Carg00987 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00987
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 1769749 .. 1770004 (+)
RNA-Seq ExpressionCarg00987
SyntenyCarg00987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTTGGAGGTTTCTGTGCTGTGGAAGTCGATTTTTCGAAGAATGTGATGTAGGTTTTTGAAGTCTGATGGTGACTTGGGACGGGAGAATTCGAAGGATGAGGATTCCGAAGAGAGTCTGGTTAATTATGCAAAAGTCTATGGGGCTCCTCGTGGGTGGAAATCACACATCCTCCAGGTTTTGTACTCGCTAATGTTGTTTTGGTTTCTCAATTTGGATTTGTTTCTTCTGTGGTGTTGTTTTGAGGAATTATAA

mRNA sequence

GGTTTTGGAGGTTTCTGTGCTGTGGAAGTCGATTTTTCGAAGAATGTGATGTTTTTGAAGTCTGATGGTGACTTGGGACGGGAGAATTCGAAGGATGAGGATTCCGAAGAGAGTCTGGTTAATTATGCAAAAGTCTATGGGGCTCCTCGTGGGTGGAAATCACACATCCTCCAGGTTTTGTACTCGCTAATGTTGTTTTGGTTTCTCAATTTGGATTTGTTTCTTCTGTGGTGTTGTTTTGAGGAATTATAA

Coding sequence (CDS)

GGTTTTGGAGGTTTCTGTGCTGTGGAAGTCGATTTTTCGAAGAATGTGATGTTTTTGAAGTCTGATGGTGACTTGGGACGGGAGAATTCGAAGGATGAGGATTCCGAAGAGAGTCTGGTTAATTATGCAAAAGTCTATGGGGCTCCTCGTGGGTGGAAATCACACATCCTCCAGGTTTTGTACTCGCTAATGTTGTTTTGGTTTCTCAATTTGGATTTGTTTCTTCTGTGGTGTTGTTTTGAGGAATTATAA

Protein sequence

GFGGFCAVEVDFSKNVMFLKSDGDLGRENSKDEDSEESLVNYAKVYGAPRGWKSHILQVLYSLMLFWFLNLDLFLLWCCFEEL
Homology
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BLAST of Carg00987 vs. NCBI nr
Match: KAG6580600.1 (hypothetical protein SDJN03_20602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 29 NSKDEDSEESLVNYAKVYGAPRGWKSHILQVLYSLM 65
          +SKDE +EE LVN+ K+YGAPRGWKSHI+Q+ +  +
Sbjct: 24 DSKDEGTEEGLVNFPKIYGAPRGWKSHIIQIAHGAL 59

The following BLAST results are available for this feature:
BLAST of Carg00987 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580600.12.0e-0461.11hypothetical protein SDJN03_20602, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg00987 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00987 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00987 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00987-RACarg00987-RAmRNA