Carg01127 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01127
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDCD domain-containing protein
LocationCarg_Chr06: 1097070 .. 1099775 (+)
RNA-Seq ExpressionCarg01127
SyntenyCarg01127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAAAAGTGGAAGGTATGCATTGACTTTATCGACACGAATAAAGCTTGTTTAAACAAAAACTTCCCTTTTTTAAGATTCAATCATGTTTGAGAGATGCTTACTCTGAGCCTAATCAAATTCATTTGCACAATATAGTTCCTTTTTTTTTTTTTTTAATTTTTATAATTAGTCTTACTTATTTCTTCAACCTTTGAAATTTAGTTGTTTCAATGTTTTTTCCCTGACCGTTAGATTGCAAAAGTTGTGCCATTGATTCCGCATATACGCGACACGTGCAGTCGCATTGACTTATACTATAAGCACGGAACACTTGATCGTAGCCTCCACGTTTCTTCACTACACTGAGAGTCCCTCCTCAGCGCGTTGAGAAGCACCTCATTTCGCGCCTTTTCTTAATTCTTTTTTTTTGCGATTTCACACAGTAAAGCGCAGTCGCTCTGTTCGCCTCTCTCGCGATTGTGAGAGAGTTCTCGAGAGAGTGAAAGGAAACTTCATTATCGCCTGAAGAATTTCATTTTAGATTTTGTGGAAGAGTTGCCAGATATTGTGATCTCTTATCCTAATCCATTGCTGTGAAAATTTGCTTTGTTCCGACGGTGAGGTCTTCATTTGTATAGTTCGCCTCAAGACGGAAGGTACGTTCAGATAGCGAGAATCTCGTTTGATTTAGTGGTTTTTTTATTGAAAATGATTCGATATTGTTCTCGTTTTATAGTTGTAGCCATGGATTTCTGATTTTTAGTTTCTTAGAAGTTAGCATTCAAGAAACATAGTGATATTTGAAGTGCTCATTCCTGTTATCTTTCTTCTTCCGAAGTTTGGTTAGTGGTTTGCGAGTAATGCTCGCAGACTTGATGCATTTAAGACGATAAGAACTCCTGGCGAAGTCTGCTATGTATTTTGACATGCGCTTTCGTATGTATCATTAGGCACTTGTTCATATTAGTTAGATAATCTCTGGAATTTAAATATTTTCTTCTGAAACGAATTGTACTCTTCATTTCACTCTAGGATCATGTTTTCAAATACGTCGTGATCGAAGAATTGTTCATTTCTTTCAGATAACATGTTTTTCCTCTCCTGTGCTTTATACTTTTATATGCTTACCGTTTGGAATCACGTCAGAGACCTTCATGAGTACTTTCATACTGTCATGGTAGAAGATTCGCTAATTTCTCATTAGATTTTGTAAATGTCGTTATTTATACAATTTTTGTTACTAATTGTTTCTTTTGTCCAGCCTTACAATTTACATTGTTTTTGTTTTTTTCCCTTCTATTTGAGGAATTTTTGGAGTTCGGGAAGATCCTTTGGCATTTTGACATACTTTTATGTTTGTACTTTGTAATCGGTGTAGTTTAGTTCCTTTTGTGTTGCACGTTAATGATCCTTAAGCATTTTAAGTGTTTTATTTTTACCTTCTCCTCACCAAATCATTTTGACATTATTATATTGCATGCTATATAAGTACTATGTGATCTCTATCTTCTGGTGAACTCAAGTCATCAGCCTACTATGAATCAACTTTGAGCAAATATGAATCACCACACAAAAGGTCAATCTGTTATTAACATTATTAGTGTTCAGTTTTCATACTTACGCTAATATTTTTTGTTTTTTTTCCTTCTGCTTCCCTCAAATAATTTTACGTTCTTCTTGCAGTTTTGTAGAGCCAAAAGTATGTAATAAATAAGTTATGTCGACTAGATGTGGTTTTCCACTTCAGAACCTACTTCTTCTTTTTATATGTTTTCATAGCAGAAATCCGGAGATCGTTAAAATGGACAATGAATGTAATTCCTGTGGGATGAATTTGTTGTGCGGGATGACACGTGTGACTTTGGTTACAATGTGCAGTGTATTATTTTAGTTTATGATTTTGACTAGATTTTTTTTTCACTCCTATATATGCCTGAATGAATTCAGGAAAGAGAGCTCTATATTTCAAGGCTGGATCTTCTGCTTGATTGAATGCTGCTGCACTGTCCAGAATTTTGAGCTAGTGTGACCTTGGAAGCGTAACATTTGGATGTACAAACAGCATATGAAGGAGTGTCTTTCCAGCCAGCTTTTTGGTTCGTATCCCCAACTCAATTGATATTTTCTGCTTTTCTTTCTCTTTTTATTTTACTTCGTTTACTGGTTTATATTTACACTTCAGCGCTTTGTTAGCTTAAAGAACATCATTTATTTTATTGGAAATTACACGGTGATATCCAATACTTTGTTCTTCTTCCAATTTTCCTTCCCTCTTCACTCTATGAGTATCCTCTTGTTTTGTTTCGTTTTTCTACCCTTTGATCACTAACATCTCTATTTTCCATCTGTATAGGTTTGCCTTCCCTACACTTTCCATATGTGTAGAATATCGATCCTGGTTTGCCTTTGTTTCTATTCAACTATAGCTAGAGAAACTTGCATGTTATCCTTGAGGCGGCTAGTTCTGGTCAGACGAATATTAATCCATATGGGTGGACTACTGATGGTTCAGAGAGAACACTTTATCCAGCTCAGGTTTTACCAGAAAATTTCCGTACTTGTGTTATCTCTCCGAAGTCGCACGATTGTAAAGATACTCAATGGTCATCACCAAGACAATGCGGTTCACAGTCTTGTTCGGAAGCACTGCCAACCTTTGTTAGAAAATCTGTTCAGACCTATAGTTACAACTATGCCCCATTCATTTCTGGTTTGGACTAG

mRNA sequence

ATGAACGAAAAGTGGAAGATTGCAAAAGTTGTGCCATTGATTCCGCATATACGCGACACGTGCAGTCGCATTGACTTATACTATAAGCACGGAACACTTGATCGTAGCCTCCACTGGTTTGCGAGTAATGCTCGCAGACTTGATGCATTTAAGACGATAAGAACTCCTGGCGAAGTCTGCTATTTTTGTAGAGCCAAAAAAATCCGGAGATCGTTAAAATGGACAATGAATAGAAACTTGCATGTTATCCTTGAGGCGGCTAGTTCTGGTCAGACGAATATTAATCCATATGGGTGGACTACTGATGGTTCAGAGAGAACACTTTATCCAGCTCAGGTTTTACCAGAAAATTTCCGTACTTGTGTTATCTCTCCGAAGTCGCACGATTGTAAAGATACTCAATGGTCATCACCAAGACAATGCGGTTCACAGTCTTGTTCGGAAGCACTGCCAACCTTTGTTAGAAAATCTGTTCAGACCTATAGTTACAACTATGCCCCATTCATTTCTGGTTTGGACTAG

Coding sequence (CDS)

ATGAACGAAAAGTGGAAGATTGCAAAAGTTGTGCCATTGATTCCGCATATACGCGACACGTGCAGTCGCATTGACTTATACTATAAGCACGGAACACTTGATCGTAGCCTCCACTGGTTTGCGAGTAATGCTCGCAGACTTGATGCATTTAAGACGATAAGAACTCCTGGCGAAGTCTGCTATTTTTGTAGAGCCAAAAAAATCCGGAGATCGTTAAAATGGACAATGAATAGAAACTTGCATGTTATCCTTGAGGCGGCTAGTTCTGGTCAGACGAATATTAATCCATATGGGTGGACTACTGATGGTTCAGAGAGAACACTTTATCCAGCTCAGGTTTTACCAGAAAATTTCCGTACTTGTGTTATCTCTCCGAAGTCGCACGATTGTAAAGATACTCAATGGTCATCACCAAGACAATGCGGTTCACAGTCTTGTTCGGAAGCACTGCCAACCTTTGTTAGAAAATCTGTTCAGACCTATAGTTACAACTATGCCCCATTCATTTCTGGTTTGGACTAG

Protein sequence

MNEKWKIAKVVPLIPHIRDTCSRIDLYYKHGTLDRSLHWFASNARRLDAFKTIRTPGEVCYFCRAKKIRRSLKWTMNRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQVLPENFRTCVISPKSHDCKDTQWSSPRQCGSQSCSEALPTFVRKSVQTYSYNYAPFISGLD
Homology
[Close]
BLAST of Carg01127 vs. NCBI nr
Match: KAG7027876.1 (hypothetical protein SDJN02_09053, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.9 bits (956), Expect = 1.5e-99
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MNEKWKIAKVVPLIPHIRDTCSRIDLYYKHGTLDRSLHWFASNARRLDAFKTIRTPGEVC 60
           MNEKWKIAKVVPLIPHIRDTCSRIDLYYKHGTLDRSLHWFASNARRLDAFKTIRTPGEVC
Sbjct: 1   MNEKWKIAKVVPLIPHIRDTCSRIDLYYKHGTLDRSLHWFASNARRLDAFKTIRTPGEVC 60

Query: 61  YFCRAKKIRRSLKWTMNRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQVLPENFRT 120
           YFCRAKKIRRSLKWTMNRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQVLPENFRT
Sbjct: 61  YFCRAKKIRRSLKWTMNRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQVLPENFRT 120

Query: 121 CVISPKSHDCKDTQWSSPRQCGSQSCSEALPTFVRKSVQTYSYNYAPFISGLD 174
           CVISPKSHDCKDTQWSSPRQCGSQSCSEALPTFVRKSVQTYSYNYAPFISGLD
Sbjct: 121 CVISPKSHDCKDTQWSSPRQCGSQSCSEALPTFVRKSVQTYSYNYAPFISGLD 173

[Close]
BLAST of Carg01127 vs. NCBI nr
Match: XP_022157257.1 (influenza virus NS1A-binding protein homolog [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-08
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           NR LH I EAAS GQ NINPYGWTTDGSERTLYPAQV
Sbjct: 79  NRKLHGIFEAASYGQMNINPYGWTTDGSERTLYPAQV 115

[Close]
BLAST of Carg01127 vs. NCBI nr
Match: XP_038905252.1 (kelch-like protein 36 [Benincasa hispida] >XP_038905253.1 kelch-like protein 36 [Benincasa hispida] >XP_038905254.1 kelch-like protein 36 [Benincasa hispida] >XP_038905255.1 kelch-like protein 36 [Benincasa hispida] >XP_038905256.1 kelch-like protein 36 [Benincasa hispida] >XP_038905257.1 kelch-like protein 36 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 78  RNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           R LH I EAASSGQ NINPYGWTTDGSERTLYPAQV
Sbjct: 80  RKLHGIFEAASSGQMNINPYGWTTDGSERTLYPAQV 115

[Close]
BLAST of Carg01127 vs. NCBI nr
Match: KAG6580447.1 (Kelch-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-08
Identity = 46/121 (38.02%), Postives = 57/121 (47.11%), Query Frame = 0 

Query: 24  IDLYYKHGTLDRSLHWFASNARRLDAFKTIRT-----PGEVCYFCRAKKIRRSLKWTM-- 83
           +D   +  T  R+L + A ++ RLDA +  R       G V + C    I+  L   +  
Sbjct: 26  VDCGERMNTGQRALKFKAGSSSRLDAGEVYRNLSKCHLGSVIFGCTNSTIKECLSNQLFG 85

Query: 84  ------------------------NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQ 114
                                    R L+ I EAASSGQ NINPYGWTTDGSERTLYPAQ
Sbjct: 86  LPSQHFSYVKNIDPGLPLFLFNYSERKLNGIFEAASSGQININPYGWTTDGSERTLYPAQ 145

[Close]
BLAST of Carg01127 vs. NCBI nr
Match: KAF3948203.1 (hypothetical protein CMV_025774 [Castanea mollissima])

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-08
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 56  PGEVCYFCRAKKIRRSLKWTM----NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPA 114
           PG+  +F   KKI   L   +    +R LH I EAAS+GQ NINPYGWTTDGSERT YPA
Sbjct: 60  PGQ--HFSYVKKIDPGLPLFLFNYSDRRLHGIFEAASNGQMNINPYGWTTDGSERTSYPA 119

[Close]
BLAST of Carg01127 vs. ExPASy TrEMBL
Match: A0A6J1DU24 (influenza virus NS1A-binding protein homolog OS=Momordica charantia OX=3673 GN=LOC111024010 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.9e-09
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           NR LH I EAAS GQ NINPYGWTTDGSERTLYPAQV
Sbjct: 79  NRKLHGIFEAASYGQMNINPYGWTTDGSERTLYPAQV 115

[Close]
BLAST of Carg01127 vs. ExPASy TrEMBL
Match: A0A2N9G9P6 (DCD domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24082 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAAS+GQ NINPYGWTTDGSERTLYPAQV
Sbjct: 84  DRRLHGIFEAASAGQMNINPYGWTTDGSERTLYPAQV 120

[Close]
BLAST of Carg01127 vs. ExPASy TrEMBL
Match: A0A2I4F3D6 (kelch-like protein 4 OS=Juglans regia OX=51240 GN=LOC108995102 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 37/58 (63.79%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV----------LPENFRTCVIS 125
           NR L  I EAAS GQ NINPYGWTTDGSERTLYPAQV          LPEN    +IS
Sbjct: 84  NRKLSGIFEAASPGQMNINPYGWTTDGSERTLYPAQVQILVRKHCQPLPENQFKPIIS 141

[Close]
BLAST of Carg01127 vs. ExPASy TrEMBL
Match: A0A5N6RJ86 (DCD domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017111 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAAS+GQ NINPYGWTTDGSE+TLYPAQV
Sbjct: 84  DRKLHGIFEAASNGQMNINPYGWTTDGSEKTLYPAQV 120

[Close]
BLAST of Carg01127 vs. ExPASy TrEMBL
Match: A0A7J7GK30 (DCD domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_022197 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAASSGQ NINPY WTTDGSERTLYPAQV
Sbjct: 84  DRKLHGIFEAASSGQMNINPYAWTTDGSERTLYPAQV 120

[Close]
BLAST of Carg01127 vs. TAIR 10
Match: AT5G01660.1 (CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAA  GQ N +PYGWT+DGSERT YPAQV
Sbjct: 65  DRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQV 101

[Close]
BLAST of Carg01127 vs. TAIR 10
Match: AT3G11000.1 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.8e-04
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAAS G+ NI+   W+ +G++ + YPAQV
Sbjct: 58  DRTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQV 94

[Close]
BLAST of Carg01127 vs. TAIR 10
Match: AT3G11000.2 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.8e-04
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 77  NRNLHVILEAASSGQTNINPYGWTTDGSERTLYPAQV 114
           +R LH I EAAS G+ NI+   W+ +G++ + YPAQV
Sbjct: 177 DRTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQV 213

The following BLAST results are available for this feature:
BLAST of Carg01127 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027876.11.5e-99100.00hypothetical protein SDJN02_09053, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022157257.11.6e-0886.49influenza virus NS1A-binding protein homolog [Momordica charantia][more]
XP_038905252.11.6e-0888.89kelch-like protein 36 [Benincasa hispida] >XP_038905253.1 kelch-like protein 36 ... [more]
KAG6580447.12.8e-0838.02Kelch-like protein 8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF3948203.14.8e-0859.68hypothetical protein CMV_025774 [Castanea mollissima][more]
BLAST of Carg01127 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01127 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DU247.9e-0986.49influenza virus NS1A-binding protein homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A2N9G9P61.4e-0883.78DCD domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24082 PE=4... [more]
A0A2I4F3D63.0e-0863.79kelch-like protein 4 OS=Juglans regia OX=51240 GN=LOC108995102 PE=4 SV=1[more]
A0A5N6RJ863.0e-0881.08DCD domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017111 PE=... [more]
A0A7J7GK303.0e-0883.78DCD domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_022197 PE=4 ... [more]
BLAST of Carg01127 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01660.12.1e-0970.27CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IP... [more]
AT3G11000.15.8e-0448.65DCD (Development and Cell Death) domain protein [more]
AT3G11000.25.8e-0448.65DCD (Development and Cell Death) domain protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01127-RACarg01127-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034976 response to endoplasmic reticulum stress