Carg01246 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01246
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase subunit
Location	Carg_Chr06: 420972 .. 424611 (+)
RNA-Seq Expression	Carg01246
Synteny	Carg01246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGATCATACCTATTTTTATTTCAGAACTGCGAAATGATCTACCAAAAAAGTCATCATCAGCCTGACAGCTTTAATCAATACATCAATGAGCTGCCTTCAGTTCTTCAAGAGAAAGCAGAAGTCATATATAATTCCCTTGCGAAGGATAAGGCTCCTGGTCTGGGACAAAAAGATGACTTTATCAGGCTGCTGGAGAATAAGTACCTGTCAAGTCTTGCACAGCCTGGAGAACCAGTTGGTGTACTCGCTGCTCAGTCTATCGGAGAGCCATCAACACAAATGACGTAAGACCCCCCACCCTGTTTCTAACTTTCAGGCTTTAATCATGTTATTTCTCTTCGAATAAGACTTCAGTTTAAGCTTTTCTTAATATATTAGGAATAAGTCATCGTAATTAGTGTTGATACTTGGATAAGAATGAACTTAGTTTTCCCTGGCTGTCTTGGTTAGAAATCAGTTGGCTGATAAGCGAGTATACTTAACAAAAGTTCAGGAAAAAAAAGTCACCTTCTCACTCTTTTTTAAAAAAGAGGAATTATTATCCCGTTAGATTGACTATATAGTGGCTGATTTCACTATCATTCTCTTTTGTTGTTGAAATGAAATGTGTCTTAGGTTGAACACATTTCATCATGCTGGGCGTGGTGAGATGAATGTGACTCTTGGAATTCCCCGCCTTCAAGAGATTTTGATGACTGCTTCACAAGATATTAAGACACCAATTATGACATGCCCATTGCGAGAGGGCTACTCAATGTAAGTTAAAATTACTGTTTCTTGATTCATTGCTACATGGTTATTTATCTAATCTCGTTATTACTAGTGTATATGTTGTATCCATAGAGTTAATATTCTCAGTCTACATAGTGACTTCGGCCACAATTACATTAGTATTTTTTTTATACTGTTTCCATTTAAAAAAAAAAAAAGAAAAAGAAATAAAGGTAAAGCTTGAAACTTATTGAACCATGGCGGAGAGAAATTTATAGATTGCAATGTATGTGAATTTTGCGGACACAAGTTAACTTGGTGATTTTGTAGGTCAAACTAACCTTACAATTGGTTACTTGACATAAGGGAGAGTATGAAAGTACAAATTATAACATGTTGTTCAATATTATTCTGAACCATAAAAATTGACTGTTATATGACAGGGATGATGCAAAGTGTCTTGCTAATAAGTTGAAGAAGATTACAGTAGCTGACATAATAGAAAGTATGGAAGTAACTGTTGTGCCATTTTCGCAACGGAAGCGAGAGATATGCAGTATTTATAAGCTTGAAATAAGATTTTACCCACTTGAAAGTAATCCACAGCATGCTCATGTATCTTCAGAAGATTTGGAAGAAATTTTGGAATTTGTGTTCGTTAGGGAGTTGGAAGATTCAATCCAAAATGAAATGCTCTTACTATCACGAATTAGTGGTATAAAAAATTTTGTGCCCGACTCACAATCAAAGGGTTTGAGTGAAAGCGATAAAGTAAGTAGCTCAGAACGTGAAGAAAATGATGATGATGATGATGTTGGCAATGACTTAGATGTTGCTGAAGATCTTGGTTTTGACATGAAAAAACAAAAACTTCGAACTACTGATGAGATGGATTATGAAGATGATTCGGAAGAGGAACTCAATGTGAAAGAACGGTCCGCAGGATTTGAAAGTGAAGTTGATCAAGGTGATGAGGCTGATATAACCAATGATGATACGATGGAAATTGTTAAAGACGCTACATCTGAGGATCAGACTGAGATAATAGATGTCTCAAAGTCCAATTCGAAAGGGAAAACAACCAAAACATCAAACAAAAAGAAGAAAGCTAAATCTGAATTCTCCAGAAAGGATTATGATAGAGCAATTTTTGTGTCAGCGAAGGGAAATCATTTTGAAGTCCATTTTAAGTTTACCAATGAACCTCATATTTTACTGACGCAGGTACTTTCTCACACTCGTCTATTTTCATCTGGATCTGGTTTTTTTGTTCCTTATGTTAGCACTTATGTATTTGTAGGAAGTAATCTGTTTAATCAGTTTGATATGTTTCAGTATTTTTGTTGGCTCTTTTCCTTTTGTTAATTTATTCTGTTTGGTTCATAATAGCCAAGTATGTAAGCGTCTATGGACAAGATGCCAAAATAATCTAGTATATATTAGTTAAATTATCTGAGTGAAGGCCAATTCCCTTGGTGCCTTTGAAAGTTTGCATGTCATTCCCCATTTCTTTGAACAACTTTTCTTAACCTCTTGCACGCGTTAGTACGAACAATGCCTCTTCAATCTCTTTTGAGGTGGAGCCTTGTGCTGCTTTAGACTCTAGCTTAAGAAAAACCATGGGTCCTTGGTATCTATCACCGTATTGGAGAGGAGGTGTCTTTGAGAGATATTTGATAGACGAATCCAAATTAATAGGTTCAAAACCTTTAGCTAGACAATCTCTTATAGGTTTTACTTACACACCGGTACCCATATTGCAGTTGTCCTGAGAACATTATACTTCCAAATTCAAGCGTGTGCGCGCTAAAACTATTGACGAGCAATAGCACACATATTCCTGTAGTTACTCATAGGTGGATCTAATTCTTCTATGCTCATTCGATAGTCTAGAAAATTGTTGGTGTAAATCTGTTTCTCATAATACATTGTGATTTTTTTATTTCTCCACTGACATCACTTTATGAACTTCCTTTCTGGCCTGTGAAACCAGATTGCTCAGAGAACGGCCCAGAAGGTGTCTATCCAAAGCTCTGGCAAAATCATCCGCTGTCAACAAATTACTTGCAAGGAAGGTCAGGTAATCTACCACGGGAATGATATTAAGGTAAGAAAGAATATCAAACCAGAGGAAAAGGAAAAAGTTCCTGCATTGCAGACGACTGGAGTCGACTTTAAGACGCTCTGGGAGTTACAAGATGAGCTTGATGCTAGATATATATATTCCAATGACATTCATGCCATGCTACAAACATATGGAGTGGAAGCGGCTAGGGAAACAATAATAAGAGAAATTCGAAACATTTTCAGTTCATATGGGATATCAGTCAATATTAGACATCTAACTCTAATTGCTGATTATATGACTCATTCTGGTGGGTACCGACCAATGAATCGATTAGGAGGCATAGCCGACTCAATATCTCCTTTCAGTCGAATGACTTTTGAGACGGCTGCAAGGTTCATTGTTCAAGCTGCATACCATGGGGAAGTAGACACCTTGGAAACTCCATCTGCTAGGATCTGTCTTGGTTTGCCAGTAAAGATGGGAACCGGTAGTTTTGATTTGATGCAGAAAATCGATGTCTGATGAGTCCCTTTGGTCTCATATCTTGAGTTTTGAGTTATTTGATCGACTAATTTAATCACCCATCAATTAATTAGTTGTCATTGGAAGAGATTGTCTGCAGTGTGTAGAATTTGGATGCTACAAGATTTTGTATTATTAGCTTATAGTTGTATTATTTATAGTGTTTACATGTAGAAACGAACATGCAAGGATGTTGAAAAGTCCAAAAAAATGGCACAAAATTTTGTCCCGTTGAGAAATACTTGGATTGTAATTAGTATTTTATCGACATGATATTCTGAACAGTCCTCTACTAGTTATCAAATCTGAACAGTCCTCTACTAGTTATCAAAT

mRNA sequence

ATGATTAGATCATACCTATTTTTATTTCAGAACTGCGAAATGATCTACCAAAAAAGTCATCATCAGCCTGACAGCTTTAATCAATACATCAATGAGCTGCCTTCAGTTCTTCAAGAGAAAGCAGAAGTCATATATAATTCCCTTGCGAAGGATAAGGCTCCTGGTCTGGGACAAAAAGATGACTTTATCAGGCTGCTGGAGAATAAGTACCTGTCAAGTCTTGCACAGCCTGGAGAACCAGTTGGTGTACTCGCTGCTCAGTCTATCGGAGAGCCATCAACACAAATGACGTTGAACACATTTCATCATGCTGGGCGTGGTGAGATGAATGTGACTCTTGGAATTCCCCGCCTTCAAGAGATTTTGATGACTGCTTCACAAGATATTAAGACACCAATTATGACATGCCCATTGCGAGAGGGCTACTCAATGGATGATGCAAAGTGTCTTGCTAATAAGTTGAAGAAGATTACAGTAGCTGACATAATAGAAAGTATGGAAGTAACTGTTGTGCCATTTTCGCAACGGAAGCGAGAGATATGCAGTATTTATAAGCTTGAAATAAGATTTTACCCACTTGAAAGTAATCCACAGCATGCTCATGTATCTTCAGAAGATTTGGAAGAAATTTTGGAATTTGTGTTCGTTAGGGAGTTGGAAGATTCAATCCAAAATGAAATGCTCTTACTATCACGAATTAGTGGTATAAAAAATTTTGTGCCCGACTCACAATCAAAGGGTTTGAGTGAAAGCGATAAAGTAAGTAGCTCAGAACGTGAAGAAAATGATGATGATGATGATGTTGGCAATGACTTAGATGTTGCTGAAGATCTTGGTTTTGACATGAAAAAACAAAAACTTCGAACTACTGATGAGATGGATTATGAAGATGATTCGGAAGAGGAACTCAATGTGAAAGAACGGTCCGCAGGATTTGAAAGTGAAGTTGATCAAGGTGATGAGGCTGATATAACCAATGATGATACGATGGAAATTGTTAAAGACGCTACATCTGAGGATCAGACTGAGATAATAGATGTCTCAAAGTCCAATTCGAAAGGGAAAACAACCAAAACATCAAACAAAAAGAAGAAAGCTAAATCTGAATTCTCCAGAAAGGATTATGATAGAGCAATTTTTGTGTCAGCGAAGGGAAATCATTTTGAAGTCCATTTTAAGTTTACCAATGAACCTCATATTTTACTGACGCAGATTGCTCAGAGAACGGCCCAGAAGGTGTCTATCCAAAGCTCTGGCAAAATCATCCGCTGTCAACAAATTACTTGCAAGGAAGGTCAGGTAATCTACCACGGGAATGATATTAAGGTAAGAAAGAATATCAAACCAGAGGAAAAGGAAAAAGTTCCTGCATTGCAGACGACTGGAGTCGACTTTAAGACGCTCTGGGAGTTACAAGATGAGCTTGATGCTAGATATATATATTCCAATGACATTCATGCCATGCTACAAACATATGGAGTGGAAGCGGCTAGGGAAACAATAATAAGAGAAATTCGAAACATTTTCAGTTCATATGGGATATCAGTCAATATTAGACATCTAACTCTAATTGCTGATTATATGACTCATTCTGGTGGGTACCGACCAATGAATCGATTAGGAGGCATAGCCGACTCAATATCTCCTTTCAGTCGAATGACTTTTGAGACGGCTGCAAGGTTCATTGTTCAAGCTGCATACCATGGGGAAGTAGACACCTTGGAAACTCCATCTGCTAGGATCTGTCTTGGTTTGCCAGTAAAGATGGGAACCGGTAGTTTTGATTTGATGCAGAAAATCGATGTCTGATGAGTCCCTTTGGTCTCATATCTTGAGTTTTGAGTTATTTGATCGACTAATTTAATCACCCATCAATTAATTAGTTGTCATTGGAAGAGATTGTCTGCAGTGTGTAGAATTTGGATGCTACAAGATTTTGTATTATTAGCTTATAGTTGTATTATTTATAGTGTTTACATGTAGAAACGAACATGCAAGGATGTTGAAAAGTCCAAAAAAATGGCACAAAATTTTGTCCCGTTGAGAAATACTTGGATTGTAATTAGTATTTTATCGACATGATATTCTGAACAGTCCTCTACTAGTTATCAAATCTGAACAGTCCTCTACTAGTTATCAAAT

Coding sequence (CDS)

ATGATTAGATCATACCTATTTTTATTTCAGAACTGCGAAATGATCTACCAAAAAAGTCATCATCAGCCTGACAGCTTTAATCAATACATCAATGAGCTGCCTTCAGTTCTTCAAGAGAAAGCAGAAGTCATATATAATTCCCTTGCGAAGGATAAGGCTCCTGGTCTGGGACAAAAAGATGACTTTATCAGGCTGCTGGAGAATAAGTACCTGTCAAGTCTTGCACAGCCTGGAGAACCAGTTGGTGTACTCGCTGCTCAGTCTATCGGAGAGCCATCAACACAAATGACGTTGAACACATTTCATCATGCTGGGCGTGGTGAGATGAATGTGACTCTTGGAATTCCCCGCCTTCAAGAGATTTTGATGACTGCTTCACAAGATATTAAGACACCAATTATGACATGCCCATTGCGAGAGGGCTACTCAATGGATGATGCAAAGTGTCTTGCTAATAAGTTGAAGAAGATTACAGTAGCTGACATAATAGAAAGTATGGAAGTAACTGTTGTGCCATTTTCGCAACGGAAGCGAGAGATATGCAGTATTTATAAGCTTGAAATAAGATTTTACCCACTTGAAAGTAATCCACAGCATGCTCATGTATCTTCAGAAGATTTGGAAGAAATTTTGGAATTTGTGTTCGTTAGGGAGTTGGAAGATTCAATCCAAAATGAAATGCTCTTACTATCACGAATTAGTGGTATAAAAAATTTTGTGCCCGACTCACAATCAAAGGGTTTGAGTGAAAGCGATAAAGTAAGTAGCTCAGAACGTGAAGAAAATGATGATGATGATGATGTTGGCAATGACTTAGATGTTGCTGAAGATCTTGGTTTTGACATGAAAAAACAAAAACTTCGAACTACTGATGAGATGGATTATGAAGATGATTCGGAAGAGGAACTCAATGTGAAAGAACGGTCCGCAGGATTTGAAAGTGAAGTTGATCAAGGTGATGAGGCTGATATAACCAATGATGATACGATGGAAATTGTTAAAGACGCTACATCTGAGGATCAGACTGAGATAATAGATGTCTCAAAGTCCAATTCGAAAGGGAAAACAACCAAAACATCAAACAAAAAGAAGAAAGCTAAATCTGAATTCTCCAGAAAGGATTATGATAGAGCAATTTTTGTGTCAGCGAAGGGAAATCATTTTGAAGTCCATTTTAAGTTTACCAATGAACCTCATATTTTACTGACGCAGATTGCTCAGAGAACGGCCCAGAAGGTGTCTATCCAAAGCTCTGGCAAAATCATCCGCTGTCAACAAATTACTTGCAAGGAAGGTCAGGTAATCTACCACGGGAATGATATTAAGGTAAGAAAGAATATCAAACCAGAGGAAAAGGAAAAAGTTCCTGCATTGCAGACGACTGGAGTCGACTTTAAGACGCTCTGGGAGTTACAAGATGAGCTTGATGCTAGATATATATATTCCAATGACATTCATGCCATGCTACAAACATATGGAGTGGAAGCGGCTAGGGAAACAATAATAAGAGAAATTCGAAACATTTTCAGTTCATATGGGATATCAGTCAATATTAGACATCTAACTCTAATTGCTGATTATATGACTCATTCTGGTGGGTACCGACCAATGAATCGATTAGGAGGCATAGCCGACTCAATATCTCCTTTCAGTCGAATGACTTTTGAGACGGCTGCAAGGTTCATTGTTCAAGCTGCATACCATGGGGAAGTAGACACCTTGGAAACTCCATCTGCTAGGATCTGTCTTGGTTTGCCAGTAAAGATGGGAACCGGTAGTTTTGATTTGATGCAGAAAATCGATGTCTGA

Protein sequence

MIRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV

Homology

[Close]

BLAST of Carg01246 vs. NCBI nr
Match: KAG7027759.1 (DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1162.5 bits (3006), Expect = 0.0e+00
Identity = 602/602 (100.00%), Postives = 602/602 (100.00%), Query Frame = 0


Query: 1   MIRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKD 60
           MIRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKD
Sbjct: 1   MIRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKD 60

Query: 61  DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQE 120
           DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQE
Sbjct: 61  DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQE 120

Query: 121 ILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREI 180
           ILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREI
Sbjct: 121 ILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREI 180

Query: 181 CSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFV 240
           CSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFV
Sbjct: 181 CSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFV 240

Query: 241 PDSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSE 300
           PDSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSE
Sbjct: 241 PDSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSE 300

Query: 301 EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS 360
           EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS
Sbjct: 301 EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS 360

Query: 361 NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 420
           NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK
Sbjct: 361 NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 420

Query: 421 IIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYI 480
           IIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYI
Sbjct: 421 IIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYI 480

Query: 481 YSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRL 540
           YSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRL
Sbjct: 481 YSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRL 540

Query: 541 GGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI 600
           GGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI
Sbjct: 541 GGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI 600

Query: 601 DV 603
           DV
Sbjct: 601 DV 602

[Close]

BLAST of Carg01246 vs. NCBI nr
Match: XP_022938891.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata])

HSP 1 Score: 1136.7 bits (2939), Expect = 0.0e+00
Identity = 589/595 (98.99%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS AKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSS+REENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
             SAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 PSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGND KVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1695

[Close]

BLAST of Carg01246 vs. NCBI nr
Match: XP_022971295.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima])

HSP 1 Score: 1134.8 bits (2934), Expect = 0.0e+00
Identity = 588/595 (98.82%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS AKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSS+REENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
             SAGFESEVDQGDEADITNDDTMEIVKDATSEDQT IIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 PSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTVIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFV+AKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVAAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1695

[Close]

BLAST of Carg01246 vs. NCBI nr
Match: XP_023538901.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1134.0 bits (2932), Expect = 0.0e+00
Identity = 587/595 (98.66%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS AKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSS+REENDDDD+VGNDLDVAEDLGFDMKKQKLRT DEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSQREENDDDDEVGNDLDVAEDLGFDMKKQKLRTNDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
             SAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 PSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFV+AKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVAAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1695

[Close]

BLAST of Carg01246 vs. NCBI nr
Match: KAG6596219.1 (DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1133.6 bits (2931), Expect = 0.0e+00
Identity = 590/595 (99.16%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
            RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLT   QRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLT---QRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1692

[Close]

BLAST of Carg01246 vs. ExPASy Swiss-Prot
Match: Q9SVY0 (DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1 PE=3 SV=1)

HSP 1 Score: 589.0 bits (1517), Expect = 6.2e-167
Identity = 331/606 (54.62%), Postives = 431/606 (71.12%), Query Frame = 0


Query: 2    IRSYLFLFQNCEMIYQK-SHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDK--APGLGQ 61
            I  +  L  N +M+ QK S       + YI++LP  L++ AE    ++  ++  A    +
Sbjct: 1076 IEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVR 1135

Query: 62   KDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRL 121
            +++ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1136 QEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1195

Query: 122  QEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKR 181
            QEILMTA+ +IKTPIMTCPL +G + +DA  + ++L+KITVADII+SME++VVP++  + 
Sbjct: 1196 QEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYEN 1255

Query: 182  EICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKN 241
            E+CSI+KL+I  Y  E  P+H  ++ ED EE +  VF+R+LED+I+  M +L RI GI N
Sbjct: 1256 EVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHN 1315

Query: 242  FVPDSQSKGLSES-DKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYED 301
             V    +   +++ D VS  + E++ DDD  G ++D   DLG D +KQK + TDEMDYE+
Sbjct: 1316 DVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD---DLGSDAQKQKKQETDEMDYEE 1375

Query: 302  DSEEELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTT 361
            +SE+E N     +G E       E D  N+DT E+ K+ T E Q E ++  K     K  
Sbjct: 1376 NSEDETNEPSSISGVED-----PEMDSENEDT-EVSKEDTPEPQEESMEPQKEVKGVKNV 1435

Query: 362  KTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKF-TNEPHILLTQIAQRTAQKVSIQ 421
            K  +KKK+ K  F R   DR IFV  +G  FEVHFKF T++PHILL QIAQ+TAQKV IQ
Sbjct: 1436 KEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFATDDPHILLAQIAQQTAQKVYIQ 1495

Query: 422  SSGKIIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELD 481
            +SGKI RC    C + QVIYHG++ K R+ I  +EK+  PAL  +GVDF  LWE QD+LD
Sbjct: 1496 NSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLD 1555

Query: 482  ARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRP 541
             RY+YSN IH ML  +GVEAARETIIREI ++F SYGISV+IRHL LIADYMT SGGYRP
Sbjct: 1556 VRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRP 1615

Query: 542  MNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDL 601
            M+R+GGIA+S SPF RMTFETA +FIVQAA +GE DTLETPSARICLGLP   GTG FDL
Sbjct: 1616 MSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDL 1670

Query: 602  MQKIDV 603
            MQ++++
Sbjct: 1676 MQRVEL 1670

[Close]

BLAST of Carg01246 vs. ExPASy Swiss-Prot
Match: O35134 (DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-68
Identity = 185/542 (34.13%), Postives = 292/542 (53.87%), Query Frame = 0


Query: 65   LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMT 124
            LL+ K+  SL  PGE VG+LAAQSIGEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM 
Sbjct: 1202 LLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1261

Query: 125  ASQDIKTPIMTCPLRE-GYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSI 184
            AS +IKTP+M+ P+ +   ++   K L  +L ++ + ++++ +++        KR    +
Sbjct: 1262 ASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQV 1321

Query: 185  YKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDS 244
            Y+L  +F P     Q   +  ED+   +E  F + L ++I+ +    S    + +    +
Sbjct: 1322 YELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNKASAFRNVNS--RRA 1381

Query: 245  QSKGLSESDKVSSSEREENDDDDDVGNDLDV-AEDLGFDMK--KQKLRTTDEMDYEDDSE 304
              K L++++    S+REE  D+++ GN +D  AE+   D    K+K +  +E+DYE + E
Sbjct: 1382 TQKDLNDTEDSGRSQREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEE 1441

Query: 305  EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS 364
             E          E E +  +E +I  D     V      D+ E + + +  S  K  +  
Sbjct: 1442 GE---------EEEEEEVQEEGNIKGDG----VHQGHEPDEEEHLGLEEEESSQKPPRRH 1501

Query: 365  NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 424
            ++ + A++        R I    +   F   +++  E  +      +    K++   S  
Sbjct: 1502 SRPQGAEA------IKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSL 1561

Query: 425  IIRCQQITCKEGQVIYHGNDIK--VRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDAR 484
            +     ++     ++Y    I   +       + EK   L T G++   L++  + LD R
Sbjct: 1562 V-----VSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLR 1621

Query: 485  YIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMN 544
             +YSNDIHAM  TYG+EAA   I +EI+++F+ YGI+V+ RHL+L+ADYM   G Y+P+N
Sbjct: 1622 RLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLN 1681

Query: 545  RLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQ 601
            R  GI  S SP  +MTFET+ +F+ QA   G  D L++PSA + +G  VK GTG F+L Q
Sbjct: 1682 RF-GIQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1716

[Close]

BLAST of Carg01246 vs. ExPASy Swiss-Prot
Match: P91875 (DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster OX=7227 GN=RpI1 PE=1 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 4.3e-67
Identity = 201/583 (34.48%), Postives = 299/583 (51.29%), Query Frame = 0


Query: 34   PSVLQEKAEVIYNSLAK----------DKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGV 93
            P+V   K ++ Y S+++           + P L  K+    ++  K + SLA PGEPVG+
Sbjct: 1123 PTVAVYKQDLYYGSVSERTRKLITDYAKRKPAL--KETIADIMRVKTIKSLAAPGEPVGL 1182

Query: 94   LAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYS 153
            +AAQSIGEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM AS +IKTP M  P++ G  
Sbjct: 1183 IAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG-Q 1242

Query: 154  MDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVS 213
               A+ L   L  +T+A+++E + V+       +R     Y +  +F P E   +   V 
Sbjct: 1243 QHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSY--EYDMRFQFLPREVYKEDYGVR 1302

Query: 214  SEDLEEILEFVFVRELEDSIQNEMLLLSRISGI-----KNFVPDSQSKGLSESDKVSSSE 273
             + + + +   F ++L  +I  ++   SR + I     K          L   D+V  S+
Sbjct: 1303 PKHIIKYMHQTFFKQLIRAIL-KVSNASRTTKIVVIDDKKDADKDDDNDLDNGDEVGRSK 1362

Query: 274  REENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYED-DSEEELNVKERSAGFESEVD 333
             + NDDD    ND D A  +     K K R TDE DY+D D  EEL+             
Sbjct: 1363 AKANDDDSSDDNDDDDATGV-----KLKQRKTDEKDYDDPDDVEELH------------- 1422

Query: 334  QGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDR 393
                 D  +DD      +A  ED  E         KG+    ++   KA       D  +
Sbjct: 1423 -----DANDDD-----DEAEDEDDEE---------KGQDGNDNDGDDKAVERLLSNDMVK 1482

Query: 394  AIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYH 453
            A +   K NH     K       L  +  +     +  + +GK +   Q+   +  +IY 
Sbjct: 1483 A-YTYDKENHLWCQVKLN-----LSVRYQKPDLTSIIRELAGKSV-VHQVQHIKRAIIYK 1542

Query: 454  GNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAA 513
            GND                 L+T G++   +++    LD   +YSNDIHA+ +TYG+EAA
Sbjct: 1543 GND-------------DDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAA 1602

Query: 514  RETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSISPFSRMTFET 573
             + I++E+ N+F  YGI+V+ RHL+LIADYMT  G ++P++R  G+  S SP  +M+FE+
Sbjct: 1603 SQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSR-KGMEHSSSPLQQMSFES 1641

Query: 574  AARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI 601
            + +F+  AA  G  D L +PS+R+ +GLPV+ GTG+F+L+ KI
Sbjct: 1663 SLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

[Close]

BLAST of Carg01246 vs. ExPASy Swiss-Prot
Match: O54889 (DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr1a PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.6e-66
Identity = 183/542 (33.76%), Postives = 290/542 (53.51%), Query Frame = 0


Query: 65   LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMT 124
            LL+ K+  SL  PGE VG+LAAQSIGEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM 
Sbjct: 1202 LLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1261

Query: 125  ASQDIKTPIMTCPL-REGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSI 184
            AS +IKTP+M+ P+     ++   K L  +L ++ + ++++ +++        K+    +
Sbjct: 1262 ASANIKTPMMSVPVFNTKKALRRVKSLKKQLTRVCLGEVLQKVDIQESFCMGEKQNKFRV 1321

Query: 185  YKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDS 244
            Y+L  +F P     Q   +  ED+   +E  F + L ++I+ +    S    +      +
Sbjct: 1322 YELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVN--TRRA 1381

Query: 245  QSKGLSESDKVSSSEREENDDDDDVGNDLDV-AEDLGFDMK--KQKLRTTDEMDYEDDSE 304
              K L +++    + REE  D+++ GN +D  AE+   D    K+K +  +E+DYE  SE
Sbjct: 1382 TQKDLDDTEDSGRNRREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYE--SE 1441

Query: 305  EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS 364
            EE   +E     E E  +G+ A  T++            D+ E   + + +S+    + S
Sbjct: 1442 EEGEEEEEEDVQEEENIKGEGAHQTHE-----------PDEEEGSGLEEESSQNPPCRHS 1501

Query: 365  NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 424
              +         +  +R I    + + F   +++  E  +      +    K++   S  
Sbjct: 1502 RPQ-------GAEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSL 1561

Query: 425  IIRCQQITCKEGQVIYHGNDIK--VRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDAR 484
            +     ++     ++Y    I   +       + EK   L T G++   L++  + LD R
Sbjct: 1562 V-----VSLAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLR 1621

Query: 485  YIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMN 544
             +YSNDIHA+  TYG+EAA   I +EI+++F+ YGI+V+ RHL+L+ADYM   G Y+P+N
Sbjct: 1622 RLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLN 1681

Query: 545  RLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQ 601
            R  GI  S SP  +MTFET+ +F+ QA   G  D L++PSA + +G  VK GTG F+L Q
Sbjct: 1682 RF-GIQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1715

[Close]

BLAST of Carg01246 vs. ExPASy Swiss-Prot
Match: O95602 (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 4.8e-66
Identity = 180/545 (33.03%), Postives = 293/545 (53.76%), Query Frame = 0


Query: 65   LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMT 124
            LL+ K+  SL +PGE VG+LAAQSIGEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM 
Sbjct: 1195 LLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1254

Query: 125  ASQDIKTPIMTCP-LREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSI 184
            AS +IKTP+M+ P L    ++   K L  +L ++ + ++++ ++V      + K+    +
Sbjct: 1255 ASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQV 1314

Query: 185  YKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNF-VPD 244
            Y+L  +F P     Q   +  ED+   +E  F + L +SI+ +    ++ S  +N     
Sbjct: 1315 YQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKN---NKASAFRNVNTRR 1374

Query: 245  SQSKGLSESDKVSSSEREENDDDDDVGNDLDV-AEDLGFDMK--KQKLRTTDEMDYEDDS 304
            +  + L  + ++  S  E+  D+++ G+ +D  AE+   D    K+K +  +E+DYE + 
Sbjct: 1375 ATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEE 1434

Query: 305  EEELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKT 364
            EE           E E ++ D+ D+  +          +++Q E + +            
Sbjct: 1435 EE-----------EREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEEDPSLPALL 1494

Query: 365  SNKKKKAKSEFSR--KDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQS 424
            +  +K   S+  +  +  +R +    + + F   +++  E  +      +    K++   
Sbjct: 1495 TQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDM 1554

Query: 425  SGKIIRCQQITCKEGQVIYHGNDIK--VRKNIKPEEKEKVPALQTTGVDFKTLWELQDEL 484
            S  +     ++   G VIY    I   +       + EK   L T G++   L++  + L
Sbjct: 1555 SSLV-----VSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVL 1614

Query: 485  DARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYR 544
            D R +YSNDIHA+  TYG+EAA   I +EI+++F+ YGI+V+ RHL+L+ADYM   G Y+
Sbjct: 1615 DLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYK 1674

Query: 545  PMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFD 601
            P+NR  GI  + SP  +MTFET+ +F+ QA   G  D L +PSA + +G  V+ GTG F+
Sbjct: 1675 PLNRF-GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFE 1719

[Close]

BLAST of Carg01246 vs. ExPASy TrEMBL
Match: A0A6J1FEE5 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111444963 PE=3 SV=1)

HSP 1 Score: 1136.7 bits (2939), Expect = 0.0e+00
Identity = 589/595 (98.99%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS AKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSS+REENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
             SAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 PSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGND KVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1695

[Close]

BLAST of Carg01246 vs. ExPASy TrEMBL
Match: A0A6J1I5C4 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 PE=3 SV=1)

HSP 1 Score: 1134.8 bits (2934), Expect = 0.0e+00
Identity = 588/595 (98.82%), Postives = 590/595 (99.16%), Query Frame = 0


Query: 8    LFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDDFIRLLE 67
            L  NCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS AKDKAPGLGQKDDFIRLLE
Sbjct: 1101 LAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLE 1160

Query: 68   NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 127
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1161 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1220

Query: 128  DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 187
            DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE
Sbjct: 1221 DIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLE 1280

Query: 188  IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 247
            IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG
Sbjct: 1281 IRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKG 1340

Query: 248  LSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 307
            LSESDKVSSS+REENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE
Sbjct: 1341 LSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKE 1400

Query: 308  RSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAK 367
             SAGFESEVDQGDEADITNDDTMEIVKDATSEDQT IIDVSKSNSKGKTTKTSNKKKKAK
Sbjct: 1401 PSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTVIIDVSKSNSKGKTTKTSNKKKKAK 1460

Query: 368  SEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 427
            SEFSRKDYDRAIFV+AKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI
Sbjct: 1461 SEFSRKDYDRAIFVAAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQI 1520

Query: 428  TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 487
            TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA
Sbjct: 1521 TCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHA 1580

Query: 488  MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 547
            MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI
Sbjct: 1581 MLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSI 1640

Query: 548  SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 603
            SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV
Sbjct: 1641 SPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKIDV 1695

[Close]

BLAST of Carg01246 vs. ExPASy TrEMBL
Match: A0A6J1DJ24 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111021540 PE=3 SV=1)

HSP 1 Score: 1010.7 bits (2612), Expect = 2.5e-291
Identity = 517/602 (85.88%), Postives = 559/602 (92.86%), Query Frame = 0


Query: 2    IRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDD 61
            I  +  L  N +M+YQKSHHQ   +N YINELPS LQEKAEVIYNS +KDKAPGL QKDD
Sbjct: 1093 ITKFEALVANRDMLYQKSHHQLGKYNIYINELPSALQEKAEVIYNSFSKDKAPGLVQKDD 1152

Query: 62   FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 121
            F RLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1153 FFRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1212

Query: 122  LMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREIC 181
            LMTAS DIKTPIMTCPLR+GYSMD AKCLANKLKKITVADIIESMEVTVVPFS RKREIC
Sbjct: 1213 LMTASHDIKTPIMTCPLRDGYSMDYAKCLANKLKKITVADIIESMEVTVVPFSVRKREIC 1272

Query: 182  SIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVP 241
            SIYKLEI+FYPLE+NPQH HVSSEDLEEILEFVFVRELEDSIQNEM+LLSRI+GIKNFVP
Sbjct: 1273 SIYKLEIKFYPLENNPQHGHVSSEDLEEILEFVFVRELEDSIQNEMILLSRINGIKNFVP 1332

Query: 242  DSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEE 301
            DSQS+G SE D+VSSS+ EENDDDD+VGND+D AEDLGFDMKKQKLR TDEMDYEDDS+E
Sbjct: 1333 DSQSQGSSERDEVSSSQHEENDDDDNVGNDVDAAEDLGFDMKKQKLRATDEMDYEDDSDE 1392

Query: 302  ELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSN 361
            ELN K  SAGFESEVDQGDE +ITNDD M+I KD+TSE+QTEI DVSKSN KGKT KT+N
Sbjct: 1393 ELNAKAPSAGFESEVDQGDEVEITNDDIMDIAKDSTSENQTEITDVSKSNLKGKTPKTAN 1452

Query: 362  KKKK-AKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 421
            KKKK AK EFSRKDYDRAIFV+AKGNHFEVHFKF NEPHILLTQ+AQ+TAQKVSIQSSGK
Sbjct: 1453 KKKKRAKLEFSRKDYDRAIFVAAKGNHFEVHFKFANEPHILLTQVAQKTAQKVSIQSSGK 1512

Query: 422  IIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYI 481
            IIRCQQITCKEGQVIYHGN++K RK +K EEKEK+PA+QTTGVDF+ LWELQDELD RYI
Sbjct: 1513 IIRCQQITCKEGQVIYHGNNVKERKKMKLEEKEKIPAVQTTGVDFRMLWELQDELDVRYI 1572

Query: 482  YSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRL 541
            YSNDIHAML+TYGVEAARET++REI+NIFSSYGISVNIRHLTL+ADYMTHSGGYRPM+RL
Sbjct: 1573 YSNDIHAMLETYGVEAARETVMREIQNIFSSYGISVNIRHLTLVADYMTHSGGYRPMSRL 1632

Query: 542  GGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI 601
            GGIA+SISPFSRMTFETA++FIVQAA+HGE+D LETPSARICLGLP KMGTGSFDLMQKI
Sbjct: 1633 GGIAESISPFSRMTFETASKFIVQAAFHGEIDNLETPSARICLGLPAKMGTGSFDLMQKI 1692

Query: 602  DV 603
            +V
Sbjct: 1693 EV 1694

[Close]

BLAST of Carg01246 vs. ExPASy TrEMBL
Match: A0A0A0LF53 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 946.8 bits (2446), Expect = 4.4e-272
Identity = 487/601 (81.03%), Postives = 536/601 (89.18%), Query Frame = 0


Query: 2    IRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDD 61
            I  +  L  N +M+Y+ SHHQ   +N +INELPS L+EK E IYNSL+KDK PGL  K+D
Sbjct: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140

Query: 62   FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 121
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 122  LMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREIC 181
            LMTASQDIKTPIMTCPL+EGYSMD AK LANKLKKITVADIIESM VTVVPFSQRKREIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260

Query: 182  SIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVP 241
            SIYKL I FYPLE+N QH H+S EDLE  LE VF+ ELE  I+ EM+LLS+I+GIKNFVP
Sbjct: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320

Query: 242  DSQSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEE 301
            DSQSKG SE D+VSSS +EENDDDDD GNDLDVAEDLG DMKKQKL+  DEMDYEDDSE+
Sbjct: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380

Query: 302  ELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSN 361
            +LN KE S GFESEVDQGDEA+ITN+D +EIVKD+ SE+Q EI+DVSKS SK KTT+TS 
Sbjct: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440

Query: 362  KKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKI 421
            +KKK KSE  RK+ DR+IFV AK NHFEVHFKFTNEPH LL+QI QR AQKVSIQ SGKI
Sbjct: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500

Query: 422  IRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIY 481
            I+CQQITCKEGQVIYHGN++K RKN+KPEEKEK+PALQT+GVDFKTLWE+QDELD RYIY
Sbjct: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560

Query: 482  SNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLG 541
            SNDIHAMLQTYGVEAAR TIIREI+NIF+SYGISVNIRHL+L+ADYMTHSGGYRPM+RLG
Sbjct: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620

Query: 542  GIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKID 601
            GI+DSISPFSRMTFETA +FIVQAA HGEVD LETPS+RICLGLPVKMGTGSFDLMQKI+
Sbjct: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1680

Query: 602  V 603
            V
Sbjct: 1681 V 1681

[Close]

BLAST of Carg01246 vs. ExPASy TrEMBL
Match: A0A5A7TQ71 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00270 PE=3 SV=1)

HSP 1 Score: 940.3 bits (2429), Expect = 4.1e-270
Identity = 486/602 (80.73%), Postives = 541/602 (89.87%), Query Frame = 0


Query: 2    IRSYLFLFQNCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDKAPGLGQKDD 61
            I  +  L  N +M+YQKSHHQ   +N +INELPS L+EKAE IYNSL+KDK PGL  K+D
Sbjct: 1169 ITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPGLVVKED 1228

Query: 62   FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 121
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1229 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1288

Query: 122  LMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREIC 181
            LMTASQDIKTPIMTCPL+EGYSMD AK LANKLKKITVADIIESM VTVVPFSQRK EIC
Sbjct: 1289 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKLEIC 1348

Query: 182  SIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVP 241
            SIYKL I FYPL++N QH H+S EDLE  LE VF+ ELE  I+ EM+LLS+I+GIKNFVP
Sbjct: 1349 SIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKINGIKNFVP 1408

Query: 242  DSQSKGLSESDKVSSSEREE-NDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSE 301
            DSQSK  SE D+VS S++EE +DDDDD+GNDLDVAEDLG DMKKQKL+ TDEMDYEDDSE
Sbjct: 1409 DSQSKVSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMDYEDDSE 1468

Query: 302  EELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTS 361
            ++LN KE S GFESEVDQGDEA+ITN++ +EIVKD+ SE++ EI+D+SKS SK KTT+TS
Sbjct: 1469 DDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKEKTTETS 1528

Query: 362  NKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGK 421
             KKKK KSEF+RKD DR+IF  AK NHFEVHFKFTNEPHILL+QIAQR AQKVSIQ SGK
Sbjct: 1529 EKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVSIQRSGK 1588

Query: 422  IIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYI 481
            II+CQQITCKEGQVIYHGN++K RKN+KPEEKEK+PALQT+GVDFKTLWE+QDELD RYI
Sbjct: 1589 IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI 1648

Query: 482  YSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRL 541
            YSNDIHAMLQTYGVEAAR TIIREI+NIF+SYGISVNIRHL+L+ADYMTHSGGYRPM+RL
Sbjct: 1649 YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL 1708

Query: 542  GGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKI 601
            GGI+DSISPFSRMTFETA +FIVQAA HGEVD LETPS+RICLGLPVKMGTGSFDLMQ+I
Sbjct: 1709 GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQQI 1768

Query: 602  DV 603
            +V
Sbjct: 1769 EV 1769

[Close]

BLAST of Carg01246 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 589.0 bits (1517), Expect = 4.4e-168
Identity = 331/606 (54.62%), Postives = 431/606 (71.12%), Query Frame = 0


Query: 2    IRSYLFLFQNCEMIYQK-SHHQPDSFNQYINELPSVLQEKAEVIYNSLAKDK--APGLGQ 61
            I  +  L  N +M+ QK S       + YI++LP  L++ AE    ++  ++  A    +
Sbjct: 1076 IEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVR 1135

Query: 62   KDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRL 121
            +++ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1136 QEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1195

Query: 122  QEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKR 181
            QEILMTA+ +IKTPIMTCPL +G + +DA  + ++L+KITVADII+SME++VVP++  + 
Sbjct: 1196 QEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYEN 1255

Query: 182  EICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKN 241
            E+CSI+KL+I  Y  E  P+H  ++ ED EE +  VF+R+LED+I+  M +L RI GI N
Sbjct: 1256 EVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHN 1315

Query: 242  FVPDSQSKGLSES-DKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYED 301
             V    +   +++ D VS  + E++ DDD  G ++D   DLG D +KQK + TDEMDYE+
Sbjct: 1316 DVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD---DLGSDAQKQKKQETDEMDYEE 1375

Query: 302  DSEEELNVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTT 361
            +SE+E N     +G E       E D  N+DT E+ K+ T E Q E ++  K     K  
Sbjct: 1376 NSEDETNEPSSISGVED-----PEMDSENEDT-EVSKEDTPEPQEESMEPQKEVKGVKNV 1435

Query: 362  KTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKF-TNEPHILLTQIAQRTAQKVSIQ 421
            K  +KKK+ K  F R   DR IFV  +G  FEVHFKF T++PHILL QIAQ+TAQKV IQ
Sbjct: 1436 KEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFATDDPHILLAQIAQQTAQKVYIQ 1495

Query: 422  SSGKIIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELD 481
            +SGKI RC    C + QVIYHG++ K R+ I  +EK+  PAL  +GVDF  LWE QD+LD
Sbjct: 1496 NSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLD 1555

Query: 482  ARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRP 541
             RY+YSN IH ML  +GVEAARETIIREI ++F SYGISV+IRHL LIADYMT SGGYRP
Sbjct: 1556 VRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRP 1615

Query: 542  MNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDL 601
            M+R+GGIA+S SPF RMTFETA +FIVQAA +GE DTLETPSARICLGLP   GTG FDL
Sbjct: 1616 MSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDL 1670

Query: 602  MQKIDV 603
            MQ++++
Sbjct: 1676 MQRVEL 1670

[Close]

BLAST of Carg01246 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-26
Identity = 135/592 (22.80%), Postives = 231/592 (39.02%), Query Frame = 0


Query: 16   YQKSHHQPDSFNQYINELPSVLQEKA----EVIYNSLAKDKAPGLGQK--DDFIRLLENK 75
            + KS    D+F + + E  S+L  K+    +V+Y      KA G+  K  + F+++   +
Sbjct: 959  HDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLY------KASGVTDKQLEVFVKICVFR 1018

Query: 76   YLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDI 135
            Y     + G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI+  AS++I
Sbjct: 1019 YREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKNI 1078

Query: 136  KTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIR 195
             TP+++  L     +  A+ +  +++K T+  + ES+EV +   S   R I         
Sbjct: 1079 STPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILD------- 1138

Query: 196  FYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGLS 255
                               +I+E   +     S++N +L   RI                
Sbjct: 1139 ------------------NKIIEEACLSITPWSVKNSILKTPRI---------------- 1198

Query: 256  ESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKERS 315
                      + ND+D                     +R  D                  
Sbjct: 1199 ----------KLNDND---------------------IRVLD------------------ 1258

Query: 316  AGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSE 375
                                       T  D T ++D S++                   
Sbjct: 1259 ---------------------------TGLDITPVVDKSRA------------------- 1318

Query: 376  FSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITC 435
                             HF +H      P+I++  I  +T ++V +     + + +QI  
Sbjct: 1319 -----------------HFNLHNLKNVLPNIIVNGI--KTVERVVVAED--MDKSKQI-- 1362

Query: 436  KEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAML 495
                      D K +  +  E    +  + T G++ +T              SN++  + 
Sbjct: 1379 ----------DGKTKWKLFVEGTNLLAVMGTPGINGRT------------TTSNNVVEVS 1362

Query: 496  QTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSISP 555
            +T G+EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G    + R G      S 
Sbjct: 1439 KTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSV 1362

Query: 556  FSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKID 602
              + +FE     +  AA  G+VD +E  +  + +G+P+K+GTG   ++Q+ D
Sbjct: 1499 LMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTD 1362

[Close]

BLAST of Carg01246 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-25
Identity = 134/598 (22.41%), Postives = 227/598 (37.96%), Query Frame = 0


Query: 16   YQKSHHQPDSFNQYINELPSVLQEKA----EVIYNSLAKDKAPGLGQK--DDFIRLLENK 75
            + KS    D+F + + E  S+L  K+    +V+Y      KA G+  K  + F+++   +
Sbjct: 976  HDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLY------KASGVTDKQLEVFVKICVFR 1035

Query: 76   YLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDI 135
            Y     + G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI+  AS++I
Sbjct: 1036 YREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKNI 1095

Query: 136  KTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIR 195
             TP+++  L     +  A+ +  +++K T+  + ES+EV +   S   R I         
Sbjct: 1096 STPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILD------- 1155

Query: 196  FYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGLS 255
                               +I+E   +     S++N +L   RI                
Sbjct: 1156 ------------------NKIIEEACLSITPWSVKNSILKTPRI---------------- 1215

Query: 256  ESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKERS 315
                      + ND+D                     +R  D                  
Sbjct: 1216 ----------KLNDND---------------------IRVLD------------------ 1275

Query: 316  AGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSE 375
                                       T  D T ++D S++                   
Sbjct: 1276 ---------------------------TGLDITPVVDKSRA------------------- 1335

Query: 376  FSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQS------SGKIIR 435
                             HF +H      P+I++  I  +T ++V +        +  II 
Sbjct: 1336 -----------------HFNLHNLKNVLPNIIVNGI--KTVERVVVAEDMDKMLAKLIIP 1377

Query: 436  CQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSN 495
            C +  C                         +  + T G++ +T              SN
Sbjct: 1396 CPRWAC----------------------TNLLAVMGTPGINGRT------------TTSN 1377

Query: 496  DIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGI 555
            ++  + +T G+EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G    + R G  
Sbjct: 1456 NVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQ 1377

Query: 556  ADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKID 602
                S   + +FE     +  AA  G+VD +E  +  + +G+P+K+GTG   ++Q+ D
Sbjct: 1516 KMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTD 1377

[Close]

BLAST of Carg01246 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-21
Identity = 133/537 (24.77%), Postives = 215/537 (40.04%), Query Frame = 0


Query: 66   LENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTA 125
            +E+++L SL  PGE +G +AAQSIGEP+TQMTLNTFH+AG    NVTLG+PRL+EI+  A
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1128

Query: 126  SQDIKTPIMTCPL--REGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSI 185
             + IKTP ++  L      S + AK +   L+  T+  + ++ EV   P           
Sbjct: 1129 KR-IKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDP----------- 1188

Query: 186  YKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDS 245
                        +P  + +  ED E +  +  + + + S       L RI   +  + D 
Sbjct: 1189 ------------DPM-STIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVD- 1248

Query: 246  QSKGLSESDKVSSSEREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEEL 305
              K LS +D       E +DD   +                          + DD+ ++L
Sbjct: 1249 --KKLSMADIAEKINLEFDDDLTCI--------------------------FNDDNAQKL 1308

Query: 306  NVKERSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKK 365
             ++ R        D+G + ++         +D ++ED   +                   
Sbjct: 1309 ILRIRIMN-----DEGPKGEL---------QDESAEDDVFL------------------- 1368

Query: 366  KKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIR 425
            KK +S                                +LT++A R      I    K+  
Sbjct: 1369 KKIESN-------------------------------MLTEMALR-----GIPDINKVFI 1428

Query: 426  CQQITCKEGQVIYHGNDIKVRKNIKPEE----KEKVPALQTTGVDFKTLWELQDELDARY 485
             Q                 VRK+   EE      +   L T GV+   +    +++D + 
Sbjct: 1429 KQ-----------------VRKSRFDEEGGFKTSEEWMLDTEGVNLLAVM-CHEDVDPKR 1464

Query: 486  IYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNR 545
              SN +  +++  G+EA R  ++ E+R + S  G  VN RHL ++ D MT+ G    + R
Sbjct: 1489 TTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITR 1464

Query: 546  LGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDL 597
             G   +   P  R +FE     ++ AA + E D L   +  I LG    +GTG  +L
Sbjct: 1549 HGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1464

The following BLAST results are available for this feature:

BLAST of Carg01246 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027759.1	0.0e+00	100.00	DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022938891.1	0.0e+00	98.99	DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata]	[more]
XP_022971295.1	0.0e+00	98.82	DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima]	[more]
XP_023538901.1	0.0e+00	98.66	DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6596219.1	0.0e+00	99.16	DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Carg01246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVY0	6.2e-167	54.62	DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1...	[more]
O35134	3.9e-68	34.13	DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE...	[more]
P91875	4.3e-67	34.48	DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster OX=7227 GN...	[more]
O54889	3.6e-66	33.76	DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr...	[more]
O95602	4.8e-66	33.03	DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=...	[more]

BLAST of Carg01246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEE5	0.0e+00	98.99	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11144496...	[more]
A0A6J1I5C4	0.0e+00	98.82	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 ...	[more]
A0A6J1DJ24	2.5e-291	85.88	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110215...	[more]
A0A0A0LF53	4.4e-272	81.03	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 P...	[more]
A0A5A7TQ71	4.1e-270	80.73	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Carg01246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57660.1	4.4e-168	54.62	nuclear RNA polymerase A1	[more]
AT5G60040.1	1.3e-26	22.80	nuclear RNA polymerase C1	[more]
AT5G60040.2	1.4e-25	22.41	nuclear RNA polymerase C1	[more]
AT4G35800.1	2.1e-21	24.77	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 362..541 e-value: 1.8E-24 score: 86.6
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 52..235 e-value: 2.9E-29 score: 102.3
None	No IPR available	GENE3D	1.10.150.390		coord: 550..593 e-value: 7.9E-8 score: 34.1
None	No IPR available	GENE3D	3.30.70.2850		coord: 157..417 e-value: 7.0E-16 score: 60.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..342
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 10..594
None	No IPR available	CDD	cd02735	RNAP_I_Rpa1_C	coord: 69..597 e-value: 4.42749E-123 score: 363.821
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 59..600
IPR015699	DNA-directed RNA pol I, largest subunit	PANTHER	PTHR19376:SF11	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1	coord: 10..594

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01246-RA	Carg01246-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding