Carg01178 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01178
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	High mobility group protein
Location	Carg_Chr06: 819217 .. 821927 (-)
RNA-Seq Expression	Carg01178
Synteny	Carg01178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGATCTCGCGATTTCTCTCTTTCTCTCTCTAGCGAAACCGACTCCCCCCCTTCATATCCCTCTCGCTCTTTCTCTTCAAAGCCTTTCCACATAACAGTGAAGCCAAATCCCTAACGCCAAACACGAACCAAGAAAAGCTAAGTCTCCTTATCCTCCTCCCAAACCCTAGAGTTTTACAGGTAAACTCCTAATTTCTCCGCCGCTTGCAAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCGTCTCTCCTACGGTTTTTTAACCTATTTTTCGCTTGTTTTTCTGCAGGATTCGTCATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTGAGTTCATAGTTAACTGAAGCCTTTTTTTTTTTTTTTTTTAATTTTAATTTTTATTTTTATAATCTGTTTTTTGTTTTGCTTGTGTGTTTTGGAGCAGGCGGTTTGGTCTTATGTTTCCGTAATTTTAATCTTTGGTTCTGCTTTCGGTTGATTTATATGTGTTTTGTTACTTCAATTTTGTTAGGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGTATTTCTCTCTCTCTAGCTTACTGATTTTGTATATGTATTTTGAGATCCGTGTTTTTAACGTCTAGTAGAGGTCACTTTTTTGCCGAATTTTTACTAGTTCGATTTTGTTGTTGATAAATATGAAGGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGTAAGTGATTTTAGATCTGCGTCCTTTTTTATTTCATTTCTTTTAGGGAATTCATAGATTTTTAAACGCGTTCTCGTTTGTGCAAATGAACAGGTTGGGAAGGCTGGCGGTGATAAATGGAGATCATTGTCAGACGCCGTAAGTTATTGGAAATCGATATTGCTACTCCCTTTGTTCTGTGATAATTGCATCAAATTACATGTTCCTGATGCGTTCTCGTTTGATTTTTTCAGGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACCGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGTGAACTCTCTTACCCCAACTTTTTTGTCCAGAGTACTTGCCTGCTCTTGTTTATCTTAATCATCCGCTACAATTATTCCTTTAGGCGGAGGGAAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAACGACAACGAAGAAGATGACGATGAGAGTGGAGAGGTTTGTAAACAAGTTATGTTTGAAGTATGCAATTCCAATAGTCGTACATGTCTCATAATCCTTTGTTTTGACCTTTGCAGGAGGATGATGATGAGTAACTGTGTAACTGTATGGGATGAGGAATGTGGTTGAAGGATAAGCGATTTAACTTCTCATAGCTTGGAGCATAAAGACTCTGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTTATTTTTCTCTTTTTTTTTTGGGTAGTTAGCATAGATGGGAGAAAAAGAAAAAAAAATCAAAACAAAGAATGCTCTGTTCAATGTTAGATTCCTTAAGTTGACATGGTTCTGTATTTGAAAGGAAAATCTGTTAGTAATTCACAACCATTCAGTTTTAGTTCATTAGTCCACTGATCTTGGTTTTTTGATTTTCGTTCTGCCATTTCTTATTTTGATTCCCGTTGACCCATCTTCTTGCAATTCACCATGAAAGTGCGTGAGTTCATGTCTTGAGCTTATCTGCTTTGTTGGGTCGGTTGTCTTTTTGATTTGAAAGTTTGTTAGATTCTCTCTTGGTATTTTTGAGGATGGAATGATGGTGTTTGTTGACTTCACCCTTAGTTTTTAACGTTGAAAGCTTACTTTTGACCATTCGTTTCCTCTTTTGGTTTCTCACCTGAGTTTGAAAATGGCTCAAATTGTGAGCGTCTTCATTATAGTTTGTTTGTGGCTTCTGGGGAGAAGTCAATTTATGGATCACAGTTTGTTCAGATGAGTGTTCTGAGTCGTTTGTTGATTTGTGAACAAATTCGAGGTTCGAATTTTTTGTTATGGTAAACAAATTTGTGTTCTTTGTGTTCTTTGTTATGATGAATAAGTTTGGTTAAATTGGTTAAGATGGGAGTGATTGAATTAGGTTGGAGAATGGGTGTAATGATTTGTTGTTGTTAGTCAATTTATGTTTTGATTACTTGAAGACAGACTACGAACTTATTATAGGTATAGAGCCACCAAACGTGGTGCTCTTCTGTTGCTATGCATTCAAGAGTCGGATTCTTTGCACAAATCACCATTAATAGGTAGTTGGTGGGTGATTTAATTAATAACAATGTGTAAGATGAGTGTTAAAGCTATCCCACCAAGTTAGTTCATAATTGATTTGTTGCATTACATTTGTAGAATTTGTACATTCCTAGATGTTATATGTTTGTCAATTTACGTTCTTTAACACGTGTATTTGCAAGTTTCGGTCATTTATGATAAAATATTCAAAAGATAATAGAGTATGCGCGATCATTAGGTCTAACTAATCCTGGATAAATATAAGCTTAACAACTTCTTCATTTATTAAACATTTTTCCATTTATTAAACAAAATTTTAGGTATTTTATTTTCAATTGATAAAAA

mRNA sequence

AATTGATCTCGCGATTTCTCTCTTTCTCTCTCTAGCGAAACCGACTCCCCCCCTTCATATCCCTCTCGCTCTTTCTCTTCAAAGCCTTTCCACATAACAGTGAAGCCAAATCCCTAACGCCAAACACGAACCAAGAAAAGCTAAGTCTCCTTATCCTCCTCCCAAACCCTAGAGTTTTACAGGATTCGTCATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGTTGGGAAGGCTGGCGGTGATAAATGGAGATCATTGTCAGACGCCGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACCGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGCGGAGGGAAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAACGACAACGAAGAAGATGACGATGAGAGTGGAGAGGAGGATGATGATGAGTAACTGTGTAACTGTATGGGATGAGGAATGTGGTTGAAGGATAAGCGATTTAACTTCTCATAGCTTGGAGCATAAAGACTCTGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTTATTTTTCTCTTTTTTTTTTGGGTAGTTAGCATAGATGGGAGAAAAAGAAAAAAAAATCAAAACAAAGAATGCTCTGTTCAATGTTAGATTCCTTAAGTTGACATGGTTCTGTATTTGAAAGGAAAATCTGTTAGTAATTCACAACCATTCAGTTTTAGTTCATTAGTCCACTGATCTTGGTTTTTTGATTTTCGTTCTGCCATTTCTTATTTTGATTCCCGTTGACCCATCTTCTTGCAATTCACCATGAAAGTGCGTGAGTTCATGTCTTGAGCTTATCTGCTTTGTTGGGTCGGTTGTCTTTTTGATTTGAAAGTTTGTTAGATTCTCTCTTGGTATTTTTGAGGATGGAATGATGGTGTTTGTTGACTTCACCCTTAGTTTTTAACGTTGAAAGCTTACTTTTGACCATTCGTTTCCTCTTTTGGTTTCTCACCTGAGTTTGAAAATGGCTCAAATTGTGAGCGTCTTCATTATAGTTTGTTTGTGGCTTCTGGGGAGAAGTCAATTTATGGATCACAGTTTGTTCAGATGAGTGTTCTGAGTCGTTTGTTGATTTGTGAACAAATTCGAGGTTCGAATTTTTTGTTATGGTAAACAAATTTGTGTTCTTTGTGTTCTTTGTTATGATGAATAAGTTTGGTTAAATTGGTTAAGATGGGAGTGATTGAATTAGGTTGGAGAATGGGTGTAATGATTTGTTGTTGTTAGTCAATTTATGTTTTGATTACTTGAAGACAGACTACGAACTTATTATAGGTATAGAGCCACCAAACGTGGTGCTCTTCTGTTGCTATGCATTCAAGAGTCGGATTCTTTGCACAAATCACCATTAATAGGTAGTTGGTGGGTGATTTAATTAATAACAATGTGTAAGATGAGTGTTAAAGCTATCCCACCAAGTTAGTTCATAATTGATTTGTTGCATTACATTTGTAGAATTTGTACATTCCTAGATGTTATATGTTTGTCAATTTACGTTCTTTAACACGTGTATTTGCAAGTTTCGGTCATTTATGATAAAATATTCAAAAGATAATAGAGTATGCGCGATCATTAGGTCTAACTAATCCTGGATAAATATAAGCTTAACAACTTCTTCATTTATTAAACATTTTTCCATTTATTAAACAAAATTTTAGGTATTTTATTTTCAATTGATAAAAA

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGTTGGGAAGGCTGGCGGTGATAAATGGAGATCATTGTCAGACGCCGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACCGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGCGGAGGGAAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAACGACAACGAAGAAGATGACGATGAGAGTGGAGAGGAGGATGATGATGAGTAA

Protein sequence

MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEEESDKSKSEVNDNEEDDDESGEEDDDE

Homology

[Close]

BLAST of Carg01178 vs. NCBI nr
Match: KAG6596275.1 (hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 51  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 110

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE
Sbjct: 111 PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 170

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 171 ESDKSKSEVNDNEEDDDESGEEDDDE 196

[Close]

BLAST of Carg01178 vs. NCBI nr
Match: XP_022947889.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7027826.1 hypothetical protein SDJN02_09003 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. NCBI nr
Match: XP_022971560.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 4.4e-63
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA+EE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGADEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 132/146 (90.41%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVND++EDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.9 bits (590), Expect = 3.6e-57
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+K AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 12  MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 71

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKW+SLS+AEKAPYVSKAEK+K EY KTMQAYNK++AEG NGAEEE
Sbjct: 72  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 131

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVND +EDDDESGEEDDDE
Sbjct: 132 ESDKSKSEVNDEDEDDDESGEEDDDE 157

[Close]

BLAST of Carg01178 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-39
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGA-SKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKA   K+D+KL  K   A +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEE 120
           HPNNKSVA VGKAGGDKW+ L+ AEKAP++SKAEK+K EY K +QAYNKK A G+  AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEE 120

Query: 121 EESDKSKSEVNDNEEDDDESGEEDDDE 147
           EESDKS+SEVND++ED D SGE+D ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of Carg01178 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-39
Identity = 98/152 (64.47%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+AD KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGS 120
            + KEHP NK+V+AVGKA G KW+++SDAEKAPYV+K+EK+K EY K M+AYNKK AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDNEEDDDESGEEDDDE 147
            G +EEES+KS SEVND ++D++ SGEE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of Carg01178 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-34
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVAAVGKAGG+KW+SLSD+EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Carg01178 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-34
Identity = 98/152 (64.47%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 60
           MKGGKSK   KKA++KL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEG 120
           +QYKK+HPNNKSVAAVGKA G++W+SLS+ EKAPYV +A KKK EY  T+QAYNKKL EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 SNGAEEEESDKSKSEVNDNEEDDDESGEEDDD 146
            +  +EE SDKSKSEVND +ED+++  +EDDD
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

[Close]

BLAST of Carg01178 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-33
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVA VGKA GDKW+SLSD+EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Carg01178 vs. ExPASy TrEMBL
Match: A0A6J1G881 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451359 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.5e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. ExPASy TrEMBL
Match: A0A6J1I630 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470239 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA+EE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGADEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+K AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKW+SLS+AEKAPYVSKAEK+K EY KTMQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVND +EDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. ExPASy TrEMBL
Match: A0A6J1E6E0 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+K AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKW+SLS+AEKAPYVSKAEK+K EY KTMQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVND +EDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Carg01178 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 129/146 (88.36%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKK D+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKSKSEVND++EDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

[Close]

BLAST of Carg01178 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-35
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVAAVGKAGG+KW+SLSD+EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Carg01178 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-35
Identity = 92/145 (63.45%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVA VGKA GDKW+SLSD+EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDD 146
           ESDKS SEVND ++ +D S EEDDD
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Carg01178 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-35
Identity = 93/146 (63.70%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVA VGKA GDKW+SLSD+EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKS SEVND  EDD E G E+DD+
Sbjct: 121 ESDKSVSEVND--EDDAEDGSEEDDD 142

[Close]

BLAST of Carg01178 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-35
Identity = 94/143 (65.73%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVAAVGKAGG+KW+SLSD+EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEED 144
           ESDKS SEVND  EDD E G E+
Sbjct: 121 ESDKSVSEVND--EDDAEDGSEE 136

[Close]

BLAST of Carg01178 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120
           P NKSVA VGKA GDKW+SLSD+EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 147
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

The following BLAST results are available for this feature:

BLAST of Carg01178 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596275.1	2.0e-63	100.00	hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947889.1	2.0e-63	100.00	HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cu...	[more]
XP_022971560.1	4.4e-63	99.32	HMG1/2-like protein [Cucurbita maxima]	[more]
XP_038904814.1	2.5e-58	90.41	HMG1/2-like protein [Benincasa hispida]	[more]
KAG6577813.1	3.6e-57	90.41	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg01178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	6.0e-39	68.71	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	6.0e-39	64.47	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	4.4e-34	64.38	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	4.4e-34	64.47	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
O49596	1.7e-33	62.33	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Carg01178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G881	9.5e-64	100.00	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451359 PE=3 SV=1	[more]
A0A6J1I630	2.1e-63	99.32	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470239 PE=3 SV=1	[more]
A0A6J1KZ83	1.7e-57	90.41	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]
A0A6J1E6E0	1.7e-57	90.41	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1	[more]
Q4ZH67	2.3e-57	88.36	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of Carg01178 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	3.1e-35	64.38	high mobility group B3	[more]
AT1G20693.3	3.1e-35	63.45	high mobility group B2	[more]
AT1G20693.2	7.0e-35	63.70	high mobility group B2	[more]
AT1G20696.3	7.0e-35	65.73	high mobility group B3	[more]
AT1G20693.1	1.2e-34	62.33	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..129
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 38..104 e-value: 8.97399E-16 score: 65.3417
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..108 e-value: 2.7E-26 score: 103.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..107 e-value: 2.7E-23 score: 82.2
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 38..107 score: 20.434719
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 33..110 e-value: 8.7E-27 score: 95.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 30..111
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01178-RA	Carg01178-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0048767	root hair elongation
biological_process	GO:0071816	tail-anchored membrane protein insertion into ER membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0043529	GET complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0030527	structural constituent of chromatin