00	Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023550294.1	3.2e-209	98.00	protein TIC 40, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg01426 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GT66	1.6e-102	55.69	Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1	[more]
Q9FMD5	1.3e-99	53.21	Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1	[more]

BLAST of Carg01426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIY5	3.6e-214	99.75	protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FE53	1.9e-210	99.00	protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K0V5	1.6e-209	98.25	protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JYZ5	8.1e-206	97.51	protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3CIG9	1.4e-189	88.78	protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349...	[more]

BLAST of Carg01426 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16620.1	9.1e-101	53.21	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 356..395 e-value: 0.0014 score: 27.9 coord: 280..314 e-value: 0.021 score: 24.0
IPR041243	STI1 domain	PFAM	PF17830	STI1	coord: 357..401 e-value: 1.5E-8 score: 34.4
None	No IPR available	GENE3D	1.10.260.100		coord: 356..402 e-value: 1.7E-16 score: 61.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..231
None	No IPR available	PANTHER	PTHR47296	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..401
None	No IPR available	PANTHER	PTHR47296:SF1	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..401

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01426-RA	Carg01426-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane