Carg01216 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01216
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 634249 .. 634812 (-)
RNA-Seq ExpressionCarg01216
SyntenyCarg01216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGTTTTTGTCATTGATCATTGAGTATCATTTCCAGGTGGTAGTGCAAAGGATCAAGTTTGATATTCTCTGATCCTTGTTGGTTGCTTAAATTCCATCCAACAAGATTGTTACAGTTCTTGCTATTTTATGAAATCCTGAATCAGATAAAGTTCCTAACATGTGTTTGGGTGAAAAAATGATGATGATAACTAGATGAGCAAGGTTTGGGCATCTTGACAATTTCCTTTCAACTGCAGAATAATGGAGTAAGATCACAAGTTACAGGGGAGATTACTGTGCTTGCACTAGTGCTTGTGCCTGTGCTGGCTGTATGTTAACTAAAATGTGTATTATCTCATGGACGAGGTTGAGCTTCAGGTCCTGGTGGTTTTGAAGAATTTAGAAGCGGCTGGAGAGCCTTAACCACAATTGTCATGTTTGGCCTGAAGTCAGCCTCGTACTGAACACACAAGGCTGCAACTGCTGCCAACTGAGAGGGATTCACATGGAAATTATAGTTGGAATAAGTATCCTATCCAATCCAAACCGAAACATCTACGACAATGATGAACACTAA

mRNA sequence

ATGTTGATGTTTTTGTCATTGATCATTGAGTATCATTTCCAGAATAATGGAGTAAGATCACAAGTTACAGGGGAGATTACTGTGCTTGCACTAGTGCTTGTGCCTGTGCTGGCTAAGCGGCTGGAGAGCCTTAACCACAATTGTCATGTTTGGCCTGAAGTCAGCCTCGTACTGAACACACAAGGCTGCAACTGCTGCCAACTGAGAGGGATTCACATGGAAATTATAGTTGGAATAAGTATCCTATCCAATCCAAACCGAAACATCTACGACAATGATGAACACTAA

Coding sequence (CDS)

ATGTTGATGTTTTTGTCATTGATCATTGAGTATCATTTCCAGAATAATGGAGTAAGATCACAAGTTACAGGGGAGATTACTGTGCTTGCACTAGTGCTTGTGCCTGTGCTGGCTAAGCGGCTGGAGAGCCTTAACCACAATTGTCATGTTTGGCCTGAAGTCAGCCTCGTACTGAACACACAAGGCTGCAACTGCTGCCAACTGAGAGGGATTCACATGGAAATTATAGTTGGAATAAGTATCCTATCCAATCCAAACCGAAACATCTACGACAATGATGAACACTAA

Protein sequence

MLMFLSLIIEYHFQNNGVRSQVTGEITVLALVLVPVLAKRLESLNHNCHVWPEVSLVLNTQGCNCCQLRGIHMEIIVGISILSNPNRNIYDNDEH
Homology
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BLAST of Carg01216 vs. NCBI nr
Match: KAG7027788.1 (hypothetical protein SDJN02_08965, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MLMFLSLIIEYHFQNNGVRSQVTGEITVLALVLVPVLAKRLESLNHNCHVWPEVSLVLNT 60
          MLMFLSLIIEYHFQNNGVRSQVTGEITVLALVLVPVLAKRLESLNHNCHVWPEVSLVLNT
Sbjct: 1  MLMFLSLIIEYHFQNNGVRSQVTGEITVLALVLVPVLAKRLESLNHNCHVWPEVSLVLNT 60

Query: 61 QGCNCCQLRGIHMEIIVGISILSNPNRNIYDNDEH 96
          QGCNCCQLRGIHMEIIVGISILSNPNRNIYDNDEH
Sbjct: 61 QGCNCCQLRGIHMEIIVGISILSNPNRNIYDNDEH 95

The following BLAST results are available for this feature:
BLAST of Carg01216 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027788.14.9e-47100.00hypothetical protein SDJN02_08965, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01216 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01216-RACarg01216-RAmRNA