Carg01288 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01288
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	TFIIS N-terminal domain-containing protein
Location	Carg_Chr06: 208625 .. 211799 (-)
RNA-Seq Expression	Carg01288
Synteny	Carg01288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAACCCCTCATTGCAGGGCTTGGGTTTTATCAATCCCCTTCTTCTGTTTTTTGATCCGATCCTTTCTTTTCACAAAACGAATATCTTCACACCACTACTCACTTTCATTTCGCTTCCAAACGGATGCAAGTTTGAGTGTTTGCGACTTTGTTGCTAACCATTTTTATTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTGGGGAGGGGTTTTCTTTTCTGGGTGTTGTTCATTTTGGGGGATTTCGTCAATATCCACCTCCAATCTTTTTTTGTTTTTCTTCGTATTTAGGTTTTTGTCCTTTGGAACTCTCACGGTGATGGAATTCCCACTTCGATTCTGAGTGGTTGTTTCAATTCCGTCCGTGTTCGATCGAGTTTGGTTTCTTCAGATTCCGATCATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAACAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGGTAATGAATGATTGTTTTGGGTCTTTACATTTTCTGGGATGTTCCTTTGTTTCTCATGTTGTGTGTTTCTTGTGCAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGTGATGGTTTGATTCTTCTGTTTGCTCTTGCAACTTTGGGGCAAGTTAAGTTTTGTTGGTTCTTCTTGTTTCTGATTGAGGATTTTTCTCTCTTTATCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACGTACTAAATCTTGCCTTCAAACCTCAATACCAAGTATACATGTTCTATGATGAGTGCCCCAACTAAATTTGTTGTTGACACTCTATATGTCATCTTCCTTTGGATTTGTTCTTTAAAACTTACTCATTTCATTTTGAACATATAAGAATCAGTGTTTGTTCTCTCTTCTTCAACCATGCAGCGTATTTTGTTTTTTGAGTGAGTCAAGAGCTTTTGTAGCTCATCTGTGCCTTTACAACTCGTTGCTCACTCAGGGAGTTCTCTGTTTTGCATAGCATATAAGGAGACCTCGTCTTTGATATCATTATAAATGGCTGCTTCTTGTTAGTTTACTTTGCTTGAGGGTAAAAGATCTACTTTATTGGTTGCAGAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTAGAGTTCATTTTAGCTACACGTGCATCTATATCGTTTCATGCCAACTTTCGAGATTTATTTACTGAGGAATGTTTTTGTTTTCCTGACAAAAAAGGTTCAGAAGTCACACCGGATTCAAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAAGTATGTCTCTATTTTCGAGTTGAATTGAGATTGTATTCTCGAGAAAAGTTATCTACTTTATGTTGCATTGGTGGGTTCTAATCGACTGTATTTTACTTGCCATTCCATTCCCTTCCTTGGCGAAGTTCTTCGATGGCATGGACGATGATGGAAGTGAGTTGATTATGCAGTATCCTATGCTTTTCTCACTCACTTTTTTAGACTCTCCATTTCTTAGATTCATGATTACCAATGGGGATATATGTTTCAGATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATGTAAGTAGCTGAAGATTGTGAAGTTATTTGGGGGTTTGTCCTTTGTCCTTGTACCTGATTTTTTTCTATTTGTTTCTACCAGAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGCTTTGTTTTGTTTTCCATCTATGCTTTTATCCATTCTGATACCAGTTTCATAGGCAGTCTAAAAGCTTTCTTGCTGAATATTTGAAGTATCAATCAAAGCAACTTTAGCTAAATATTTGCGCCCGAACATAGTTTAACTGGTTAAGGCGGTGTATATGACCAAAATGAGAGCACTTTTAAACACATTTCTGAAGTTGTTGAATATAACTAACTACATAAGTGCTGATTCATGGTGGTGTTTATTGAACAGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAGGATGAAACGATAGTGAGGAACAAGACTGATACTTCCAGGATACTTTCCTGGTGACTTTCCACCCAGAATCAGGTGGAAGATCATATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTTTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGG

mRNA sequence

AACAACCCCTCATTGCAGGGCTTGGGTTTTATCAATCCCCTTCTTCTGTTTTTTGATCCGATCCTTTCTTTTCACAAAACGAATATCTTCACACCACTACTCACTTTCATTTCGCTTCCAAACGGATGCAAGTTTGAGTGTTTGCGACTTTGTTGCTAACCATTTTTATTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTGGGGAGGGGTTTTCTTTTCTGGGTGTTGTTCATTTTGGGGGATTTCGTCAATATCCACCTCCAATCTTTTTTTGTTTTTCTTCGTATTTAGGTTTTTGTCCTTTGGAACTCTCACGGTGATGGAATTCCCACTTCGATTCTGAGTGGTTGTTTCAATTCCGTCCGTGTTCGATCGAGTTTGGTTTCTTCAGATTCCGATCATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAACAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCAAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTCGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAGGATGAAACGATAGTGAGGAACAAGACTGATACTTCCAGGATACTTTCCTGGTGACTTTCCACCCAGAATCAGGTGGAAGATCATATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTTTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGG

Coding sequence (CDS)

ATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAACAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCAAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTCGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAG

Protein sequence

MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR

Homology

[Close]

BLAST of Carg01288 vs. NCBI nr
Match: KAG6596180.1 (putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027717.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 861.7 bits (2225), Expect = 2.8e-246
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360
           QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360

Query: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420
           QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD
Sbjct: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420

Query: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           IPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Carg01288 vs. NCBI nr
Match: XP_022936188.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita moschata])

HSP 1 Score: 859.0 bits (2218), Expect = 1.8e-245
Identity = 445/447 (99.55%), Postives = 446/447 (99.78%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMP SEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360
           QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360

Query: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420
           QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD
Sbjct: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420

Query: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           IPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Carg01288 vs. NCBI nr
Match: XP_023539160.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 848.6 bits (2191), Expect = 2.5e-242
Identity = 440/447 (98.43%), Postives = 443/447 (99.11%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKS SLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSASLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKK DNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKHDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360
           QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSG SR QKPS+VQKDNHEKL
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSSVQKDNHEKL 360

Query: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420
           QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD
Sbjct: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420

Query: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           IPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Carg01288 vs. NCBI nr
Match: XP_022971199.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita maxima])

HSP 1 Score: 841.6 bits (2173), Expect = 3.0e-240
Identity = 440/453 (97.13%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of Carg01288 vs. NCBI nr
Match: XP_008443218.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo] >KAA0053912.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa] >TYK25493.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa])

HSP 1 Score: 728.4 bits (1879), Expect = 3.7e-206
Identity = 386/452 (85.40%), Postives = 414/452 (91.59%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQ+S+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           MELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Carg01288 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.8e-86
Identity = 215/462 (46.54%), Postives = 281/462 (60.82%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDGETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +    ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+    
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERR---- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNAN-SGFSRLQKPSTVQKDNHE 364
            QN  + K + T          + ++++   +  KP S  +  G  R  K ST Q+  +E
Sbjct: 304 PQNIAKRKPEGT----------QMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNE 363

Query: 365 KLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQESYQQAE 424
            +   K EKP I ++ +            Q+K K  D      K E  KRKLQESYQ  E
Sbjct: 364 TVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHE 423

Query: 425 NAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           NAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 NAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of Carg01288 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.5e-66
Identity = 180/427 (42.15%), Postives = 244/427 (57.14%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+ +   +  SS  + P 
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAGRRP- 306

Query: 305 RCKQQTTREVNVVAK---DNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQ 364
               + T + NVV +   D +++ +E  V+P K  +       R  K S  Q  +   +Q
Sbjct: 307 ----KGTNDANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--AIQ 366

Query: 365 RKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVME 424
           RK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQV+E
Sbjct: 367 RKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE 379

[Close]

BLAST of Carg01288 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-20
Identity = 127/442 (28.73%), Postives = 191/442 (43.21%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDGETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G     T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  ----FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDD-Y 247
           VN +RKH S  +R L + L+ +WKE VD WVK           P     P+   +ED   
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN--------QPGDLEPPSLIADEDSPV 242

Query: 248 EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNP 307
           +  L +    +   F   P                             NG  +SS + N 
Sbjct: 243 QKALHNGSRQQVPDFGYSPVP--------------------------QNGYSSSSKNSN- 302

Query: 308 MRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRK 367
                +  R+   VA     Q + +   P KP            +PS  Q+         
Sbjct: 303 ---ITEPERKPRPVA----PQPRRESPSPAKP-----------SRPSPSQQ--------- 353

Query: 368 VEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPK 427
               TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HDIPK
Sbjct: 363 ----TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPK 353

Query: 428 QGMGHRNVHLKSGGHN---RHW 443
              G      + GG +   RHW
Sbjct: 423 PKKG--GFFPRKGGSSQGGRHW 353

[Close]

BLAST of Carg01288 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 859.0 bits (2218), Expect = 8.9e-246
Identity = 445/447 (99.55%), Postives = 446/447 (99.78%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMP SEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360
           QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360

Query: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420
           QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD
Sbjct: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420

Query: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           IPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Carg01288 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 841.6 bits (2173), Expect = 1.5e-240
Identity = 440/453 (97.13%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of Carg01288 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.8e-206
Identity = 386/452 (85.40%), Postives = 414/452 (91.59%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQ+S+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           MELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Carg01288 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.8e-206
Identity = 386/452 (85.40%), Postives = 414/452 (91.59%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQ+S+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           MELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Carg01288 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 718.0 bits (1852), Expect = 2.4e-203
Identity = 381/452 (84.29%), Postives = 410/452 (90.71%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQ+S+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           MELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of Carg01288 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-87
Identity = 215/462 (46.54%), Postives = 281/462 (60.82%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDGETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +    ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+    
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERR---- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNAN-SGFSRLQKPSTVQKDNHE 364
            QN  + K + T          + ++++   +  KP S  +  G  R  K ST Q+  +E
Sbjct: 304 PQNIAKRKPEGT----------QMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNE 363

Query: 365 KLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQESYQQAE 424
            +   K EKP I ++ +            Q+K K  D      K E  KRKLQESYQ  E
Sbjct: 364 TVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHE 423

Query: 425 NAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 448
           NAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 NAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of Carg01288 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-67
Identity = 180/427 (42.15%), Postives = 244/427 (57.14%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+ +   +  SS  + P 
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAGRRP- 306

Query: 305 RCKQQTTREVNVVAK---DNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQ 364
               + T + NVV +   D +++ +E  V+P K  +       R  K S  Q  +   +Q
Sbjct: 307 ----KGTNDANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--AIQ 366

Query: 365 RKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVME 424
           RK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQV+E
Sbjct: 367 RKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE 379

[Close]

BLAST of Carg01288 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-51
Identity = 117/265 (44.15%), Postives = 162/265 (61.13%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 232

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQ 270
              PSPP D    +  +P   ELSQ
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of Carg01288 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-21
Identity = 127/442 (28.73%), Postives = 191/442 (43.21%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDGETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G     T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  ----FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEEDD-Y 247
           VN +RKH S  +R L + L+ +WKE VD WVK           P     P+   +ED   
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN--------QPGDLEPPSLIADEDSPV 242

Query: 248 EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNP 307
           +  L +    +   F   P                             NG  +SS + N 
Sbjct: 243 QKALHNGSRQQVPDFGYSPVP--------------------------QNGYSSSSKNSN- 302

Query: 308 MRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRK 367
                +  R+   VA     Q + +   P KP            +PS  Q+         
Sbjct: 303 ---ITEPERKPRPVA----PQPRRESPSPAKP-----------SRPSPSQQ--------- 353

Query: 368 VEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPK 427
               TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HDIPK
Sbjct: 363 ----TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPK 353

Query: 428 QGMGHRNVHLKSGGHN---RHW 443
              G      + GG +   RHW
Sbjct: 423 PKKG--GFFPRKGGSSQGGRHW 353

[Close]

BLAST of Carg01288 vs. TAIR 10
Match: AT3G48060.1 (BAH domain ;TFIIS helical bundle-like domain )

HSP 1 Score: 43.9 bits (102), Expect = 3.9e-04
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 156 DSVLFESLRRLELMALSVDALQATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD 213
           D  L   LR L+ + ++++ALQ   IGK+VN LR H +  I    R L+  WK+ V+
Sbjct: 354 DDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSLVDTWKKRVE 410

The following BLAST results are available for this feature:

BLAST of Carg01288 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596180.1	2.8e-246	100.00	putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucur...	[more]
XP_022936188.1	1.8e-245	99.55	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita mosc...	[more]
XP_023539160.1	2.5e-242	98.43	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo...	[more]
XP_022971199.1	3.0e-240	97.13	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita maxi...	[more]
XP_008443218.1	3.7e-206	85.40	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]

BLAST of Carg01288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	1.8e-86	46.54	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	3.5e-66	42.15	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	2.2e-20	28.73	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]

BLAST of Carg01288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCK1	8.9e-246	99.55	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]
A0A6J1I7W1	1.5e-240	97.13	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]
A0A5A7UDQ2	1.8e-206	85.40	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	1.8e-206	85.40	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A0A0LBK9	2.4e-203	84.29	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]

BLAST of Carg01288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	1.3e-87	46.54	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	2.5e-67	42.15	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	1.1e-51	44.15	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	1.6e-21	28.73	Transcription elongation factor (TFIIS) family protein	[more]
AT3G48060.1	3.9e-04	38.60	BAH domain ;TFIIS helical bundle-like domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 387..414
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 433..447
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..447
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..446
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 140..212 e-value: 2.87411E-20 score: 82.7414
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 141..213 e-value: 6.9E-15 score: 65.4
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 130..223 e-value: 1.1E-20 score: 75.1
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 134..222
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 163..211 e-value: 5.3E-10 score: 39.2
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 139..214 score: 20.201963
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..446

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01288-RA	Carg01288-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus