Carg01164 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01164
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 886794 .. 888133 (+)
RNA-Seq ExpressionCarg01164
SyntenyCarg01164
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAACTCGACACCATCAACACATTTGCTGTCAGAAATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGTAGATTGGTACTGACATATAGTTCATTTGAGAGCTTTTTTCTATCTATTTGCAAGCACCGTATCTTTTAATTTGTAGATATGAGTGACAAGGCCTATAGGGCACAAATTGGTTTCATTGATGCATATAGGTTGTGGTAATTTTCAAAAAGAGAGACATCTTTCTATTCACGTAAGTTTTTCGGTTTCTAAACCCTAAAAATTAACCACCATTACCAAAATTAAACTGCTGATTCCATCACCAGTCAATGTTTTTCGGTTACTTGGATATCTTTGATAAATGAGGAATATTGCCTTTTAATTCTTCTGAAGTGAGAACTTTTTTTCTTTTGCCCCTCTATTTTCTTCCCTTGCAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGTACGAAGCCATTACTTTGTTTAGAAGATTATTTTCTGAGTTGGCAAATCTTTCCTACTATTTCCTTCACAATTATGGTGGTGAATTTTACTTAAATATATTAAAATCAGATATTTAAATGAGTCATGTGCTTGCATCACAGACTACTTATGGCTTGCCACCATCAACCAATAGCTAAAGAAATCCTAATACATGGATCGGAACGATGTTTTTTAATAATTATAATGATGTAAAAGTTAAAGAGAGAAATTTAAAAAAAAATATTTTTGTTAACATTTGGTCCATAGAACTCAAGGACACAAATGTACAACCTATAGAATAAAACATTTCCAAGAGCTAATACTTATTCTATTCTGTGGGGCCTTTGGTTAGAGAGAAACAATAGGAGATTGAGAGATCTAGTGAAGAGATGTGTTCTCTTGTGGGGTTTTAAGCTTCTCTCTGTAATTATTCTTTTGATCTCATTGTGTTAGATCGGAGTCCCATGGCTTGGGTTGTCTTTTTGTGTGTCTTCTGTATTCACCTTGAGTAGGAGTGAAGCTTTTCAGATGCTCTTAAGGGTAGGAGTTGTCATAGATGGCCTTTGTTGGAGGCGGGGATGTGTTGTCCCATTCCACCTCGCATTTATAGCCCATTTTCTTGTGTTATAATGTAGGAAAAGAAGTGTTGTGCTCTGTCAATCACTTGATAAGGCCACCGAAAATGAAGTTAACCGTTGCCTCTTTATATGCAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACAATGGCAACAATGGCAACTCATCCATGA

mRNA sequence

CATAACTCGACACCATCAACACATTTGCTGTCAGAAATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACAATGGCAACAATGGCAACTCATCCATGA

Coding sequence (CDS)

ATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACAATGGCAACAATGGCAACTCATCCATGA

Protein sequence

MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRSNVIDSDEELDLATMATMATHP
Homology
[Close]
BLAST of Carg01164 vs. NCBI nr
Match: KAG7027840.1 (hypothetical protein SDJN02_09017 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRSNVIDSDEELD 60
          MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRSNVIDSDEELD
Sbjct: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRSNVIDSDEELD 60

Query: 61 LATMATMATHP 72
          LATMATMATHP
Sbjct: 61 LATMATMATHP 71

[Close]
BLAST of Carg01164 vs. NCBI nr
Match: KAG6596291.1 (hypothetical protein SDJN03_09471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 3.5e-26
Identity = 71/97 (73.20%), Postives = 71/97 (73.20%), Query Frame = 0 

Query: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQ------------ 60
          MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQ            
Sbjct: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLD 60

Query: 61 --------------RSNVIDSDEELDLATMATMATHP 72
                        RSNVIDSDEELDLATMATMATHP
Sbjct: 61 KATENEVNRCLFICRSNVIDSDEELDLATMATMATHP 97

The following BLAST results are available for this feature:
BLAST of Carg01164 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027840.11.8e-30100.00hypothetical protein SDJN02_09017 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6596291.13.5e-2673.20hypothetical protein SDJN03_09471, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg01164 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01164 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01164 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01164-RACarg01164-RAmRNA