Carg01394 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01394
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Location	Carg_Chr15: 4296487 .. 4298846 (+)
RNA-Seq Expression	Carg01394
Synteny	Carg01394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCTTTTATCCTTTTCGTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCTTCATCAAACTCACTTCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTCAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCAAAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTTGATAAATTCACCTCCGGTGCAATTCGAATTACATCGTTCTGTTATTTCTCTGTTTATGTTGTGTATTGATTGAATCGCGTCGATTAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACAGACAGAGGCGAAACGATTACGTAATGCGATTTTCTTTTGGAATTGGTTACAATTTTGTGATTCATTTTTTTGTGAGTGTTAAGTTCAATTGCATTGAATTAACTTCTGGATGTTCGATTGATGTTTAATTGTGAAGGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCGTAAGTGCCACTGAACCTCTCGCCTATATATTAACACCGACTCATGGCATGCATGCTTGTTTGATAGTCATTTTGAAATTACTAGAATCTTGATCATTCAAAACCAATGTTTCAAGAAGTTTGAATGATTAATGACATATTTGAGATCGATTTTACAAAAGCCATTTTAATCCTTTCAAACCCGTCCCCCTTTGAATCATGATCTCCTTCATTACCCAATCCAAAACTTGAATATTCTACGAAAAAATATCCTATATTCATTGAGATTTTCTTAGATCTTTGATTTTAATTTAGCCTTCATACCTTTAGAAAAGAAAAAACTTATGGTGTCATTGAAGTTTGGATCAAAATTTTCTGAGATCTTTGATTTTAGTTTAGGCTTCATACCTTCCGAAAATCATATGATCTTTTAAGCTTCCAAATTTTGTTGTTCGTTCTCAATTACCAATTATGGTTTTCATCTCCTACACAAATCCAAAAGTAAATTTTTTAAAATATTTTTTTAATTTTCAAAATATGACTTAGTAAATTGCTACGACCCTATTTCATCGATCGTGTTACCCCTTCTCTTTAATCTAATAGATGCATATATAATTGAACTCAATAATATACAAGTAAGAAATTCAGTCTATCATAAACATGCATAAATTCACGAAATTTTAATTAACCTTTTATAAAATAATATCATAAACCGGTCTCTCAAATTCAAATTCAAATTCTATCTATGATCTTAAAATTTGAGATATATGATAGAACCTTAGAATCTAACCTGAGGCTGTTTGAAAACTGCAGAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTCATCTTCTTCTTCTTCTTTTTTTTTTTTCTTTTTTTTTTCTTCTTTACCATAGTTGTAGGAATCTTCATGAGTTACATTCAATCAGTCCAGATTCTGGAAAAGAATTGAAACTTGTACAACAATTTTCCAACACATGAATCATAGCATCAAAATTCAATATGGCCACATGGATCTTCTAATCTCTCTCTCTTTCACTCATTCAGTCAAATTATTTTAGATTCATTCATGAGCCAAGTAGTGTTACAGTATTCTCACTGCAATAAAGATTTCTAAAATGAAACAAAACATGTCTGCAGCTTATATCTGCTTTTGATATAACTTGAGGGTTTCGAACCTCTTATGTTACGTCGAAAATAAGAGATCGGTTTCTTAACCGATCAAAAGCTTGTTTTCATCCAAGAAGGTGTAGGTAGGTACCTCCAAATTGTATGGTGCTGGTCCTTTACGGATCCTACCAGAGATATCGTAATG

mRNA sequence

CAAAGCTTTTATCCTTTTCGTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCTTCATCAAACTCACTTCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTCAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCAAAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACAGACAGAGGCGAAACGATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTCATCTTCTTCTTCTTCTTTTTTTTTTTTCTTTTTTTTTTCTTCTTTACCATAGTTGTAGGAATCTTCATGAGTTACATTCAATCAGTCCAGATTCTGGAAAAGAATTGAAACTTGTACAACAATTTTCCAACACATGAATCATAGCATCAAAATTCAATATGGCCACATGGATCTTCTAATCTCTCTCTCTTTCACTCATTCAGTCAAATTATTTTAGATTCATTCATGAGCCAAGTAGTGTTACAGTATTCTCACTGCAATAAAGATTTCTAAAATGAAACAAAACATGTCTGCAGCTTATATCTGCTTTTGATATAACTTGAGGGTTTCGAACCTCTTATGTTACGTCGAAAATAAGAGATCGGTTTCTTAACCGATCAAAAGCTTGTTTTCATCCAAGAAGGTGTAGGTAGGTACCTCCAAATTGTATGGTGCTGGTCCTTTACGGATCCTACCAGAGATATCGTAATG

Coding sequence (CDS)

ATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTCAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCAAAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACAGACAGAGGCGAAACGATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGA

Protein sequence

MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQDHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ

Homology

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BLAST of Carg01394 vs. NCBI nr
Match: KAG7016624.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 511.1 bits (1315), Expect = 5.4e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata] >KAG6579098.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 509.2 bits (1310), Expect = 2.1e-140
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DH NSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 502.7 bits (1293), Expect = 1.9e-138
Identity = 255/259 (98.46%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MA K LPSHLYPLPSPSLPPSSFSAGDLTPRPCFG PRTHFRPQRSVAVRVNVEPLVAFQ
Sbjct: 1   MAAKILPSHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DH NSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 4.0e-136
Identity = 251/259 (96.91%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPL SPSLPPSSFSAGDLTPRPCFG PRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D  NS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. NCBI nr
Match: XP_038874658.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa hispida])

HSP 1 Score: 456.1 bits (1172), Expect = 2.1e-124
Identity = 237/260 (91.15%), Postives = 239/260 (91.92%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LP SHL PLPS     +SFSA DLTPRPCFGRPRTHF+P RSV VRVN EPLV  
Sbjct: 1   MAAKLLPSSHLCPLPS-----NSFSAVDLTPRPCFGRPRTHFKPHRSVTVRVNAEPLVVL 60

Query: 61  QDHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QDH NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKT VSEGESKK
Sbjct: 61  QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTLVSEGESKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Carg01394 vs. ExPASy Swiss-Prot
Match: Q9LSE4 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-81
Identity = 166/230 (72.17%), Postives = 182/230 (79.13%), Query Frame = 0


Query: 42  RPQRSVAVRVNVEPL-----VAFQDHQ------NSAFLLAESV-GYSTASYYTSLGLFVI 101
           R + S    + VEPL      A Q HQ      NS  L+ E+  GYS ASYYTSLGLFVI
Sbjct: 37  RNRVSAVTAMIVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVI 96

Query: 102 SVPGLWSLIKRSVKSKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFE 161
           SVPGLWSLIKRSVKSK+V+KTFV   + KK P Q AGEILSFFTR NF +TDRGETITFE
Sbjct: 97  SVPGLWSLIKRSVKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFE 156

Query: 162 GTMVPSRGQAALLTFCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRK 221
           G MVPSRGQAALLTFCTCISLASVGLVLTIT PD GNNWF++  LSPLAG YYW KASRK
Sbjct: 157 GKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRK 216

Query: 222 EEIKVKMIVGEDGSLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           EEIKVKM+VG  G L EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 217 EEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

[Close]

BLAST of Carg01394 vs. ExPASy TrEMBL
Match: A0A6J1FEF5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444976 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.0e-140
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DH NSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. ExPASy TrEMBL
Match: A0A6J1JUD8 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488985 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.9e-136
Identity = 251/259 (96.91%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPL SPSLPPSSFSAGDLTPRPCFG PRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D  NS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Carg01394 vs. ExPASy TrEMBL
Match: A0A0A0KRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.8e-121
Identity = 229/260 (88.08%), Postives = 238/260 (91.54%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LP SHLYPLPS     +SFSA DL+PRPCF RPRTHF+P RSV VRV+ EPLVA 
Sbjct: 1   MAAKLLPSSHLYPLPS-----NSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVAL 60

Query: 61  QDHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QDH NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK
Sbjct: 61  QDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           T+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QM
Sbjct: 181 TYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Carg01394 vs. ExPASy TrEMBL
Match: A0A5A7VG78 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00110 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.3e-120
Identity = 227/260 (87.31%), Postives = 236/260 (90.77%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LP SH YPLPS     +SFSA DL+PRPCF RPRTHF+P RSV V+VN EPL+A 
Sbjct: 1   MAAKLLPSSHFYPLPS-----NSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 61  QDHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           Q+H NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Carg01394 vs. ExPASy TrEMBL
Match: A0A1S3CPE0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.4e-120
Identity = 227/260 (87.31%), Postives = 236/260 (90.77%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LP SH YPLPS     +SFSA DL+PRPCF RPRTHF+P RSV V+VN EPL+A 
Sbjct: 1   MAAKLLPSSHFYPLPS-----NSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 61  QDHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           Q+H NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Carg01394 vs. TAIR 10
Match: AT3G26710.1 (cofactor assembly of complex C )

HSP 1 Score: 303.5 bits (776), Expect = 1.6e-82
Identity = 166/230 (72.17%), Postives = 182/230 (79.13%), Query Frame = 0


Query: 42  RPQRSVAVRVNVEPL-----VAFQDHQ------NSAFLLAESV-GYSTASYYTSLGLFVI 101
           R + S    + VEPL      A Q HQ      NS  L+ E+  GYS ASYYTSLGLFVI
Sbjct: 37  RNRVSAVTAMIVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVI 96

Query: 102 SVPGLWSLIKRSVKSKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFE 161
           SVPGLWSLIKRSVKSK+V+KTFV   + KK P Q AGEILSFFTR NF +TDRGETITFE
Sbjct: 97  SVPGLWSLIKRSVKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFE 156

Query: 162 GTMVPSRGQAALLTFCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRK 221
           G MVPSRGQAALLTFCTCISLASVGLVLTIT PD GNNWF++  LSPLAG YYW KASRK
Sbjct: 157 GKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRK 216

Query: 222 EEIKVKMIVGEDGSLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           EEIKVKM+VG  G L EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 217 EEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of Carg01394 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016624.1	5.4e-141	100.00	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022938901.1	2.1e-140	99.61	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_023550037.1	1.9e-138	98.46	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022992736.1	4.0e-136	96.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_038874658.1	2.1e-124	91.15	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa ...	[more]

BLAST of Carg01394 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSE4	2.3e-81	72.17	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of Carg01394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEF5	1.0e-140	99.61	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A6J1JUD8	1.9e-136	96.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A0A0KRU8	1.8e-121	88.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1	[more]
A0A5A7VG78	3.3e-120	87.31	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPE0	4.4e-120	87.31	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]

BLAST of Carg01394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26710.1	1.6e-82	72.17	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 79..245 e-value: 3.4E-55 score: 186.0
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 41..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01394-RA	Carg01394-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane