Carg01048 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01048
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 1483786 .. 1485448 (+)
RNA-Seq ExpressionCarg01048
SyntenyCarg01048
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACAGTTCAAATGAGCGTGATCTTGCAAGGCCAATGGCAATGGCGTCGTTTGAAAGCCATGTGATGCAAATTGCAAGACCGATCGTACGTTTTTGTTCTCTATAATTTACGGTTTTCGCTCGTTTGTTCCTTCTCCATTCTGGTTCGTCGAATTCTTTCGTTTAATTATTGCTCTTCCTCCTCAATTTGATAATCGTATTGGCAGTTGGATTGAACTCTTCGTCGAATGTATGAGACTCTGAATTGATCCCCTCCGCTTTTCTCCTGGCACATTATTCCACTCGCTGCTTTCAGATTCAAGCATGGCTCAACAGGTACCTCTCTCTTCTCTCTGTGTAGAAATTTTGAGTGCTTAATTTTGCCCTAATTTTGCGGTTCATATTGTTAATGTAGGAAGATAGATGGCCGTTAGGCTTGCGGCTAATGAACGCCTGAGTTGGATTGGCGGAAATCATCATGATCTCTCTGCTTTGTTTTCTTTCAATACTTTGCGAACTCATTCTCCTAGCTCCTTCACCGATTCTTCCTCAGATCTTGATACAGAGGTCTGTTTACTTCGATGTCTTTTTCTGTTTTTCTTTTGTCCGAGTTTATGTGTTTGCGTTAGAGAGGCTAGGAAATAGTTGGTATGGAAGAACATTATGCTTGGTTTGTGCAGGTAAACACTGGAATAATGCTTGATTTTTGTAGAATTCATTCCCTTGGCACCTCCTAACTTTCATGGAAACATTAACTACACTTTGGTAGAATTTGTATTACTTTGTATTCTAAAATTTATAACAATTTAGTTCTTCACATTTTGTGACAATTTAATCACAGCCATTAAAAATATCGTTAAATTTTGACCAGGTACTTTTTATTCATAACTAAACACATTTTGTTCTTAATCAATTTATCGATCTACTACATAAGAAATTTCATTGAATCTTATCAATATTTTTACAAACTAAGCTGTTATAAATTTTACAATATAGAGACTACTAAATTGTTATAAAAGTAAATGTATGGATACAAATTAAAGTTTAAAAACTAAATTACTACTTTTATGAAAGTTTAGTTGTAGTTCAATGATTTGCATTGGATCGCCTCGCTGTTAAGACTATATTTCTTTGTCTTACTTCTCTGAAGGGATTGAACTGAAGTTACAGGGTAGCCTTTTCAAAATGTGTATTTATTTTATTTGGAGCTCAATTATGGCCATCTTATATAGTTTTAATACAAAGTTTCAACTCTAGATCCCAACGACTACTCACCTATTCGTCCTGCTTCTCAAACAAACTCTTTGTTTTCCAATGATCAAGTAGCTCCAGTGTTGTTTGAACCGGTTGCCGAAGAGAAAATCAGAAGATCAGATGGAGAACTTGTCCAGGATGGTAACACTCAAGGGATTCCTCTACTATTTTCATGTTCATATTGCCAACTGTTTAAATGATTCTTTCTTTGATTCGTACAGTAACGTTTGAATGCAACTTTTTCTTCATGAAAAAGTGATGCAAGTCAAAAGTTAAATTCTCATTTGCTTCATTCTACCATTTGATTTGTAGGAGATTTACTTATCATTATCATCATTCAGCGATAGTGTTTGGGGCAGACAAATCGAGGCATTCGTCGTTGCTGCAACATTCAGTCTGTTTACTGCCAAGTTAGTGAACTACATTTGA

mRNA sequence

TTCACAGTTCAAATGAGCGTGATCTTGCAAGGCCAATGGCAATGGCGTCGTTTGAAAGCCATGTGATGCAAATTGCAAGACCGATCTTGGATTGAACTCTTCGTCGAATGTATGAGACTCTGAATTGATCCCCTCCGCTTTTCTCCTGGCACATTATTCCACTCGCTGCTTTCAGATTCAAGCATGGCTCAACAGGAAGATAGATGGCCGTTAGGCTTGCGGCTAATGAACGCCTGAGTTGGATTGGCGGAAATCATCATGATCTCTCTGCTTTGTTTTCTTTCAATACTTTGCGAACTCATTCTCCTAGCTCCTTCACCGATTCTTCCTCAGATCTTGATACAGAGCTCCAGTGTTGTTTGAACCGGTTGCCGAAGAGAAAATCAGAAGATCAGATGGAGAACTTGTCCAGGATGGAGATTTACTTATCATTATCATCATTCAGCGATAGTGTTTGGGGCAGACAAATCGAGGCATTCGTCGTTGCTGCAACATTCAGTCTGTTTACTGCCAAGTTAGTGAACTACATTTGA

Coding sequence (CDS)

ATGGCCGTTAGGCTTGCGGCTAATGAACGCCTGAGTTGGATTGGCGGAAATCATCATGATCTCTCTGCTTTGTTTTCTTTCAATACTTTGCGAACTCATTCTCCTAGCTCCTTCACCGATTCTTCCTCAGATCTTGATACAGAGCTCCAGTGTTGTTTGAACCGGTTGCCGAAGAGAAAATCAGAAGATCAGATGGAGAACTTGTCCAGGATGGAGATTTACTTATCATTATCATCATTCAGCGATAGTGTTTGGGGCAGACAAATCGAGGCATTCGTCGTTGCTGCAACATTCAGTCTGTTTACTGCCAAGTTAGTGAACTACATTTGA

Protein sequence

MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI
Homology
[Close]
BLAST of Carg01048 vs. NCBI nr
Match: KAG7027953.1 (hypothetical protein SDJN02_09132 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 4.4e-52
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRK 60
           MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRK
Sbjct: 1   MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRK 60

Query: 61  SEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI 110
           SEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI
Sbjct: 61  SEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI 109

[Close]
BLAST of Carg01048 vs. NCBI nr
Match: XP_022948948.1 (uncharacterized protein LOC111452435 isoform X3 [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRK 60
           MAVRLAANER SWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCL+RLPKRK
Sbjct: 1   MAVRLAANERQSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLDRLPKRK 60

Query: 61  SEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI 110
           SEDQMENLSRM IYLSLSSFSD VWGRQIEAFVVAATFSLFTAKLVNYI
Sbjct: 61  SEDQMENLSRM-IYLSLSSFSDRVWGRQIEAFVVAATFSLFTAKLVNYI 108

[Close]
BLAST of Carg01048 vs. NCBI nr
Match: XP_023540883.1 (uncharacterized protein LOC111801130 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 14  IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENLSRMEI 73
           + GNHH LSALFSFNTLRTHSPSSFTD SSDLDTELQCCLNRLPKR+ EDQMENL RM+I
Sbjct: 21  LAGNHHYLSALFSFNTLRTHSPSSFTDFSSDLDTELQCCLNRLPKREPEDQMENLFRMKI 80

Query: 74  YLSLSSFSDSVWGRQIEAFVV 95
           YLSLSSFSD VW RQIEAFV+
Sbjct: 81  YLSLSSFSDRVWVRQIEAFVL 101

[Close]
BLAST of Carg01048 vs. NCBI nr
Match: XP_023540884.1 (uncharacterized protein LOC111801130 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 14  IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENLSRMEI 73
           + GNHH LSALFSFNTLRTHSPSSFTD SSDLDTELQCCLNRLPKR+ EDQMENL RM I
Sbjct: 21  LAGNHHYLSALFSFNTLRTHSPSSFTDFSSDLDTELQCCLNRLPKREPEDQMENLFRM-I 80

Query: 74  YLSLSSFSDSVWGRQIEAFVV 95
           YLSLSSFSD VW RQIEAFV+
Sbjct: 81  YLSLSSFSDRVWVRQIEAFVL 100

[Close]
BLAST of Carg01048 vs. NCBI nr
Match: XP_023540885.1 (uncharacterized protein LOC111801130 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 68/96 (70.83%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 14  IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENLSRMEI 73
           + GNHH LSALFSFNTLRTHSPSSFTD SSDLDTELQCCLNRLPKR+ EDQMENL RM  
Sbjct: 21  LAGNHHYLSALFSFNTLRTHSPSSFTDFSSDLDTELQCCLNRLPKREPEDQMENLFRMR- 80

Query: 74  YLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI 110
                    S  G+      +AATFSLFTAKLVNYI
Sbjct: 81  ---------SCLGQTNRGIRLAATFSLFTAKLVNYI 106

[Close]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match: A0A6J1GAQ8 (uncharacterized protein LOC111452435 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452435 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MAVRLAANERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRK 60
           MAVRLAANER SWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCL+RLPKRK
Sbjct: 1   MAVRLAANERQSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLDRLPKRK 60

Query: 61  SEDQMENLSRMEIYLSLSSFSDSVWGRQIEAFVVAATFSLFTAKLVNYI 110
           SEDQMENLSRM IYLSLSSFSD VWGRQIEAFVVAATFSLFTAKLVNYI
Sbjct: 61  SEDQMENLSRM-IYLSLSSFSDRVWGRQIEAFVVAATFSLFTAKLVNYI 108

[Close]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match: A0A6J1I8Y9 (uncharacterized protein LOC111470251 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470251 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 14 IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENL 69
          + GNHHDLSALFSFNTLRTHSPSSFT+SSSDLDTELQCCLNRLPKR      E++
Sbjct: 20 LAGNHHDLSALFSFNTLRTHSPSSFTESSSDLDTELQCCLNRLPKRTRRSDGEHV 74

[Close]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match: A0A6J1I798 (uncharacterized protein LOC111470251 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470251 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 14 IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENL 69
          + GNHHDLSALFSFNTLRTHSPSSFT+SSSDLDTELQCCLNRLPKR      E++
Sbjct: 20 LAGNHHDLSALFSFNTLRTHSPSSFTESSSDLDTELQCCLNRLPKRTRRSDGEHV 74

[Close]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match: A0A6J1I2C4 (uncharacterized protein LOC111470251 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470251 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 14 IGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTELQCCLNRLPKRKSEDQMENL 69
          + GNHHDLSALFSFNTLRTHSPSSFT+SSSDLDTELQCCLNRLPKR      E++
Sbjct: 20 LAGNHHDLSALFSFNTLRTHSPSSFTESSSDLDTELQCCLNRLPKRTRRSDGEHV 74

[Close]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match: A0A0A0LA63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734280 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 8  NERLSWIGGNHHDLSALFSFNTLRTHSPSSFTDSSSDLDTE 49
          N R+  + GN HDLSA  SFNTLRTHSPSSFTDSSSDLDTE
Sbjct: 22 NARVGGVAGN-HDLSASVSFNTLRTHSPSSFTDSSSDLDTE 61

The following BLAST results are available for this feature:
BLAST of Carg01048 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027953.14.4e-52100.00hypothetical protein SDJN02_09132 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022948948.13.0e-4896.33uncharacterized protein LOC111452435 isoform X3 [Cucurbita moschata][more]
XP_023540883.11.8e-2986.42uncharacterized protein LOC111801130 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023540884.15.8e-2886.42uncharacterized protein LOC111801130 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023540885.11.3e-2470.83uncharacterized protein LOC111801130 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg01048 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01048 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GAQ81.4e-4896.33uncharacterized protein LOC111452435 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1I8Y91.2e-1580.00uncharacterized protein LOC111470251 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1I7981.2e-1580.00uncharacterized protein LOC111470251 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1I2C41.2e-1580.00uncharacterized protein LOC111470251 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0LA632.3e-0678.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734280 PE=4 SV=1[more]
BLAST of Carg01048 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01048-RACarg01048-RAmRNA