Carg01214 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01214
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 635998 .. 637487 (-)
RNA-Seq ExpressionCarg01214
SyntenyCarg01214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGCAGACGGAGATTCCGACCACCGTGAGGCTGTCGGAGTATCGGAAGGAGGAGAAAAGGGGGATCGTGGCCATCGCCAGAATTGGGAGGAAAGATCAAAAAATTGGTGTAGAGAGTTGGATTGGATCTAAAGGGGAAATTGTGTTTGAATCTAAATTATGTGATTTCAAACAAAATTATCAACTTCGATCAATTATGAGGGAAAAGAACGGCCACACTCATTCTCTTACAAATATTTATATATATATATACGGCTAAGATTCATGTTCAAATCTAGTTGACATTTTTTACATTTTTTCTTCTTTCCCACACATAAAATTATCGACTTCCATCAATTATGAGCTAGCACAATGTTCAGTGTCTTGTCTATGGCACCATTTGTGATGATCAAAATTCATCGTTCAGTGTCTTGCCTCTGGCAATTATGAGCTGCCACACCGTTCGGTGTTTGCCTCTAGCACCATTTTGTAATACTCCAAGCTCACTGTCTCGTATCTTGCCTCTGACACCATTTGTAATGACTTAAGTTCACCACTAATAGATATTGTTCGCTTTGGCCCGTTACATTATGCTATCAACCTTCTCAAATAGAATAATAAAATAAGAATATTTTTTAAAAAATATTAGGGTCTAATTTGATAAAATTAAAAGTTGTAGGGCAAAAATGTAAATAAGACTTCTTGTTTTGGATCTTTGGGCCGAAGCTCGTAACGAGGGCTTCCAAAATATTCAACTCTCTCTTATCTGTTAAGTTGGAAACAAAAGCTCTAGTCCACTATCGGTGCCGGAGAAGGTGGCCAAGCTCTGCAGTGCGTCGGCTCCTCGTCGGAAACTTGAGGTGCGTCGGCCACGTTCTATATCTAGCTGTTTTTCAAAGCTCTGTAAATGTTTCGGCAGCATTGCCTTTGAGTTTCGGTCAATCAAGGAGTTTTTGTTGTGTTCTTTCTCGTGTTTATGTAATGCTTTTATCGATAGCTTAATGGTTTTTTCTTTTGACGTTTATGAAGTTCAGATTTTCTGGAGTTTTAAGCCTAAAACCTAGGGCTAAGAAATTTGCAATTTGAAATGCTTTCGACATTTTTCTGAGAGTAAAGTAGCGTTAAGTTTGTTCTTGCATCTTCATAATAGTACAATTTCCTGATGTTTACTAATGGTGAATTTGAACTTCCTTTGAGTTATCTTTAAGTGGAGCACGTTGTCCAAAATGTTCAGGTGTTGCTTGCTCCCCTAAATGCTTAATAGATTTTAGAAGTTACAAAACCTATCACTTTTAATGTTGTCAAAGAGATTGGTTTGAAAGGTGATACCTCTAAAGCTTTGAGAATGACCTATTCTGGGCGGAGCTTGCTAACTGTGCTCTCACAGGTGTGGAATATGGGGAGCAAATTGCTATAGAAGTAGTACTGACGGAGGAAGAAATTGTAGCATCATTGCAATTCACTGCAATTACGAACAACCCGAGACGATTCCCGTTTGCCTTCTAG

mRNA sequence

ATGGCGGTGCAGACGGAGATTCCGACCACCGTGAGGCTGTCGGAGTATCGGAAGGAGGAGAAAAGGGGGATCGTGGCCATCGCCAGAATTGGGAGGAAAGATCAAAAAATTGGTGTAGAGAGTTGGATTGGATCTAAAGGGGAAATTTTGGAAACAAAAGCTCTAGTCCACTATCGGTGCCGGAGAAGGTGGCCAAGCTCTGCAGTGCGTCGGCTCCTCGTCGGAAACTTGAGCTTTGAGAATGACCTATTCTGGGCGGAGCTTGCTAACTGTGCTCTCACAGGTGTGGAATATGGGGAGCAAATTGCTATAGAAGTAGTACTGACGGAGGAAGAAATTGTAGCATCATTGCAATTCACTGCAATTACGAACAACCCGAGACGATTCCCGTTTGCCTTCTAG

Coding sequence (CDS)

ATGGCGGTGCAGACGGAGATTCCGACCACCGTGAGGCTGTCGGAGTATCGGAAGGAGGAGAAAAGGGGGATCGTGGCCATCGCCAGAATTGGGAGGAAAGATCAAAAAATTGGTGTAGAGAGTTGGATTGGATCTAAAGGGGAAATTTTGGAAACAAAAGCTCTAGTCCACTATCGGTGCCGGAGAAGGTGGCCAAGCTCTGCAGTGCGTCGGCTCCTCGTCGGAAACTTGAGCTTTGAGAATGACCTATTCTGGGCGGAGCTTGCTAACTGTGCTCTCACAGGTGTGGAATATGGGGAGCAAATTGCTATAGAAGTAGTACTGACGGAGGAAGAAATTGTAGCATCATTGCAATTCACTGCAATTACGAACAACCCGAGACGATTCCCGTTTGCCTTCTAG

Protein sequence

MAVQTEIPTTVRLSEYRKEEKRGIVAIARIGRKDQKIGVESWIGSKGEILETKALVHYRCRRRWPSSAVRRLLVGNLSFENDLFWAELANCALTGVEYGEQIAIEVVLTEEEIVASLQFTAITNNPRRFPFAF
Homology
[Close]
BLAST of Carg01214 vs. NCBI nr
Match: KAG7027790.1 (hypothetical protein SDJN02_08967, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MAVQTEIPTTVRLSEYRKEEKRGIVAIARIGRKDQKIGVESWIGSKGEILETKALVHYRC 60
           MAVQTEIPTTVRLSEYRKEEKRGIVAIARIGRKDQKIGVESWIGSKGEILETKALVHYRC
Sbjct: 1   MAVQTEIPTTVRLSEYRKEEKRGIVAIARIGRKDQKIGVESWIGSKGEILETKALVHYRC 60

Query: 61  RRRWPSSAVRRLLVGNLSFENDLFWAELANCALTGVEYGEQIAIEVVLTEEEIVASLQFT 120
           RRRWPSSAVRRLLVGNLSFENDLFWAELANCALTGVEYGEQIAIEVVLTEEEIVASLQFT
Sbjct: 61  RRRWPSSAVRRLLVGNLSFENDLFWAELANCALTGVEYGEQIAIEVVLTEEEIVASLQFT 120

Query: 121 AITNNPRRFPFAF 134
           AITNNPRRFPFAF
Sbjct: 121 AITNNPRRFPFAF 133

The following BLAST results are available for this feature:
BLAST of Carg01214 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027790.12.7e-67100.00hypothetical protein SDJN02_08967, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01214 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01214 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01214 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01214-RACarg01214-RAmRNA