Carg01256 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01256
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BnaCnng07380D protein
Location	Carg_Chr06: 359389 .. 359676 (+)
RNA-Seq Expression	Carg01256
Synteny	Carg01256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATTCGTTGAATTGTTGGATGTTGGAGTGAGAATGGCCGCCAGATTTCACTCTCACTGTCCGCAAACTGCTCGCCTCTACTACCATCCTCCCTCCGATCACGACGGCGACCACCACCACCACCATAACTACTTCCACCACGTTTTTCAGGCCTACGACGGTGGGCGCCACGCCGGACCCTCCACGGACCTGGTGGAGGCATGCGGAGTCGACACGGTGGCTATGGCTAGGGGTTCCGACGCCGAAGTTGTGTCTTTCATTCAGCAACTTTTGATGATTTGA

mRNA sequence

ATGGGGAAATTCGTTGAATTGTTGGATGTTGGAGTGAGAATGGCCGCCAGATTTCACTCTCACTGTCCGCAAACTGCTCGCCTCTACTACCATCCTCCCTCCGATCACGACGGCGACCACCACCACCACCATAACTACTTCCACCACGTTTTTCAGGCCTACGACGGTGGGCGCCACGCCGGACCCTCCACGGACCTGGTGGAGGCATGCGGAGTCGACACGGTGGCTATGGCTAGGGGTTCCGACGCCGAAGTTGTGTCTTTCATTCAGCAACTTTTGATGATTTGA

Coding sequence (CDS)

ATGGGGAAATTCGTTGAATTGTTGGATGTTGGAGTGAGAATGGCCGCCAGATTTCACTCTCACTGTCCGCAAACTGCTCGCCTCTACTACCATCCTCCCTCCGATCACGACGGCGACCACCACCACCACCATAACTACTTCCACCACGTTTTTCAGGCCTACGACGGTGGGCGCCACGCCGGACCCTCCACGGACCTGGTGGAGGCATGCGGAGTCGACACGGTGGCTATGGCTAGGGGTTCCGACGCCGAAGTTGTGTCTTTCATTCAGCAACTTTTGATGATTTGA

Protein sequence

MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHAGPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI

Homology

[Close]

BLAST of Carg01256 vs. NCBI nr
Match: KAG7027749.1 (hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60

Query: 61 GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI 96
          GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI
Sbjct: 61 GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI 95

[Close]

BLAST of Carg01256 vs. NCBI nr
Match: KAG6596209.1 (hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA
Sbjct: 36  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 95

Query: 61  GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI 96
           GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI
Sbjct: 96  GPSTDLVEACGVDTVAMARGSDAEVVSFIQQLLMI 130

[Close]

BLAST of Carg01256 vs. NCBI nr
Match: KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 7.1e-30
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHDGD  +HHNY H  FQA DG RH 
Sbjct: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD--NHHNYLHQFFQASDGFRHG 60

Query: 61 GPSTDLVEACGVDTVAMARGSDAEVV 87
          G STDLV  CGV+TVAMARG DAE+V
Sbjct: 61 GHSTDLVTGCGVETVAMARGFDAEIV 84

[Close]

BLAST of Carg01256 vs. NCBI nr
Match: XP_008443147.1 (PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 uncharacterized protein E6C27_scaffold236G00060 [Cucumis melo var. makuwa] >TYK25450.1 uncharacterized protein E5676_scaffold352G005960 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.0e-29
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD DHHHH +Y H +FQAYDGGRH 
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GPSTDLVEACGVDTVAMARGSDAEVV 87
          G ST+LV A G+ T+A     DAE V
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENV 86

[Close]

BLAST of Carg01256 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-26
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGD-HHHHHNYFHHVFQAYDGGRH 60
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD D HHHHH+Y H +FQAYDGG  
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGH- 94

Query: 61  AGPSTDLVEACGVDTVAMARGSDAEVV 87
              ST+LV A G+ TVAM    DAE V
Sbjct: 95  ---STELVTAYGMKTVAMDGSFDAENV 117

[Close]

BLAST of Carg01256 vs. ExPASy TrEMBL
Match: A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD DHHHH +Y H +FQAYDGGRH 
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GPSTDLVEACGVDTVAMARGSDAEVV 87
          G ST+LV A G+ T+A     DAE V
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENV 86

[Close]

BLAST of Carg01256 vs. ExPASy TrEMBL
Match: A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD DHHHH +Y H +FQAYDGGRH 
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GPSTDLVEACGVDTVAMARGSDAEVV 87
          G ST+LV A G+ T+A     DAE V
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENV 86

[Close]

BLAST of Carg01256 vs. ExPASy TrEMBL
Match: A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGD-HHHHHNYFHHVFQAYDGGRH 60
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD D HHHHH+Y H +FQAYDGG  
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGH- 94

Query: 61  AGPSTDLVEACGVDTVAMARGSDAEVV 87
              ST+LV A G+ TVAM    DAE V
Sbjct: 95  ---STELVTAYGMKTVAMDGSFDAENV 117

[Close]

BLAST of Carg01256 vs. ExPASy TrEMBL
Match: A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          M K VELLDVGVRMAARFH+HCPQTARLYYHPPSDHD  HH    Y H +  AYDGG H+
Sbjct: 1  MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDDQHH----YLHQILHAYDGGGHS 60

Query: 61 GPSTDLVEACGVDTVAMARGS--DAEVV 87
            +   V  CG++T A AR    D E+V
Sbjct: 61 --TAHQVSGCGIETAARARARSFDTEIV 82

[Close]

BLAST of Carg01256 vs. ExPASy TrEMBL
Match: A0A059DHX5 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02351 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDG 57
           MGK+VELLD+GVR+AARFHSHCPQTARLYYHPPS+HD  HHHHH  FH    A DG
Sbjct: 55  MGKYVELLDLGVRVAARFHSHCPQTARLYYHPPSNHDDHHHHHHRDFHSSGGASDG 110

[Close]

BLAST of Carg01256 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 45/77 (58.44%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
          MGK+ E+LDVGVR+AARFHSHCPQTARLYYHPPS    D+HHHH     V     GG   
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPS----DNHHHHG---GVKDLIGGGGVL 60

Query: 61 GP---STDLVEACGVDT 75
          G    ST LV   G  T
Sbjct: 61 GSGQNSTGLVGGLGTGT 70

The following BLAST results are available for this feature:

BLAST of Carg01256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027749.1	2.9e-47	100.00	hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596209.1	2.9e-47	100.00	hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6580839.1	7.1e-30	80.23	hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008443147.1	6.0e-29	76.74	PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 unc...	[more]
KGN59359.1	6.2e-26	75.86	hypothetical protein Csa_002350 [Cucumis sativus]	[more]

BLAST of Carg01256 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ55	2.9e-29	76.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E5	2.9e-29	76.74	uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=...	[more]
A0A0A0LEL3	3.0e-26	75.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1	[more]
A0A6J1DN79	1.2e-19	61.36	uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A059DHX5	1.1e-15	76.79	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02351 PE=4 SV...	[more]

BLAST of Carg01256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	1.5e-14	58.44	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..83
None	No IPR available	PANTHER	PTHR33983:SF13	SUBFAMILY NOT NAMED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01256-RA	Carg01256-RA	mRNA