Carg01077 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01077
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	Carg_Chr06: 1336837 .. 1338238 (+)
RNA-Seq Expression	Carg01077
Synteny	Carg01077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCTCTACAGCTCCTGAACTCATTTTATCTTCGTTGCTGACTCTCAGACCCTGAAACTTGATCTCTTTCGTGTTTCTCAGCTGTTAAGAACCTTGTATGCTGCAAGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGTTGTCATGTGAGTACTGCTTCGCTTCTTTGACCTAATATGAATTTATTTTGTTCTTCTCTTTCTACTTTTCATCATTGATGTTATTTTCAAGTGCATTAGCTTTATCTTCTGTAATTGATTTATATGTGTTCTTCATTGTAAAGAATTTTCTCTCGGTTTAATTTTTATTCTATAAGCGTTATCTGGATCTGGATGTCAATTTTGAAATAGTTCGGTGATGTTGTGATTTTCTAGGGCTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTCATCATGTTCCTTTAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGTAAGTTTCATCGAATTTTTTCCATTTCCATGAGCTCTGATCTACTGCGTTTTAAATTTGTTTGAGTTTCCATTACTTTTGTGAAATATGCATTTTTCGAGCTAGTGCAATGTATCTCTGATATAAGAATGGATAGACTTATACAGATATACAAAGAATTTTGTATAATTGAACTTTGAATCTTGCTCCAATTTCGTCAGTAAATCAGCATTTTGGTAATATCTAGCGCAGGGCCCTGTAAACAATCTACTAGGATGCTATCATTTCGACCTTGTCAATTGAAAGCCGAGAACTCGAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTTTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAATATAGAAACATTCAAATGCTAGAAGAAGATTCATGTCTCA

mRNA sequence

ACTTCCTCTACAGCTCCTGAACTCATTTTATCTTCGTTGCTGACTCTCAGACCCTGAAACTTGATCTCTTTCGTGTTTCTCAGCTGTTAAGAACCTTGTATGCTGCAAGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGTTGTCATGGCTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTCATCATGTTCCTTTAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACAATCTACTAGGATGCTATCATTTCGACCTTGTCAATTGAAAGCCGAGAACTCGAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTTTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAATATAGAAACATTCAAATGCTAGAAGAAGATTCATGTCTCA

Coding sequence (CDS)

ATGCTGCAAGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGTTGTCATGGCTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTCATCATGTTCCTTTAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACAATCTACTAGGATGCTATCATTTCGACCTTGTCAATTGAAAGCCGAGAACTCGAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTTTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

Protein sequence

MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHASPIDL

Homology

[Close]

BLAST of Carg01077 vs. NCBI nr
Match: KAG7027924.1 (F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 554.7 bits (1428), Expect = 4.4e-154
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG
Sbjct: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Carg01077 vs. NCBI nr
Match: KAG6596375.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 552.0 bits (1421), Expect = 2.9e-153
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCC+GYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Carg01077 vs. NCBI nr
Match: XP_022941815.1 (uncharacterized protein LOC111447066 [Cucurbita moschata])

HSP 1 Score: 543.9 bits (1400), Expect = 7.8e-151
Identity = 262/267 (98.13%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCC+GYVTFISNRKSVRCSQSCEVF+HVP ALPKQYDIGLVKASIG
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           GYGFVSPSIPRCLGSTIGNFRPCKQS+RMLSFRPCQLKAENSSGESITLDAE LKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Carg01077 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 535.8 bits (1379), Expect = 2.1e-148
Identity = 259/267 (97.00%), Postives = 261/267 (97.75%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCC+GYVTFISNRKSVRCSQSCEVFHHVP A PKQYDIGLVKAS G
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           G GF+ PSIPRCLGSTIGNFRPCK STRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Carg01077 vs. NCBI nr
Match: XP_022971333.1 (uncharacterized protein LOC111470086 [Cucurbita maxima])

HSP 1 Score: 523.5 bits (1347), Expect = 1.1e-144
Identity = 250/260 (96.15%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67
           MALHTSSLCC+GYVTFISNRK+VRCSQSCEVFHHVP ALPKQYDIG VK S GGYGF+ P
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
            GYDNV+TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of Carg01077 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Carg01077 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 3.8e-151
Identity = 262/267 (98.13%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCC+GYVTFISNRKSVRCSQSCEVF+HVP ALPKQYDIGLVKASIG
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           GYGFVSPSIPRCLGSTIGNFRPCKQS+RMLSFRPCQLKAENSSGESITLDAE LKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Carg01077 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.3e-145
Identity = 250/260 (96.15%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67
           MALHTSSLCC+GYVTFISNRK+VRCSQSCEVFHHVP ALPKQYDIG VK S GGYGF+ P
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
            GYDNV+TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of Carg01077 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.2e-126
Identity = 223/260 (85.77%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67
           MALHT +LCC+ YVTFIS+RKSVRCSQS  VFHHVP A PKQ +I LV +S GG GF+ P
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           S  R +GS  GNFRPCKQ++R LSFRPCQLKAENSSGESITLDAETL+QDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of Carg01077 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.2e-122
Identity = 220/260 (84.62%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67
           MAL TS+LCC+ YVTFISN KSVRCSQS  VFHHVP ALPKQ +I LVK+S GG GF+ P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           +  R + S  GNFRPCKQ++R LSF P QLKAENSSGESITLDAETL+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of Carg01077 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.2e-122
Identity = 220/260 (84.62%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67
           MAL TS+LCC+ YVTFISN KSVRCSQS  VFHHVP ALPKQ +I LVK+S GG GF+ P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           +  R + S  GNFRPCKQ++R LSF P QLKAENSSGESITLDAETL+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of Carg01077 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-71
Identity = 144/272 (52.94%), Postives = 181/272 (66.54%), Query Frame = 0


Query: 8   MALHTSSLCCHGYVTFISNRKSVRC--SQSCEVFHHVPLALPKQYDI--GLVKASIGGYG 67
           MALH S + C      +SN   +      S  + H     LPK Y I   +V AS     
Sbjct: 1   MALHGSGVFCK-----VSNMVEITSPFGGSMRLLH-----LPKSYPIHCNMVSAS----- 60

Query: 68  FVSPSIPRCLGST---IGNFRPCKQSTRMLSFRPCQLKAENSSG----ESITLDAETLKQ 127
                     GS    + N  PC +       RPC++K E ++     ESI++D  TLKQ
Sbjct: 61  -------NTFGSAHLKLQNKEPCSR------LRPCRVKREENNQTADVESISMDENTLKQ 120

Query: 128 DLQNAIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDS 187
           DL+ A+ +E+Y  AA+IRD LK LQED+KASV +AN++FY+SFRNGDLAAMQ+LW++  +
Sbjct: 121 DLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGN 180

Query: 188 VCCVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKG 247
            CCVHPG +GI+GYD V+ SWE VW NYEFPL I+LKDVEVH RG+VGYVTC+E VKTKG
Sbjct: 181 PCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKG 240

Query: 248 -SSWGGQFVTNVFERINGQWFICIHHASPIDL 268
            SSWG QFV+NVFERI+GQWFICIHHASP+D+
Sbjct: 241 SSSWGAQFVSNVFERIDGQWFICIHHASPVDI 244

[Close]

BLAST of Carg01077 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-63
Identity = 125/222 (56.31%), Postives = 156/222 (70.27%), Query Frame = 0


Query: 44  LALPKQYDI--GLVKASIGGYGFVSPSIPRCLGST---IGNFRPCKQSTRMLSFRPCQLK 103
           L LPK Y I   +V AS               GS    + N  PC +       RPC++K
Sbjct: 15  LHLPKSYPIHCNMVSAS------------NTFGSAHLKLQNKEPCSR------LRPCRVK 74

Query: 104 AENSSG----ESITLDAETLKQDLQNAIADEDYARAAEIRDTLKALQEDSKASVFAANAK 163
            E ++     ESI++D  TLKQDL+ A+ +E+Y  AA+IRD LK LQED+KASV +AN++
Sbjct: 75  REENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSR 134

Query: 164 FYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKD 223
           FY+SFRNGDLAAMQ+LW++  + CCVHPG +GI+GYD V+ SWE VW NYEFPL I+LKD
Sbjct: 135 FYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKD 194

Query: 224 VEVHARGDVGYVTCVELVKTKG-SSWGGQFVTNVFERINGQW 256
           VEVH RG+VGYVTC+E VKTKG SSWG QFV+NVFERI+GQW
Sbjct: 195 VEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQW 218

[Close]

BLAST of Carg01077 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Carg01077 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Carg01077 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:

BLAST of Carg01077 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027924.1	4.4e-154	100.00	F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596375.1	2.9e-153	99.63	F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022941815.1	7.8e-151	98.13	uncharacterized protein LOC111447066 [Cucurbita moschata]	[more]
XP_023539336.1	2.1e-148	97.00	uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo]	[more]
XP_022971333.1	1.1e-144	96.15	uncharacterized protein LOC111470086 [Cucurbita maxima]	[more]

BLAST of Carg01077 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV9	1.3e-12	33.33	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]

BLAST of Carg01077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUV2	3.8e-151	98.13	uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]
A0A6J1I6J4	5.3e-145	96.15	uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086...	[more]
A0A0A0LA11	3.2e-126	85.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1	[more]
A0A5A7TRW4	2.2e-122	84.62	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G...	[more]
A0A1S3B5S8	2.2e-122	84.62	uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=...	[more]

BLAST of Carg01077 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09250.1	1.7e-71	52.94	Nuclear transport factor 2 (NTF2) family protein	[more]
AT3G09250.2	1.7e-63	56.31	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.1	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.2	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.3	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 137..266 e-value: 2.3E-41 score: 143.1
None	No IPR available	PANTHER	PTHR34957	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN	coord: 30..266
IPR001943	UVR domain	PFAM	PF02151	UVR	coord: 112..142 e-value: 2.0E-6 score: 27.3
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 150..264 e-value: 7.2E-23 score: 81.2
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 143..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01077-RA	Carg01077-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding