Carg01177 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01177
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Location	Carg_Chr06: 822436 .. 826215 (+)
RNA-Seq Expression	Carg01177
Synteny	Carg01177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATTTACGGTGGCGCCAAAGAGATCCTCCGGAAATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGGTTCGTCTTTTCCTTGATTTTCTTTTTTCCGTCCGAATTCTTTTCATGTTTGTATAATCTGTCGTTCTTACGTTTCAACCTTAAACTTGTCGTTAATAGTTTAATTTTGAGCTTTACCTCAAATTTCGGACTGTAGTGCGTTTCAGTTTTTCGTTGACAAACTTCAGAATGCAATATAGCCAACTGAGCTTCATTAAGTTCACGATATTGGATTGGAGACGTGGCGATTTGATGATTAGTTTAACGACGTGATGGAATCAATCTGGAGATCTGTTGATATTTTCATTCTTAATATCTAAGAATTTGCATTGTTATAGTTGTTGTCCGTCCAATCTTGTCAACGTGTTTGTTTTGACACAATCGTGTTTCAATCATGTATGTAATGTTCAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAGTACGTAATTTCTCTAGCTCGGTTCAAGGTTAAAAGTGCATAATTCGGTTCAAATAACTCATCCTGTACGATTGGTTATAATTCTTATGACTATCTTGGGGATCATGTTCACTTGCTTTTTCGTTCGTGTAGACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTGTGAGACTAATTAATTGATCCCCAAAATCTCATATCTTCCTTCAATTTACTTTTTCTGTTGTTTTTTTTTTTTTTTTTTTACTGGTGCGTTGTCAAAAGAATATTGTGAAATGCTTTATAAAACCTCTTATCGATAACCGGTAGGCAAACAATTTTGCTCTTGTAGTATGGTAAGGTTTGTTATATGAATCATCGATGCACAAGCAGTTCTTGAAGATATTGCTTGAAGTATTGACTGCTATGTGATATAGTATTCTCAGGATTTGGAGCTTAAGCAACCATTTAGCTATTGACCATTGAAAAGAATGGTTCTCAAATTTAAGAAACCATGGTTTATAGGCTCTAAACTAACAGTAACACGGCTGTGTATGCTGGTAAATGTGATTGCCACTGCTTCCAATTGAACTGGTTATTTATGGATGCAAATTCATCCCAGACGGTGCTCATACTGCAAGTCATGATTTCGTATTATGAATTATGGTCCTATGAATTGGGTGGAGTCCCTTGAATGACCTCGGATCTGTAGTATTCTTCTGCATGGGTGGGAACCGAAGAAATTTTATGAATGTCATAGCAAGTTGAAAGCAACTTCTCATTGGTAAAATTGGTCTTATTCTGGGAATCATGTTGAACGTAGGCATCAGCCCAAGCAAATTGGAGAATTTGATCTGGTCTATTGTGAAGTATTAAAAGCACTTCGTGATTGAAGTGTTGGCATCCAACTAATACAGGATTTGAGTTTGACGTAGATTAACTCATGTCAGTATGTTATGACATGCTTTTTATCCCTCGAATCTAACATCGCCCAAAATGGTTCCTGAAATATTGTATGTAGTTGTAGCTTTTGACTGCCATGTTTTCATGTTGGTGTCACGTTGTGTGTTTATGTATCTATTTCTTTGGTTACATTAATTCCCTTTTTTGGCCCTTATTAGATACCATTTTACAGTTACTTGTGAAGCACTGATAATATATGGGATTTACCAAGGTTATCTGTTTTCAATAATTTGTTTCAAGTTTTCCAACTAGCGAGAGTAATGTTTCGTGAACTTGTATTTTTCTTTTGTCTAAAATTCAATATCACTCAAAATGCATCTTGAAGATAAATTGTTATAAAAGAACAGTAAAATAGCCATATTTATCAAGATAGCGTAGCCTTGACTTCTGTTCATTTTATTTCAGTCGTTTTCTGCCATTAATTGCTTCCCATCCCTTCAGTATTACTTAATAAGATGCTTCAGATTACACCTTAGATTCTATTTGAATGACATTGCTTCCAGATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTATTATATTATTACTGAATTTTCTAATAAGTGTGTGTTCATATGTTGGATGTTTTCTTAAGTAAATATCTTGTGGTCGTGTAGGTTTTGATATATATTGTTCTCGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGTAATCACTCTCACCGCCAGCAGGATTTCTGTAGAACAATTATTATAGAGAAATGTCATTTCATTTTAAATTTTAACTATTACTTCTTGATACTCTCCCTTCTGCAGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTAGAACAATAATCACTTCTCAATTACCTGCAAATAACTCTTAGATCATTATGCGTTTCTTTTATCCCTTGAGAATAACATACCTGATACCATCACTAACACCCCCCCCCCCCCCCTCCCTCCCCCTCCCCCCTCCCCCCTCTTTCGAAACAAGATGTTTATATGGTTACCGTATCTGGTTTATGAAGGAAATGGTTTTAGGATAGAATTAGTAATGTGATTAGGGTCTTAAGTACATAGTAGCACTTAGCTAAAGGAGTTGTTTTGAGGGTTTGTTACAAATAGAGTGAGTGAGAATGGTTAAAGGTAGGCAGTCGTTTAGTAGAATTTAGGCTTAAGTTAGTATGCTCGAGGTTGAACGCTCCAACTACCTCAAATACTTGGGGAGTTATATTGTAATTCCGTTATCTTTTTTCTTTCTATATATCTAGGTTCTATCGGCTAGCCACAATCACGTCTGCACGTAATGAGAATATATGAGCATATGATGATTCTTAGCTCTTCTCAATGATGAACTGCAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAAAAAAGTAATTGAAGGTAAAATGTGATGTTGATGATCACATGCTCTGTAAATTATTTGGCAAGCGCGATGTTTTCCTAAATTTCAATGCACAGGGAGGCTGGAGAAGTTTATACAGCCCCCACCACTTTTTCTTTTTATGTTCAAATGAGCTTCATCATTGTCGTTTTTTCCCCTTTTTTTCTCTCCCATATATTCCATTCATTCTTTTTTTTGGTGGACTCTTGCTCTTAGGTATCGTTTACATGTTTTTTCGTTACTTCATAGAATTACGATATTCGATATATAGCTTGGTTGCATATGCACAGAGTAAGGGGTGATTTGTTTGCATTTGTATCTTTTCGGGATGAAAATATTGAATATGTAGGATCCCGTTTGATAACGATTTTGTTTTCCGTTTCTTGTGAGTATTTTTTGTAACTGGTTTTGTTTCTCGGGAAATATTTCTTAGATTAGTTTATAATATGTGATGATACCTTTTCTTGGTATACTAAAAGTTCAAACTTCCTTTACCAAAGTTGGTAATGTCAATGTTGTAAACTGCCATAGGAGGACAATGGTTTTTGGTTATATGAAAATAAAGTAATTATGAAATTTCCATTTATTAACACACTTACCAATTTTAAACAACTTTTGAAAATCTCAATCGCTAACCGCTTTTGAAAATGTTATTGGAAAATGTAAAAAAGGGAATGCATA

mRNA sequence

TTAATTTACGGTGGCGCCAAAGAGATCCTCCGGAAATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTCGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAAAAAAGTAATTGAAGGTAAAATGTGATGTTGATGATCACATGCTCTGTAAATTATTTGGCAAGCGCGATGTTTTCCTAAATTTCAATGCACAGGGAGGCTGGAGAAGTTTATACAGCCCCCACCACTTTTTCTTTTTATGTTCAAATGAGCTTCATCATTGTCGTTTTTTCCCCTTTTTTTCTCTCCCATATATTCCATTCATTCTTTTTTTTGGTGGACTCTTGCTCTTAGGTATCGTTTACATGTTTTTTCGTTACTTCATAGAATTACGATATTCGATATATAGCTTGGTTGCATATGCACAGAGTAAGGGGTGATTTGTTTGCATTTGTATCTTTTCGGGATGAAAATATTGAATATGTAGGATCCCGTTTGATAACGATTTTGTTTTCCGTTTCTTGTGAGTATTTTTTGTAACTGGTTTTGTTTCTCGGGAAATATTTCTTAGATTAGTTTATAATATGTGATGATACCTTTTCTTGGTATACTAAAAGTTCAAACTTCCTTTACCAAAGTTGGTAATGTCAATGTTGTAAACTGCCATAGGAGGACAATGGTTTTTGGTTATATGAAAATAAAGTAATTATGAAATTTCCATTTATTAACACACTTACCAATTTTAAACAACTTTTGAAAATCTCAATCGCTAACCGCTTTTGAAAATGTTATTGGAAAATGTAAAAAAGGGAATGCATA

Coding sequence (CDS)

ATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTCGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAA

Protein sequence

MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVCWFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN

Homology

[Close]

BLAST of Carg01177 vs. NCBI nr
Match: KAG6596276.1 (hypothetical protein SDJN03_09456, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027827.1 hypothetical protein SDJN02_09004 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.2 bits (879), Expect = 1.3e-90
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. NCBI nr
Match: XP_022945757.1 (uncharacterized protein LOC111449636 [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 6.6e-90
Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIF IVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. NCBI nr
Match: XP_023539852.1 (uncharacterized protein LOC111800404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIF IVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSK+IKSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKEIKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. NCBI nr
Match: XP_022971588.1 (uncharacterized protein LOC111470261 [Cucurbita maxima])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIF IVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESRSKK+KSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRSKKVKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGG VNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGIVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. NCBI nr
Match: XP_008448478.1 (PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 155/175 (88.57%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAE IVEH +SI AP IFFIVI FQFLA WL+HLKK GSN+QVE+ELRKSIKQLLREAS
Sbjct: 3   MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLREAS 62

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYS+VLLISKV+IYIVLVC
Sbjct: 63  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSQVLLISKVIIYIVLVC 122

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           WFWRASVATVPHHLVQPFG+FLSW+AGGTVNDYVKVGIIPWLILSTRVSKFVC+V
Sbjct: 123 WFWRASVATVPHHLVQPFGKFLSWKAGGTVNDYVKVGIIPWLILSTRVSKFVCQV 177

[Close]

BLAST of Carg01177 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E+++E R  + AP  F +V+ FQ L+ WLD LKK+GS N  E ELR  IKQLLREAS
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
            LSQP+TFAQAAKLRRSAA KEKELA Y E   K+IK SY +Y + LL SKV+IY++LV 
Sbjct: 61  ALSQPATFAQAAKLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVL 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCR 175
            FWR  +A +   LVQPFG  LSW  GG +  +V VGIIPWLILS RVSK+VCR
Sbjct: 121 CFWRTPIAIIAKQLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174

[Close]

BLAST of Carg01177 vs. ExPASy TrEMBL
Match: A0A6J1G1T6 (uncharacterized protein LOC111449636 OS=Cucurbita moschata OX=3662 GN=LOC111449636 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.2e-90
Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIF IVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. ExPASy TrEMBL
Match: A0A6J1I7A9 (uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIF IVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESRSKK+KSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRSKKVKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGG VNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGIVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]

BLAST of Carg01177 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.4e-79
Identity = 155/175 (88.57%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAE IVEH +SI AP IFFIVI FQFLA WL+HLKK GSN+QVE+ELRKSIKQLLREAS
Sbjct: 3   MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLREAS 62

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYS+VLLISKV+IYIVLVC
Sbjct: 63  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSQVLLISKVIIYIVLVC 122

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           WFWRASVATVPHHLVQPFG+FLSW+AGGTVNDYVKVGIIPWLILSTRVSKFVC+V
Sbjct: 123 WFWRASVATVPHHLVQPFGKFLSWKAGGTVNDYVKVGIIPWLILSTRVSKFVCQV 177

[Close]

BLAST of Carg01177 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.7e-79
Identity = 155/175 (88.57%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E IVEHR+SI AP IFFIVI FQFLA WL+HLKKRGSN+QVEMELRKSIKQLL+EAS
Sbjct: 1   MEPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKKRGSNSQVEMELRKSIKQLLKEAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYS+VLL+SKV+I+IVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSQVLLVSKVIIHIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           WFWRASVATVPHHLVQPFG+FLSWRAGGTVNDYVKVGIIPWLILSTRVSKFV RV
Sbjct: 121 WFWRASVATVPHHLVQPFGKFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVFRV 175

[Close]

BLAST of Carg01177 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.7e-76
Identity = 152/174 (87.36%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 2   EAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAST 61
           EAE IVEHR+SI AP IF IVIAFQFLA WL+HLKK GSN+QVEMELRKSIKQLLREAST
Sbjct: 6   EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 65

Query: 62  LSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVCW 121
           LSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYSRVLLISKV +YI LV W
Sbjct: 66  LSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSRVLLISKVFMYITLVFW 125

Query: 122 FWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           FWR SVATVPHHLVQPFGR LSW+AGG VNDYVKVGIIPWLILSTRVSKFVC+V
Sbjct: 126 FWRVSVATVPHHLVQPFGRVLSWKAGGIVNDYVKVGIIPWLILSTRVSKFVCQV 179

[Close]

BLAST of Carg01177 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 0


Query: 1   MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E+++E R  + AP  F +V+ FQ L+ WLD LKK+GS N  E ELR  IKQLLREAS
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
            LSQP+TFAQAAKLRRSAA KEKELA Y E   K+IK SY +Y + LL SKV+IY++LV 
Sbjct: 61  ALSQPATFAQAAKLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVL 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCR 175
            FWR  +A +   LVQPFG  LSW  GG +  +V VGIIPWLILS RVSK+VCR
Sbjct: 121 CFWRTPIAIIAKQLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174

The following BLAST results are available for this feature:

BLAST of Carg01177 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596276.1	1.3e-90	100.00	hypothetical protein SDJN03_09456, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945757.1	6.6e-90	99.44	uncharacterized protein LOC111449636 [Cucurbita moschata]	[more]
XP_023539852.1	1.9e-89	98.87	uncharacterized protein LOC111800404 [Cucurbita pepo subsp. pepo]	[more]
XP_022971588.1	2.1e-88	97.74	uncharacterized protein LOC111470261 [Cucurbita maxima]	[more]
XP_008448478.1	1.5e-78	88.57	PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]	[more]

BLAST of Carg01177 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H5D2	1.5e-52	61.49	Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1	[more]

BLAST of Carg01177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1T6	3.2e-90	99.44	uncharacterized protein LOC111449636 OS=Cucurbita moschata OX=3662 GN=LOC1114496...	[more]
A0A6J1I7A9	1.0e-88	97.74	uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261...	[more]
A0A1S3BKE1	7.4e-79	88.57	uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=...	[more]
A0A0A0L4T9	9.7e-79	88.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1	[more]
A0A6J1L884	7.7e-76	87.36	uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212...	[more]

BLAST of Carg01177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16444.1	1.1e-53	61.49	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 12..168
None	No IPR available	PANTHER	PTHR11760:SF44	BNAC07G33680D PROTEIN	coord: 12..168
IPR028945	Get1 family	PFAM	PF04420	CHD5	coord: 39..161 e-value: 4.5E-10 score: 39.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01177-RA	Carg01177-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071816	tail-anchored membrane protein insertion into ER membrane