Carg01355 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01355
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	dehydrogenase/reductase SDR family member on chromosome X-like
Location	Carg_Chr15: 4541582 .. 4542627 (+)
RNA-Seq Expression	Carg01355
Synteny	Carg01355

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTTGTGAAAGCAGCAACAACAATAATAATGGCTTCATTGTGTTATACAGTTTTTGATGTTCGGGTTGACGAGGATACCGTATGTGGAAAGCGCTTCGTGGGATTGGATCAATATCCATGTGCTAGTATCTATGAGTATTCTAAATGTGAGCAATTAATGTTTTGAGAAACAATTTATGATACTATTCTCGATTCTGACAAGCGCTATCCATTTTCTGTTACAGTATGCTTACTGCTGTTCTCCTATGAGCTTCACCGGAAACTTTCCCTAGAGAACGGATCTAATAAAGTAACAGTTGTGTAAGGGAACTTTGTCGTCGTTGCCTTTGGTTATCCTTGTTTCGTACTAAACTAGGCTTCAAGGCTTCTGATATGGATCTGCTGATTTTTGTTTGTTAAATATGATCTCTTTCATATTCTGAAGTGTTGCGGATCCTGGAGTAGTCAAAACAAACATCATGAGAGAAGTTCCTACATATCTTTCTAGGGTAGCATTTACAATATTGAGGCTTTTGAGGCTTCTACAGCTACCTGAAGATGGGGTCAACTCCATTTTGGATGCAGCCTTTGCATTACCTGTGAGAATTTTTTGCGCTTGTCTGTGTGTGTGTTTCATAGTTCTATTAAGATCTTCAATTGAGTAGACTGCACTTTCTTATGTCAGGACACATCTGGTGTTTACTTTTTCGGTGGAAACGGTAGGACGGTCAAGTCCTCTGCTCGGTCGTACGACACAAAACTTGCCAAGGAGCTTTGGGCGACGTCGTCTAATCTGTTCTTGAAATCCCAGATTGCTATTGAGGGAGTAACTAGTTATTGATTCTGACCATTGGAGTATGTCAGTTCAAATAGCTTCATGTTTAGCTCATTGTCAAAATTTATGAACTTGTAATGCAACCTACTACTCGAGGTCGAGGTCGAGGTCATTTTTTTAAGTTCGTTTAGGTGATGGAACTTAGTATTAAGATAGGTAATAAGTGTTTTATCTATTGAATTATGCTTATATTAGTGTAATCCATAATTAATTAATGTTTAATTTTG

mRNA sequence

ATGTGTCTTGTGAAAGCAGCAACAACAATAATAATGGCTTCATTGTGTTATACAGTTTTTGATGTTCGGGTTGACGAGGATACCGTATGTGGAAAGCGCTTCGTGGGATTGGATCAATATCCATGTGCTAGTATCTATGAGTATTCTAAATTATGCTTACTGCTGTTCTCCTATGAGCTTCACCGGAAACTTTCCCTAGAGAACGGATCTAATAAAGTAACAGTTGTTGTTGCGGATCCTGGAGTAGTCAAAACAAACATCATGAGAGAAGTTCCTACATATCTTTCTAGGGTAGCATTTACAATATTGAGGCTTTTGAGGCTTCTACAGCTACCTGAAGATGGGGTCAACTCCATTTTGGATGCAGCCTTTGCATTACCTGACACATCTGGTGTTTACTTTTTCGGTGGAAACGGTAGGACGGTCAAGTCCTCTGCTCGGTCGTACGACACAAAACTTGCCAAGGAGCTTTGGGCGACGTCGTCTAATCTGTTCTTGAAATCCCAGATTGCTATTGAGGGAGTAACTAGTTATTGATTCTGACCATTGGAGTATGTCAGTTCAAATAGCTTCATGTTTAGCTCATTGTCAAAATTTATGAACTTGTAATGCAACCTACTACTCGAGGTCGAGGTCGAGGTCATTTTTTTAAGTTCGTTTAGGTGATGGAACTTAGTATTAAGATAGGTAATAAGTGTTTTATCTATTGAATTATGCTTATATTAGTGTAATCCATAATTAATTAATGTTTAATTTTG

Coding sequence (CDS)

ATGTGTCTTGTGAAAGCAGCAACAACAATAATAATGGCTTCATTGTGTTATACAGTTTTTGATGTTCGGGTTGACGAGGATACCGTATGTGGAAAGCGCTTCGTGGGATTGGATCAATATCCATGTGCTAGTATCTATGAGTATTCTAAATTATGCTTACTGCTGTTCTCCTATGAGCTTCACCGGAAACTTTCCCTAGAGAACGGATCTAATAAAGTAACAGTTGTTGTTGCGGATCCTGGAGTAGTCAAAACAAACATCATGAGAGAAGTTCCTACATATCTTTCTAGGGTAGCATTTACAATATTGAGGCTTTTGAGGCTTCTACAGCTACCTGAAGATGGGGTCAACTCCATTTTGGATGCAGCCTTTGCATTACCTGACACATCTGGTGTTTACTTTTTCGGTGGAAACGGTAGGACGGTCAAGTCCTCTGCTCGGTCGTACGACACAAAACTTGCCAAGGAGCTTTGGGCGACGTCGTCTAATCTGTTCTTGAAATCCCAGATTGCTATTGAGGGAGTAACTAGTTATTGA

Protein sequence

MCLVKAATTIIMASLCYTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY

Homology

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BLAST of Carg01355 vs. NCBI nr
Match: KAG7016663.1 (Dehydrogenase/reductase SDR family member on chromosome X, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MCLVKAATTIIMASLCYTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYEL 60
           MCLVKAATTIIMASLCYTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYEL
Sbjct: 1   MCLVKAATTIIMASLCYTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYEL 60

Query: 61  HRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSIL 120
           HRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSIL
Sbjct: 61  HRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSIL 120

Query: 121 DAAFALPDTSGVYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 179
           DAAFALPDTSGVYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY
Sbjct: 121 DAAFALPDTSGVYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 178

[Close]

BLAST of Carg01355 vs. NCBI nr
Match: KAG6579145.1 (Dehydrogenase/reductase SDR family member on chromosome X, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.5 bits (815), Expect = 3.5e-83
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 12  MASLCYTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSN 71
           ++S  + VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSN
Sbjct: 245 VSSFTHRVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSN 304

Query: 72  KVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSG 131
           KVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSG
Sbjct: 305 KVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSG 364

Query: 132 VYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 179
           VYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY
Sbjct: 365 VYFFGGNGRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 411

[Close]

BLAST of Carg01355 vs. NCBI nr
Match: XP_023551555.1 (dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA
Sbjct: 219 VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 179
           GRTVKSSA+SYDTKLAKELWATSSNLFLKSQIAIEGVTSY
Sbjct: 339 GRTVKSSAQSYDTKLAKELWATSSNLFLKSQIAIEGVTSY 378

[Close]

BLAST of Carg01355 vs. NCBI nr
Match: XP_022993465.1 (dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita maxima])

HSP 1 Score: 298.5 bits (763), Expect = 3.8e-77
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDT+CGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA
Sbjct: 219 VFDVQVDEDTICGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFT+LRLLRLLQLPEDGVNSILDAAFALP+TSGVYFFGG+
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTVLRLLRLLQLPEDGVNSILDAAFALPETSGVYFFGGD 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVT 177
           GRTVKSSA SYDTKLAKELWA SSNLFLKSQIAIEG T
Sbjct: 339 GRTVKSSAWSYDTKLAKELWAMSSNLFLKSQIAIEGGT 376

[Close]

BLAST of Carg01355 vs. NCBI nr
Match: XP_022939811.1 (dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita moschata])

HSP 1 Score: 295.4 bits (755), Expect = 3.2e-76
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLEN SNKVTVVVA
Sbjct: 219 VFDVQVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENRSNKVTVVVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFAL +TSGVYFFGG+
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALSETSGVYFFGGD 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTS 178
            RTVKSSARSYDTKLAKELWATS NLFLKSQIAIEG TS
Sbjct: 339 SRTVKSSARSYDTKLAKELWATSFNLFLKSQIAIEGGTS 377

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BLAST of Carg01355 vs. ExPASy Swiss-Prot
Match: Q8N5I4 (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens OX=9606 GN=DHRSX PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 6   AATTIIMASLCYTVFDVRVD--EDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRK 65
           +A  + ++S  + V ++ +D  + + C         Y   + Y  SKL L+LF+Y L R 
Sbjct: 175 SARVVTVSSATHYVAELNMDDLQSSAC---------YSPHAAYAQSKLALVLFTYHLQRL 234

Query: 66  LSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAA 125
           L+ E   + VT  V DPGVV T++ + V  + +R+A  +L  L L + P++G  + + AA
Sbjct: 235 LAAE--GSHVTANVVDPGVVNTDVYKHV-FWATRLAKKLLGWL-LFKTPDEGAWTSIYAA 294

Query: 126 FA--LPDTSGVYFFGGNGRTVKSSARSYDTKLAKELWATSSNL 165
               L    G Y +  N +  KS   +Y+ KL ++LW+ S  +
Sbjct: 295 VTPELEGVGGHYLY--NEKETKSLHVTYNQKLQQQLWSKSCEM 322

[Close]

BLAST of Carg01355 vs. ExPASy Swiss-Prot
Match: Q8NBN7 (Retinol dehydrogenase 13 OS=Homo sapiens OX=9606 GN=RDH13 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 39  QYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYLSRV 98
           +Y   + Y  SKL ++LF+ EL R+L      + VTV    PGV +T + R    + S  
Sbjct: 193 KYNTKAAYCQSKLAIVLFTKELSRRLQ----GSGVTVNALHPGVARTELGRHTGIHGSTF 252

Query: 99  AFTILRLL--RLLQLPEDGV--NSILDAAFALPDTSGVYFFGGNGRTVKSSARSYDTKLA 158
           + T L  +   L++ PE     ++ L  A  L D SG YF G   +     A   D ++A
Sbjct: 253 SSTTLGPIFWLLVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAE--DEEVA 312

Query: 159 KELWATSSNL 165
           + LWA S+ L
Sbjct: 313 RRLWAESARL 316

[Close]

BLAST of Carg01355 vs. ExPASy Swiss-Prot
Match: Q8VBZ0 (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus OX=10090 GN=Dhrsx PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 44/135 (32.59%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 36  GLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVKTNIMREVPTYL 95
           G   Y   + Y  SKL L LF+ +L R   L+   + VT  +ADPGVV T + R    ++
Sbjct: 198 GRHAYSPYAAYAQSKLALALFALQLQR--ILDARGDPVTSNMADPGVVDTELYRHA-GWV 257

Query: 96  SRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGNGRTVKSSAR------SY 155
            R A   L  L + + PE+G  +++ AA A P+  GV      GR ++  A       + 
Sbjct: 258 LRTAKRFLGWL-VFKSPEEGAWTLVYAA-AAPELEGV-----GGRYLRDEAEAEPLGTAR 317

Query: 156 DTKLAKELWATSSNL 165
           D +L + LWA    L
Sbjct: 318 DQELQRRLWAEGLRL 322

[Close]

