Carg01360 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01360
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 4506951 .. 4508007 (-)
RNA-Seq ExpressionCarg01360
SyntenyCarg01360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGACTTGAGTCGGCTCTAGCGAGTGGCGCCTGCAGAACGGGTCACCAGTCATTGCAGGGGTAGCAAGTCATCAATGCAGCTATTAAATAAGACGCCGGTGGAAGTTGTCGTCACGTGCAGGTGTCGCCGGAAGGATCGATGCTCTGATCAAAATTGGTGGAAGCTTGAAGGAGAAGAAGCCAAAGGAGTGACTGACCAAACTACCCATTTGCCTTCAATGATTATCTATGATAAGCGTGTTATTTCCATTATAAAATTTTTTAATTCACCACTTACTTTTAATATACAATTTAAAAATTTTACCTTTTAAAATAATATTTTTTTTAAGAGTAGTGGCCGAATAAATAATAATAAAATAATTATAAAATTAAACAAAAATAGAATAAATATGTATATGTATATATATATACATATATATAAAATGGTAGGGTAAACAAATTCGGACTAAACTGTAAATGGTAAATTTGAATGACTAGATTGTAAATTAAATCGAGCACTTATATCTTGTCTGAGAGTATATATTTTATCTAGTTGAGTTATGTTCGGGTTGACCCTAAATTTGAACAACTAAATTTATAAATTGAATCGAGCATTTAAACCTCTAATTTCGTGTCCGAGAGTATTTTTATCTAGTTGAGTTATGTTGGAGTTGACCATAAATCTAAACGACTAAACTGATAACTTGAATGGAGCATTTAATCCTCTAATCATTGGTCTGAAAAAGTTACGTTCGAATGGACCTTAAATTTAAACAACTAAACTCGAGTTAATCTTGTGAGTAATTTTTTTTTTTTTTTACGAATTTACCCATAAATATTTAAATATTATTCAAATCCCAATTTTGATTAACTTCAATGTCAGACTTGTTGATCTGCAGTTGTATTTTCACAAAGGCAACAAGAAAGTAACTCAGCCTTTGGAGCTTTGGCTTCACGTGTTCATCTTTATGGCTCGCAATCATTCACTTCTCAACAGTAAATCAAGCTATCGTGCGCCAATCGAGGCCAGAATCAATGATGCATCCTTGATCGGTTCCTTTGAGCCTGGCTGA

mRNA sequence

ATGTTCAGACTTGAGTCGGCTCTAGCGAGTGGCGCCTGCAGAACGGGTGTCGCCGGAAGGATCGATGCTCTGATCAAAATTGGTGGAAGCTTGAAGGAGAAGAAGCCAAAGGAACTTGTTGATCTGCAGTTGTATTTTCACAAAGGCAACAAGAAAGTAACTCAGCCTTTGGAGCTTTGGCTTCACGTGTTCATCTTTATGGCTCGCAATCATTCACTTCTCAACAGTAAATCAAGCTATCGTGCGCCAATCGAGGCCAGAATCAATGATGCATCCTTGATCGGTTCCTTTGAGCCTGGCTGA

Coding sequence (CDS)

ATGTTCAGACTTGAGTCGGCTCTAGCGAGTGGCGCCTGCAGAACGGGTGTCGCCGGAAGGATCGATGCTCTGATCAAAATTGGTGGAAGCTTGAAGGAGAAGAAGCCAAAGGAACTTGTTGATCTGCAGTTGTATTTTCACAAAGGCAACAAGAAAGTAACTCAGCCTTTGGAGCTTTGGCTTCACGTGTTCATCTTTATGGCTCGCAATCATTCACTTCTCAACAGTAAATCAAGCTATCGTGCGCCAATCGAGGCCAGAATCAATGATGCATCCTTGATCGGTTCCTTTGAGCCTGGCTGA

Protein sequence

MFRLESALASGACRTGVAGRIDALIKIGGSLKEKKPKELVDLQLYFHKGNKKVTQPLELWLHVFIFMARNHSLLNSKSSYRAPIEARINDASLIGSFEPG
Homology
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BLAST of Carg01360 vs. NCBI nr
Match: KAG7016658.1 (hypothetical protein SDJN02_21768, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MFRLESALASGACRTGVAGRIDALIKIGGSLKEKKPKELVDLQLYFHKGNKKVTQPLELW 60
           MFRLESALASGACRTGVAGRIDALIKIGGSLKEKKPKELVDLQLYFHKGNKKVTQPLELW
Sbjct: 1   MFRLESALASGACRTGVAGRIDALIKIGGSLKEKKPKELVDLQLYFHKGNKKVTQPLELW 60

Query: 61  LHVFIFMARNHSLLNSKSSYRAPIEARINDASLIGSFEPG 101
           LHVFIFMARNHSLLNSKSSYRAPIEARINDASLIGSFEPG
Sbjct: 61  LHVFIFMARNHSLLNSKSSYRAPIEARINDASLIGSFEPG 100

The following BLAST results are available for this feature:
BLAST of Carg01360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016658.11.4e-47100.00hypothetical protein SDJN02_21768, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01360-RACarg01360-RAmRNA