Carg01259 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01259
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ribosome production factor 1
Location	Carg_Chr06: 351995 .. 353900 (+)
RNA-Seq Expression	Carg01259
Synteny	Carg01259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAAATGAGAACAAGAAAAAACCCAAAACCCTTACAATCGGTGGGCTTCAACTCTGCCGCCTCTCCCGCTTCTCCACCGGCGCGCCTTTTCTTCTTCCTATTCCGCAATCTATATTTCGGGTTAGCTTTCTCTTTTCCACTTTCATTTATCGCTCTCTTTGCGTTTAATCGTCCTGCAATTACAGAATCAACGATTTTCGTTAGGGATTATTGGTCTTGTAGCTGCAGAAAATCGGATATTATCGTGTTGTTCTAGGTCTGGCAGTGTTCTGTACACTCGATCTTTGTTCTCATTTATGAAATTTTGCCCAACCCGAAACCAAGTTTTTATTCAAGTCTGCCCTTGCTTTCTTCTTTCTGCATTGTGTTTGTGTTCAACTTTGTTTTTTCCACACTCGCGAATCAACTTGGTTGTTCTAGGTTAAGGTTTGTTCTTTCTCTCGGTGACTTGCGGTCTAGTGCGGGCGCGTTTCTAAACTTGTATTTGCTAGGTTTTGATATTTTGAAGTTTGGTCGTGTGATTTGAACTTTTTACTAGATTATGAATGTGGGAATATAGTTTCACTTTCTTGACTACTTCGGTTTCAATGGTTGTATGTTTAGTATTTTAAGTTCTTCAATTTAAATATTTGTAGTCTGTAATATTGATGGTTGGTGGTTTTGATGACTTTTAATAACCTCAATGGTTGTTATTCATGTTTATAAGTATTGGTGTAATAAGAGAGCACAATTATGATATGTTTTCAACTTTCTGTAATTTGACTTCTAAATTTCAATTGGATGTCCTTCCCAAGTCCCAACAAATTATTTTGATGGTTGATAGTTTGGAATCTTGATGAAGCTTAAGAACCGAAATAATTGTTGGTGGTGTTGGAAATACTTATTAGGGTATGTTTTATTATGGCTTATTTAGAGAAAGCTAAAGTACTCATAAGCTTTTGACATACCCGTCTATTGTTTAATTTTGCACCATTGGTCAGATATGATTTGCTTCTCAACTTCACTTGTTCTATCTTTAATTTGTCAATTTTTGAATTATGTTACAGGTTGATCAGGGAGTATAAATGGGAGAGGAGAAGAAGAACAGGGATTTAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTTCATGCCAACCTCAAAAATCAGAAGAAGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGTGAAGAAGTATCATATCTTCTACTCATCTATTCTGTTTATCTTATATTTCAAAGTTTCTGACTTAGCATTTATCTTTTTTCTCTGTAGCCTCCTCCTAGGAAAACTCCTCGCACCATTGAGAACACCAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGGTTATCCTTCTTTTTGTTAAATCTTAGCATATGACATTGTTGTAGCTTTTATTTACTTTGTATTCATTTCGTTTAGTGTACACACTTGTAATATGTCCAGTTTTGATTTTCTGCAGCTATTTGCCGGAAATGATGCTGACGAATTTAGTTCCATCATAAAGCGGGACATTGTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTAGTGTAAGATTCTTCATTATTACTAGTTAGACAGTACTTTTATTTTTTTAGCAACTTGCACTTCACGTAAACCTTCCTAAAAGCATCCACATTTAGTGAGACTTGGTACCTTATATTTTAATCTTCTGCTTGTATGTGACTTACTATTTGCAGATTGGACCTGATTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAATGATTTGAAGAAGGTTCAACTCATATTTGTATTTTCTAATGAACACACAGAAGGAAAAGGAAAATTGGAAAATTAA

mRNA sequence

AAATAAAATGAGAACAAGAAAAAACCCAAAACCCTTACAATCGGTGGGCTTCAACTCTGCCGCCTCTCCCGCTTCTCCACCGGCGCGCCTTTTCTTCTTCCTATTCCGCAATCTATATTTCGGGTTGATCAGGGAGTATAAATGGGAGAGGAGAAGAAGAACAGGGATTTAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTTCATGCCAACCTCAAAAATCAGAAGAAGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGTGAAGAACCTCCTCCTAGGAAAACTCCTCGCACCATTGAGAACACCAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCCGGAAATGATGCTGACGAATTTAGTTCCATCATAAAGCGGGACATTGTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTAGTATTGGACCTGATTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAATGATTTGAAGAAGGTTCAACTCATATTTGTATTTTCTAATGAACACACAGAAGGAAAAGGAAAATTGGAAAATTAA

Coding sequence (CDS)

ATGGGAGAGGAGAAGAAGAACAGGGATTTAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTTCATGCCAACCTCAAAAATCAGAAGAAGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGTGAAGAACCTCCTCCTAGGAAAACTCCTCGCACCATTGAGAACACCAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCCGGAAATGATGCTGACGAATTTAGTTCCATCATAAAGCGGGACATTGTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTAGTATTGGACCTGATTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAATGATTTGAAGAAGGTTCAACTCATATTTGTATTTTCTAATGAACACACAGAAGGAAAAGGAAAATTGGAAAATTAA

Protein sequence

MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN

Homology

[Close]

BLAST of Carg01259 vs. NCBI nr
Match: KAG7027746.1 (Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.1 bits (806), Expect = 3.6e-82
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR
Sbjct: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN 164
           ISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN 163

[Close]

BLAST of Carg01259 vs. NCBI nr
Match: XP_022971273.1 (ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome production factor 1 [Cucurbita pepo subsp. pepo] >KAG6596207.1 Ribosome production factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR
Sbjct: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. NCBI nr
Match: XP_022943997.1 (ribosome production factor 1 [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKNRDL+PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR
Sbjct: 1   MGEEKKNRDLVPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 5.2e-65
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           K PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI+PKVLITTCRFNS+IGP F
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 133/144 (92.36%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEE KNR +IPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEE PPR
Sbjct: 1   MGEENKNRGIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           K PRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR+I+PKVLITTCRFNS+IGP F
Sbjct: 61  KIPRTIENTREVDETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPTF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 53/136 (38.97%), Postives = 72/136 (52.94%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEK----RKRAKARDAAEKQALELGEEPPPRKTPRTIEN 72
           S IKNK++R  +   LK +K+ EK    +KR K R+A       LG++ PP+  P+TIEN
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKKEREA-------LGDKAPPKPVPKTIEN 108

Query: 73  TREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVI 132
            R  DET   P DEE+      DEF+    +   PK+LITT          F  +L S+I
Sbjct: 109 QRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSII 168

Query: 133 PNAHYYKRGTNDLKKV 145
           PN+  Y R    LKK+
Sbjct: 169 PNSDVYYRRGLALKKI 177

[Close]

BLAST of Carg01259 vs. ExPASy Swiss-Prot
Match: Q6IQU6 (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREV 72
           S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP++ P+TIEN R  
Sbjct: 36  SEIKNKQRRHTMFLKLKEEKR-KKRMELKKKKKKERKALD--DKAPPKEVPKTIENQRIY 95

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVIPNAH 132
           DET   P+DEE+      DEFS+   R   PKVLITT          F  +L +VIP+A+
Sbjct: 96  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 155

Query: 133 YYKRGTNDLKKV 145
            Y R    LKKV
Sbjct: 156 VYYRRGLALKKV 164

[Close]

BLAST of Carg01259 vs. ExPASy Swiss-Prot
Match: Q5R631 (Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREV 72
           S IKNKE+R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  
Sbjct: 55  SEIKNKERR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   +   PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKV 145
            Y R    LKK+
Sbjct: 175 VYYRRGLALKKI 183

[Close]

BLAST of Carg01259 vs. ExPASy Swiss-Prot
Match: Q9H9Y2 (Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREV 72
           S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  
Sbjct: 55  SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   +   PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKV 145
            Y R    LKK+
Sbjct: 175 VYYRRGLALKKI 183

[Close]

BLAST of Carg01259 vs. ExPASy Swiss-Prot
Match: Q7TND5 (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-12
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREV 72
           S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  
Sbjct: 55  SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   R   PK+LITT             +L +VIP++H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 174

Query: 133 YYKRGTNDLKKV 145
            Y R    LKK+
Sbjct: 175 VYYRRGLALKKI 183

[Close]

BLAST of Carg01259 vs. ExPASy TrEMBL
Match: A0A6J1I6C8 (ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.0e-71
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR
Sbjct: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. ExPASy TrEMBL
Match: A0A6J1FUK1 (ribosome production factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111448557 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKNRDL+PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR
Sbjct: 1   MGEEKKNRDLVPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.5e-65
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           K PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI+PKVLITTCRFNS+IGP F
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.5e-65
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           K PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI+PKVLITTCRFNS+IGP F
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.6e-64
Identity = 131/144 (90.97%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60
           MGEEKKN+ ++PS IKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120
           K PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI+PK+LITTCRFNS+IGP F
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKV 145
           ISELLSVIPNAHYYKRGTNDLKK+
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKI 144

[Close]

BLAST of Carg01259 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-49
Identity = 99/143 (69.23%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 2   GEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRK 61
           G EK+N  ++PSMIKNK+KR++V+A  K++KKLEK+K+ +ARDAAEK+ALELGEEPP + 
Sbjct: 27  GGEKRN-VILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKM 86

Query: 62  TPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDFI 121
            P+TIENTRE DETVC+PDDEELFA  DADEF+ +++R+I PKVL+TTCRFNS+ GP  I
Sbjct: 87  IPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALI 146

Query: 122 SELLSVIPNAHYYKRGTNDLKKV 145
           SELLSVIPN+HY KRGT DLKK+
Sbjct: 147 SELLSVIPNSHYQKRGTYDLKKI 168

The following BLAST results are available for this feature:

BLAST of Carg01259 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027746.1	3.6e-82	100.00	Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022971273.1	1.9e-70	99.31	ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome product...	[more]
XP_022943997.1	2.4e-70	98.61	ribosome production factor 1 [Cucurbita moschata]	[more]
XP_008443155.1	5.2e-65	93.06	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_038906205.1	1.2e-64	92.36	ribosome production factor 1 [Benincasa hispida]	[more]

BLAST of Carg01259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVP1	1.7e-13	38.97	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
Q6IQU6	3.7e-13	40.91	Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1	[more]
Q5R631	1.4e-12	36.36	Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1	[more]
Q9H9Y2	3.1e-12	35.61	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2	[more]
Q7TND5	5.3e-12	35.61	Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2	[more]

BLAST of Carg01259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6C8	9.0e-71	99.31	ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV...	[more]
A0A6J1FUK1	1.2e-70	98.61	ribosome production factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111448557 PE=4 ...	[more]
A0A1S3B854	2.5e-65	93.06	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	2.5e-65	93.06	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LH42	3.6e-64	90.97	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]

BLAST of Carg01259 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	2.5e-49	69.23	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	GENE3D	3.40.50.10480		coord: 103..152 e-value: 1.2E-8 score: 36.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..72
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 1..144
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 103..145
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 1..144
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 103..163 score: 9.188345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01259-RA	Carg01259-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0042134	rRNA primary transcript binding
molecular_function	GO:0019843	rRNA binding