BLAST of Carg01355 vs. ExPASy TrEMBL
Match: A0A6J1JYL2 (dehydrogenase/reductase SDR family member on chromosome X-like OS=Cucurbita maxima OX=3661 GN=LOC111489467 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDT+CGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA
Sbjct: 219 VFDVQVDEDTICGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFT+LRLLRLLQLPEDGVNSILDAAFALP+TSGVYFFGG+
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTVLRLLRLLQLPEDGVNSILDAAFALPETSGVYFFGGD 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVT 177
           GRTVKSSA SYDTKLAKELWA SSNLFLKSQIAIEG T
Sbjct: 339 GRTVKSSAWSYDTKLAKELWAMSSNLFLKSQIAIEGGT 376

[Close]

BLAST of Carg01355 vs. ExPASy TrEMBL
Match: A0A6J1FGW7 (dehydrogenase/reductase SDR family member on chromosome X-like OS=Cucurbita moschata OX=3662 GN=LOC111445574 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLEN SNKVTVVVA
Sbjct: 219 VFDVQVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENRSNKVTVVVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFAL +TSGVYFFGG+
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALSETSGVYFFGGD 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTS 178
            RTVKSSARSYDTKLAKELWATS NLFLKSQIAIEG TS
Sbjct: 339 SRTVKSSARSYDTKLAKELWATSFNLFLKSQIAIEGGTS 377

[Close]

BLAST of Carg01355 vs. ExPASy TrEMBL
Match: A0A1S4DT43 (dehydrogenase/reductase SDR family member on chromosome X-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503643 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDTVCGK F GLDQYPC+SIY+YSKLCLLLFSYELHRKLSLEN S+K+TV VA
Sbjct: 219 VFDVQVDEDTVCGKCFWGLDQYPCSSIYQYSKLCLLLFSYELHRKLSLENESHKLTVNVA 278

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTIL LLRLLQLP+DGVNSILDAA A P+TSGVYFFGG 
Sbjct: 279 DPGVVKTNIMREVPTYLSRVAFTILMLLRLLQLPKDGVNSILDAALASPETSGVYFFGGK 338

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTS 178
           GR V+SSA+SYD KLA+ELW TSSNLFLKSQI++EG TS
Sbjct: 339 GRRVRSSAQSYDAKLAEELWETSSNLFLKSQISVEGGTS 377

[Close]

BLAST of Carg01355 vs. ExPASy TrEMBL
Match: A0A5A7U2W8 (Dehydrogenase/reductase SDR family member on chromosome X-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00330 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDTVCGK F GLDQYPC+SIY+YSKLCLLLFSYELHRKLSLEN S+K+TV VA
Sbjct: 195 VFDVQVDEDTVCGKCFWGLDQYPCSSIYQYSKLCLLLFSYELHRKLSLENESHKLTVNVA 254

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTIL LLRLLQLP+DGVNSILDAA A P+TSGVYFFGG 
Sbjct: 255 DPGVVKTNIMREVPTYLSRVAFTILMLLRLLQLPKDGVNSILDAALASPETSGVYFFGGK 314

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTS 178
           GR V+SSA+SYD KLA+ELW TSSNLFLKSQI++EG TS
Sbjct: 315 GRRVRSSAQSYDAKLAEELWETSSNLFLKSQISVEGGTS 353

[Close]

BLAST of Carg01355 vs. ExPASy TrEMBL
Match: A0A1S4DSB3 (dehydrogenase/reductase SDR family member on chromosome X-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503643 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 19  VFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVA 78
           VFDV+VDEDTVCGK F GLDQYPC+SIY+YSKLCLLLFSYELHRKLSLEN S+K+TV VA
Sbjct: 184 VFDVQVDEDTVCGKCFWGLDQYPCSSIYQYSKLCLLLFSYELHRKLSLENESHKLTVNVA 243

Query: 79  DPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGGN 138
           DPGVVKTNIMREVPTYLSRVAFTIL LLRLLQLP+DGVNSILDAA A P+TSGVYFFGG 
Sbjct: 244 DPGVVKTNIMREVPTYLSRVAFTILMLLRLLQLPKDGVNSILDAALASPETSGVYFFGGK 303

Query: 139 GRTVKSSARSYDTKLAKELWATSSNLFLKSQIAIEGVTS 178
           GR V+SSA+SYD KLA+ELW TSSNLFLKSQI++EG TS
Sbjct: 304 GRRVRSSAQSYDAKLAEELWETSSNLFLKSQISVEGGTS 342

[Close]

BLAST of Carg01355 vs. TAIR 10
Match: AT5G15940.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-45
Identity = 88/154 (57.14%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 17  YTVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVV 76
           ++ F  ++D+D+V G  F   +QYPCA IYEYSKLCLLLFSYELHR+L L + S+ V+V+
Sbjct: 206 HSAFIQKLDKDSVTGVCFSTSNQYPCARIYEYSKLCLLLFSYELHRQLRLIDDSSHVSVI 265

Query: 77  VADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFG 136
            ADPG VKTNIMRE+P Y++ + F   ++L LLQ PEDG  SI+DAA + P+TSG Y+FG
Sbjct: 266 AADPGFVKTNIMRELPCYITSMVFLGFKILGLLQSPEDGAESIIDAALSTPETSGAYYFG 325

Query: 137 GNGRTVKSSARSYDTKLAKELWATSSNLFLKSQI 171
           G GRT++SS  S D KLAK+LW TS +LF   Q+
Sbjct: 326 GKGRTIESSQVSRDPKLAKQLWETSCDLFNDLQL 359

[Close]

BLAST of Carg01355 vs. TAIR 10
Match: AT5G04070.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-41
Identity = 85/152 (55.92%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 18  TVFDVRVDEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVV 77
           + F  R D D+V G  F    QYPCA IYEYSKLCLLLFSYELHR+L L + S+ ++VV 
Sbjct: 206 SAFTGRFDMDSVTGVNFSRSKQYPCARIYEYSKLCLLLFSYELHRQLHLMDDSHHISVVA 265

Query: 78  ADPGVVKTNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAAFALPDTSGVYFFGG 137
            DPG VKTNIM E+P+Y+  +AF  L++L L+Q PED   S++DAA A P+ SG YFFG 
Sbjct: 266 VDPGAVKTNIMHELPSYIQVIAFCGLKILGLMQSPEDAAESVIDAALAPPEISGKYFFG- 325

Query: 138 NGRTVKSSARSYDTKLAKELWATSSNLFLKSQ 170
            GRT++SS  S D K+AKELW TS  +F + Q
Sbjct: 326 -GRTIESSTLSSDPKMAKELWDTSCLIFNELQ 355

[Close]

BLAST of Carg01355 vs. TAIR 10
Match: AT5G53090.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-05
Identity = 39/151 (25.83%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 25  DEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVK 84
           D + V GKR     ++     Y  SKL  ++FS  L ++L LE    +++VV   PG+V 
Sbjct: 210 DMNVVSGKR-----KFTSLVGYSGSKLAQVMFSNVLLKRLPLE---TRISVVCLSPGIVL 269

Query: 85  TNIMREVPTYLSRVAFTILRLLRLLQLPEDGVNSILDAA-----------FALPDTSGVY 144
           TN+ R++P Y+ +V + ++     +  P++G  S L +A               D     
Sbjct: 270 TNVARDLPRYV-QVQYALIPY--FIFSPQEGSRSTLFSATDAQIPEHCEKLKTEDKPVCT 329

Query: 145 FFGGNGRTVKSSARSYDTKLAKELWATSSNL 165
           F   N +  K S  +++ + A+ +W  +  L
Sbjct: 330 FISQNCKHTKPSEEAHNVETAERVWEKTIKL 349

[Close]

BLAST of Carg01355 vs. TAIR 10
Match: AT5G53100.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.1e-05
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 25  DEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVK 84
           D + V GKR     ++   S Y  SKL  ++F+  L +KL LE G   ++VV   PGVV+
Sbjct: 200 DMNFVSGKR-----KFSSLSAYSSSKLAQVMFNNVLLKKLPLETG---ISVVCLSPGVVQ 259

Query: 85  TNIMREVP 93
           TNI R++P
Sbjct: 260 TNITRDLP 259

[Close]

BLAST of Carg01355 vs. TAIR 10
Match: AT4G27760.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-05
Identity = 43/152 (28.29%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 25  DEDTVCGKRFVGLDQYPCASIYEYSKLCLLLFSYELHRKLSLENGSNKVTVVVADPGVVK 84
           D + V G+R     +Y     Y  SKL  ++FS  L +KL LE G   V+VV   PGVV 
Sbjct: 211 DMNVVSGRR-----KYSSLIGYSSSKLAQIMFSSILFKKLPLETG---VSVVCLSPGVVL 270

Query: 85  TNIMREVPTYLSRVAFTILRLL-RLLQLPEDGVNSILDAA-----------FALPDTSGV 144
           TN+ R+    LSR+   +  ++   +  P++G  S L +A               D    
Sbjct: 271 TNVARD----LSRILQALYAVIPYFIFSPQEGCRSSLFSATDPQIPEYWETLKNDDWPVC 330

Query: 145 YFFGGNGRTVKSSARSYDTKLAKELWATSSNL 165
            F   + R    S  +++T+ A+ +W  +  L
Sbjct: 331 PFISQDCRPANPSEEAHNTETAQRVWKKTLEL 350

The following BLAST results are available for this feature:

BLAST of Carg01355 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016663.1	2.5e-92	100.00	Dehydrogenase/reductase SDR family member on chromosome X, partial [Cucurbita ar...	[more]
KAG6579145.1	3.5e-83	96.41	Dehydrogenase/reductase SDR family member on chromosome X, partial [Cucurbita ar...	[more]
XP_023551555.1	3.9e-82	99.38	dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita pepo s...	[more]
XP_022993465.1	3.8e-77	94.94	dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita maxima...	[more]
XP_022939811.1	3.2e-76	94.97	dehydrogenase/reductase SDR family member on chromosome X-like [Cucurbita moscha...	[more]

BLAST of Carg01355 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8N5I4	3.3e-07	30.06	Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens OX=960...	[more]
Q8NBN7	1.5e-04	32.31	Retinol dehydrogenase 13 OS=Homo sapiens OX=9606 GN=RDH13 PE=1 SV=2	[more]
Q8VBZ0	4.5e-04	32.59	Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculu...	[more]

BLAST of Carg01355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYL2	1.8e-77	94.94	dehydrogenase/reductase SDR family member on chromosome X-like OS=Cucurbita maxi...	[more]
A0A6J1FGW7	1.6e-76	94.97	dehydrogenase/reductase SDR family member on chromosome X-like OS=Cucurbita mosc...	[more]
A0A1S4DT43	2.0e-68	84.91	dehydrogenase/reductase SDR family member on chromosome X-like isoform X1 OS=Cuc...	[more]
A0A5A7U2W8	2.0e-68	84.91	Dehydrogenase/reductase SDR family member on chromosome X-like isoform X2 OS=Cuc...	[more]
A0A1S4DSB3	2.0e-68	84.91	dehydrogenase/reductase SDR family member on chromosome X-like isoform X2 OS=Cuc...	[more]

BLAST of Carg01355 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15940.1	2.4e-45	57.14	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G04070.1	3.6e-41	55.92	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G53090.1	4.1e-05	25.83	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G53100.1	7.1e-05	41.18	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G27760.1	9.2e-05	28.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 5..168 e-value: 1.2E-15 score: 59.3
None	No IPR available	PANTHER	PTHR24320:SF185	BNACNNG10380D PROTEIN	coord: 18..170
None	No IPR available	PANTHER	PTHR24320	RETINOL DEHYDROGENASE	coord: 18..170
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 40..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01355-RA	Carg01355-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity