Carg01010 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01010
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit B
Location	Carg_Chr06: 1664127 .. 1667642 (+)
RNA-Seq Expression	Carg01010
Synteny	Carg01010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGGAAAGCAAAAACGAACGGTGCTGATAAGCTTGATTCTCTCATCTCAGTCGTCTCCTTTCTCCTACCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTAAATCCCTTCCCTCTCCCGCGCCCAAATTACAAATCCCCTTCCGTTTCTTCTCCCACCAGGTAAAACCTCTTCATTTTTCAATTGTTTTTTCTCTTTCTCTTCAAACCGATGTCAAACTCTTCGTAATTTCATGGTTTTTTTCCCGTTTTTTCGCTCTAAATCATCCTCCATCTTCCATTTTTGCTTCTGGTGTCTTCTGGAGCTTCGGTTTGTGGTCATTTTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGAGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGTACGGAAGTGTTTATTGTTCTATAGTTAATTGTTGTTCGTTTCTTGTTCTGAATTTTGGGATTCTTATGGTTGAATTGTATTTAGGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAATGCTAATACTAATGCATCGCCGGCCATTCTTTCACTATGTGTTCTGTTATCCACTTTTCATGATTCATTTGAAACAGGGAGCTCAGCTCATCATTTAGTCTTAACTTTTGATTTATTTAGTTCTTGTTTGTTAATTTTACTGCTGTTCGTTGTGTTCTTGAACTGATGGATGGCTGTTTTCTTTGCCTGCTGGTTGGGACTTGGGGGCGTTTTAGACTGAGGTAAGATAGTGTGTTTTCCTCTACGTTTCTGTGATTTGTCAACATCATGTTTGAATGAAATTAGGAGGTTTCTATATATTGTTTGTGTTGTGTTGTCTGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTCAATTATAAGAGTTACTTTTTTTCTCATTGAGCTGCCCTTTTTGGTGTTTTCTTCTAAGCTTTTTTCTTTCCCAATTCTGTAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAAGTACTCTCTCTCTCTCTCTCTCTCTCTCTCACATACACACGCACATACACACAAACAAGCACGTACTTCCATAATGTCCTTTGAATAAGCGAAGAAGCAGTTATGCTAGATTATTTAGATTGTGAAAAGTTTTTTTTTATCTCATTAGTCCAACTTTAACGTCAAAAAATGACTCAAATTTGAAAGAACAAGACAAAAATCATAATTACGATGAGCCTAGTGACCAGCCTAAGCACACCGCTAGCAGATATTGTTCTTTTTGGGCTTTCCTTTCTAGGTTTCTTCTCAAGGTTTTAAAACACTTATGTTAGGGGGAGGTTTCCACACCCTTATAAGAAATGCTTTGTTCCCCTCTCCAACCGATGTGAAATCTCACATTCCACCTGTGATGTCCCACATTGGTTGGCTAATCTCACATTCCACCTGTGATGTCCCACATTGGTTGGCTAGCAGACGCATTACACCACTACTCCCTCCGGTCAATTATAGGAGGATAATATCTGCTAGCGGTGGGCCTGGGTCGTTACACCACTACTCCCTCCGGGAGCTCGACGTCCTCGCTGGCACACCGCCTAGTAACCAGCTTTGATACCATGTGTAACAACCCAACCCAAACCTACCGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCTGAGCTTCTTCTCGAGGTTTTAAAATGTCTATGTTAGAGAGAAGTTTCCACACCCTTATAAGGAATGCTTTGTTCCCCTCTACAACAGATGTGGGATCTCATAGAGGAAGAAAATTCATGAGTGCTTATCCAACTAAAAGTCATTTTCCAGTTGGAAGCAACGGTTTGTAACTCATGTCTACTTTTGTGTCATGAAGCAAGGCGAATCCCATTGGTAGACTCCCCATTACTCCCCATGATTTGCAGAATTTGTTAGGGTTTGCTAGAGTTCATCCTTTCTACCCTCTCTTTCAGTAACTTCATTGTTTTAGAAAAGTAATTTTGTTTCTAGTTCATACTTCATATCTTCATGAGTCTTGGAAGTTCTTTCCTGAGTCAAAGCATCTGTCTCGTATTATCACTTGGGGTTTATTGTTAGAGCTTTCATATACAAGTCTTGGTTGAAATATATGAACAATTAGTACATAAATTTGAATGTCTCAAGGAGATGACTTACAGGAGTAAATGACTATTTCCCTTGTAGCTTTGGTGATAGAAAATGAGCATGTAACCTTTTTGAACTTCTCTAAATTGAGATACCCTTTTGAGTCTAGTGGTCAAATAAATAATTAAAGGACTAGGTGAGAATCGGTTCAAGCCATGTTGGCTACTTACCTAAGATATAGTATTCTACTAGTTACCGTGACAATCAAATATAGTAGGATCGCTGACCCAGACATTCACGGATATAGAAATAATTAGAATCCCGGGTCCTATAAAAACATTTAAGACATAAATGAGCAGGAACGAACCAGCTACAAGTACATGTTAGAAACTTTGTTTTTACCATTCACAATAGTTTCAAGTAGTTGACTTGGAAGTGTTTCTCCTCTTTAGGTTTAATACCCACCTTCGCATTTTTTGCAGTCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAACTTGCCTCGAATTCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGAGGTTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAACGAATGATTTGGTTCTAGAAGTGTTCTTAAACCCTCCTTTGCTGTAAGATGAAATGAATGGTTTTTCATTGTGTTGATCTCTGGTCGTTGTCTTGTTTGTTTGTTTGTTTTTTACTGTTATATTCCCTTTGGGGGAAAAGTAAAAGTAGTTTCCCTACCAAAAGTGTTTGCTTCATATCTACT

mRNA sequence

AGGGGGAAAGCAAAAACGAACGGTGCTGATAAGCTTGATTCTCTCATCTCAGTCGTCTCCTTTCTCCTACCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTAAATCCCTTCCCTCTCCCGCGCCCAAATTACAAATCCCCTTCCGTTTCTTCTCCCACCAGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAACTTGCCTCGAATTCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGAGGTTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAACGAATGATTTGGTTCTAGAAGTGTTCTTAAACCCTCCTTTGCTGTAAGATGAAATGAATGGTTTTTCATTGTGTTGATCTCTGGTCGTTGTCTTGTTTGTTTGTTTGTTTTTTACTGTTATATTCCCTTTGGGGGAAAAGTAAAAGTAGTTTCCCTACCAAAAGTGTTTGCTTCATATCTACT

Coding sequence (CDS)

ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA

Protein sequence

MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG

Homology

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BLAST of Carg01010 vs. NCBI nr
Match: KAG7027991.1 (Nuclear transcription factor Y subunit B-8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 6.8e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG 118
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG 117

[Close]

BLAST of Carg01010 vs. NCBI nr
Match: XP_022948121.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_022948130.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_023005187.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023005188.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023540646.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo] >XP_023540647.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 4.4e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. NCBI nr
Match: KAG6596449.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1    MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
            MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 920  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 979

Query: 61   CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 980  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 1034

[Close]

BLAST of Carg01010 vs. NCBI nr
Match: XP_004137802.1 (nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus] >XP_008442637.1 PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis melo] >KGN58930.1 hypothetical protein Csa_002371 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. NCBI nr
Match: XP_023529112.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529113.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-50
Identity = 106/122 (86.89%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MADAPASP--GGGSHESGEHSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKD 60
           MA+APASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKD
Sbjct: 1   MAEAPASPGGGGGSHESG--SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKD 60

Query: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKY 116
           AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK YL KY
Sbjct: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKY 120

[Close]

BLAST of Carg01010 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-49
Identity = 105/129 (81.40%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 1   MADAPASP--GGGSHESGEHSPR------------SNVREQDRFLPIANISRIMKKALPA 60
           MAD P SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PA
Sbjct: 1   MADGPGSPGGGGGSHESG--SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPA 60

Query: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 116
           NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PL
Sbjct: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 120

[Close]

BLAST of Carg01010 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-48
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 9   GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 68
           GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 69  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           SF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYRE 118

[Close]

BLAST of Carg01010 vs. ExPASy Swiss-Prot
Match: Q8VYK4 (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-47
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]

BLAST of Carg01010 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-46
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110

[Close]

BLAST of Carg01010 vs. ExPASy TrEMBL
Match: A0A6J1KSG0 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498291 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. ExPASy TrEMBL
Match: A0A6J1G8V7 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451794 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. ExPASy TrEMBL
Match: A0A6J1J2H6 (nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482090 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. ExPASy TrEMBL
Match: A0A6J1FB03 (nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442405 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. ExPASy TrEMBL
Match: A0A5D3DNK1 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002260 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]

BLAST of Carg01010 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-49
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 9   GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 68
           GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 69  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           SF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYRE 118

[Close]

BLAST of Carg01010 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]

BLAST of Carg01010 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]

BLAST of Carg01010 vs. TAIR 10
Match: AT2G37060.3 (nuclear factor Y, subunit B8 )

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]

BLAST of Carg01010 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 184.5 bits (467), Expect = 4.9e-47
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110

The following BLAST results are available for this feature:

BLAST of Carg01010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027991.1	6.8e-59	100.00	Nuclear transcription factor Y subunit B-8 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022948121.1	4.4e-58	100.00	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_0229481...	[more]
KAG6596449.1	1.7e-57	100.00	putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a...	[more]
XP_004137802.1	3.8e-57	99.14	nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus] >XP_0084...	[more]
XP_023529112.1	3.8e-57	99.14	nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of Carg01010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25209	1.2e-50	86.89	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q60EQ4	3.0e-49	81.40	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q67XJ2	2.5e-48	88.99	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
Q8VYK4	3.7e-47	84.03	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SLG0	6.9e-46	79.13	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg01010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSG0	2.1e-58	100.00	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G8V7	2.1e-58	100.00	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J2H6	1.8e-57	99.14	nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1FB03	1.8e-57	99.14	nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucurbita moschata...	[more]
A0A5D3DNK1	1.8e-57	99.14	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Carg01010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53340.1	1.8e-49	88.99	nuclear factor Y, subunit B10	[more]
AT2G37060.1	2.6e-48	84.03	nuclear factor Y, subunit B8	[more]
AT2G37060.2	2.6e-48	84.03	nuclear factor Y, subunit B8	[more]
AT2G37060.3	2.6e-48	84.03	nuclear factor Y, subunit B8	[more]
AT2G38880.2	4.9e-47	79.13	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 77..95 score: 39.35 coord: 96..114 score: 40.31 coord: 58..76 score: 54.07
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11064:SF134	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED	coord: 1..116
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 16..117 e-value: 2.2E-46 score: 159.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 27..115
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 30..94 e-value: 3.0E-28 score: 97.9
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..116
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 61..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01010-RA	Carg01010-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding