Carg01308 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01308
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	auxin-responsive protein SAUR71 isoform X1
Location	Carg_Chr06: 38211 .. 39865 (-)
RNA-Seq Expression	Carg01308
Synteny	Carg01308

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCTTCTTCGCCGGTATCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCGCATTTTCTGCGCTTGGATTCGCCTCACTCTTCCACCTCTCCTCCATTGTTGTACAATTCCTTGTCTTTATTATAATTCTTCATCCATTCCATTTCAGACATTGTAAAACACGTTTTCCTCGAATTCGAATTTTAACCTCACCGTTTCCTGTTGTCTTGACCCTTTTTTTTCCCTCCTTTATTGTCAATCAGGTAATATCATCATTGTTGTTCCCTTGCGTTGCATTGCATTGCAACCTTCTTACAGACTTTGATTCTGGTTTTGAATCTCAATGTGAGGAACGAATGGTGAGAGGGAATTTTAGTCTCTTGTACATGATTTGATGAATCAAATGGATCCTACTCTGATTATTATTGTTTCTTTATTTGTTGGTTGTATGGAGCATGCTTGTGTTTCTCTTTCTTTCTTCTTGCTATAGTACAGCCTTTCCTTTTATTTCCTCTACTTGATTTTCTACTTTGAGCTTTTTACTATTTTAGTTTGTTAGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGGTAGTGGTGTTCTGATGAGAATTGTGTTTCTGGAATTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGTTTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAACATCCACCCGACGTCCCAAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATAGCGGCGGCCTCACATTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAAAGCCAGCACAAGGATCATCCTGATGACCACACCCCAGGTAATAAATTGTATTTGTATGCATACCCATTTGGTTTGCAAAGCTGATAGTTGTTGACTTTGGTATGAATTCCATTAGTATTATGACATGAATAACATGCTTCCTGTTATTGACTTCGGTTGCAGCTGGGAGTTCCTTAACCATGGAAGGATAAAAAAAAAAAATGGTTGTGATCCACAGCAGAGGGGGCGCTGTTTGCAAAGGCAGATGGATGTGTGTGTGCCTGCCACACATGAGATATGTTGTGAAATTGAAGTGTTGTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTGGAGTCAGAAAAATTAGGGATGTGTTTAAGTAGTAGTTAGAAAAGTGGAGGATTAATGTACCGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGCTTTGTTTTTTGCTTTTGCTTTTGTTTTTGGGAATACCCTCTCAGGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

mRNA sequence

ATGCTCTTCTTCTTCGCCGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

Coding sequence (CDS)

ATGCTCTTCTTCTTCGCCGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

Protein sequence

MLFFFAVSFKTILLPAISTSRHSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKRLTNGRCELPFASLYLNVKHMIV

Homology

[Close]

BLAST of Carg01308 vs. NCBI nr
Match: KAG7027697.1 (hypothetical protein SDJN02_08874, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 7.5e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MLFFFAVSFKTILLPAISTSRHSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETL 60
           MLFFFAVSFKTILLPAISTSRHSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETL
Sbjct: 1   MLFFFAVSFKTILLPAISTSRHSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETL 60

Query: 61  QHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKRLTNGRCELPFASLYLNVKHMIV 120
           QHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKRLTNGRCELPFASLYLNVKHMIV
Sbjct: 61  QHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKRLTNGRCELPFASLYLNVKHMIV 120

[Close]

BLAST of Carg01308 vs. NCBI nr
Match: XP_023539667.1 (uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQS
Sbjct: 10  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQS 69

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QNLNQNNGILSPAINKRLTN  C
Sbjct: 70  QNLNQNNGILSPAINKRLTNVLC 92

[Close]

BLAST of Carg01308 vs. NCBI nr
Match: XP_022940030.1 (uncharacterized protein LOC111445786 isoform X1 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQS
Sbjct: 10  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQS 69

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QNLN NNGILSPAINKRLTN  C
Sbjct: 70  QNLNLNNGILSPAINKRLTNVLC 92

[Close]

BLAST of Carg01308 vs. NCBI nr
Match: XP_022971372.1 (uncharacterized protein LOC111470119 isoform X1 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 8.3e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 23  SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQ 82
           SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGV INP+SKAAAHEN SQ
Sbjct: 149 SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVAINPISKAAAHENPSQ 208

Query: 83  NLNQNNGILSPAINKRLTNGRC 105
           N+NQNNGILSPAINKRLTN  C
Sbjct: 209 NINQNNGILSPAINKRLTNVLC 230

[Close]

BLAST of Carg01308 vs. NCBI nr
Match: XP_008460569.1 (PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 5.2e-30
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           H EFC GVL NCGERLEMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN S
Sbjct: 3   HCEFCAGVLLNCGERLEMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGS 62

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QN NQN+GILSPAINKRLTN  C
Sbjct: 63  QNQNQNHGILSPAINKRLTNVLC 84

[Close]

BLAST of Carg01308 vs. ExPASy TrEMBL
Match: A0A6J1FPE8 (uncharacterized protein LOC111445786 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445786 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.6e-38
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQS
Sbjct: 10  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQS 69

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QNLN NNGILSPAINKRLTN  C
Sbjct: 70  QNLNLNNGILSPAINKRLTNVLC 92

[Close]

BLAST of Carg01308 vs. ExPASy TrEMBL
Match: A0A6J1I1S2 (uncharacterized protein LOC111470119 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470119 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 23  SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQ 82
           SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGV INP+SKAAAHEN SQ
Sbjct: 149 SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVAINPISKAAAHENPSQ 208

Query: 83  NLNQNNGILSPAINKRLTNGRC 105
           N+NQNNGILSPAINKRLTN  C
Sbjct: 209 NINQNNGILSPAINKRLTNVLC 230

[Close]

BLAST of Carg01308 vs. ExPASy TrEMBL
Match: A0A5D3CU42 (Auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00920 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           H EFC GVL NCGERLEMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN S
Sbjct: 8   HCEFCAGVLLNCGERLEMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGS 67

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QN NQN+GILSPAINKRLTN  C
Sbjct: 68  QNQNQNHGILSPAINKRLTNVLC 89

[Close]

BLAST of Carg01308 vs. ExPASy TrEMBL
Match: A0A1S3CCR9 (auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499361 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           H EFC GVL NCGERLEMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN S
Sbjct: 3   HCEFCAGVLLNCGERLEMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGS 62

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QN NQN+GILSPAINKRLTN  C
Sbjct: 63  QNQNQNHGILSPAINKRLTNVLC 84

[Close]

BLAST of Carg01308 vs. ExPASy TrEMBL
Match: A0A6J1FIL4 (auxin-responsive protein SAUR71-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445786 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQSQNLN NNGILSPAINKR
Sbjct: 1   MDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQSQNLNLNNGILSPAINKR 60

Query: 99  LTNGRC 105
           LTN  C
Sbjct: 61  LTNVLC 66

[Close]

BLAST of Carg01308 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDEN   KLTGIRQIVRLKE LQ WQ VTI P S+        Q +     ++SPAINKR
Sbjct: 1   MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAV----AMISPAINKR 57

Query: 99  L 100
           L
Sbjct: 61  L 57

[Close]

BLAST of Carg01308 vs. TAIR 10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDEN   KLTGIRQIVRLKE LQ WQ VTI P S+        Q +     ++SPAINKR
Sbjct: 1   MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAV----AMISPAINKR 57

Query: 99  L 100
           L
Sbjct: 61  L 57

[Close]

BLAST of Carg01308 vs. TAIR 10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 57.4 bits (137), Expect = 9.3e-09
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDEN   KLTGI+QIVRLKE LQ WQ VTI   S     ++      ++  I+SP INKR
Sbjct: 1   MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKS-----DDGELGARKHTAIISPVINKR 56

Query: 99  L 100
           L
Sbjct: 61  L 56

The following BLAST results are available for this feature:

BLAST of Carg01308 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027697.1	7.5e-61	100.00	hypothetical protein SDJN02_08874, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023539667.1	3.1e-38	96.39	uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022940030.1	2.0e-37	95.18	uncharacterized protein LOC111445786 isoform X1 [Cucurbita moschata]	[more]
XP_022971372.1	8.3e-36	92.68	uncharacterized protein LOC111470119 isoform X1 [Cucurbita maxima]	[more]
XP_008460569.1	5.2e-30	84.34	PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo]	[more]

BLAST of Carg01308 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPE8	9.6e-38	95.18	uncharacterized protein LOC111445786 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I1S2	4.0e-36	92.68	uncharacterized protein LOC111470119 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3CU42	2.5e-30	84.34	Auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CCR9	2.5e-30	84.34	auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034993...	[more]
A0A6J1FIL4	4.9e-26	93.94	auxin-responsive protein SAUR71-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg01308 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20810.1	6.4e-10	57.38	SAUR-like auxin-responsive protein family	[more]
AT5G20810.2	6.4e-10	57.38	SAUR-like auxin-responsive protein family	[more]
AT3G43120.1	9.3e-09	52.46	SAUR-like auxin-responsive protein family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01308-RA	Carg01308-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0016021	integral component of membrane