Carg00980 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00980
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 1791843 .. 1792269 (+)
RNA-Seq ExpressionCarg00980
SyntenyCarg00980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCGATGCGTATTTCTCTTTGTTATCGACAAATAAAGAAAGAGTTTACCAGGACTCTAGAAGGGAGGCGATTCTGCAATTCCATGAGACCACTGACTTTCTCTTGCTTTTTAATGTAACATCAACATCTGCTAGCGATGAGCTGTTACACTTAAACTCAACAAAGCTCAGGGGAAAGGTAAGATCCTCAAGTTTCGAGTAAGTTCGTCCGATAATTAGATTATCAAGTCTCAACGTGCACGGGAATGTTGGTAGAGGGATTGCAGGAAAGAAAAGGATGGAGGTTTCTTTTTCTTGAATCAAGTGTATGTAGTAAAAGTTTACTCTTTTCACCCCTACTTAGAAACCAAATCAGACTACGAAAATTCTTCCGAAGATCTGTGTTTGTGTTTCTTGGAGTAAATTATTTTTTGAAGGATTAA

mRNA sequence

ATGAAGGTCGATGCGTATTTCTCTTTGTTATCGACAAATAAAGAAAGAGTTTACCAGGACTCTAGAAGGGAGGCGATTCTGCAATTCCATGAGACCACTGACTTTCTCTTGCTTTTTAATGTAACATCAACATCTGCTAGCGATGAGCTGTTACACTTAAACTCAACAAAGCTCAGGGGAAAGGATTAA

Coding sequence (CDS)

ATGAAGGTCGATGCGTATTTCTCTTTGTTATCGACAAATAAAGAAAGAGTTTACCAGGACTCTAGAAGGGAGGCGATTCTGCAATTCCATGAGACCACTGACTTTCTCTTGCTTTTTAATGTAACATCAACATCTGCTAGCGATGAGCTGTTACACTTAAACTCAACAAAGCTCAGGGGAAAGGATTAA

Protein sequence

MKVDAYFSLLSTNKERVYQDSRREAILQFHETTDFLLLFNVTSTSASDELLHLNSTKLRGKD
Homology
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BLAST of Carg00980 vs. NCBI nr
Match: KAG7028020.1 (hypothetical protein SDJN02_09200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MKVDAYFSLLSTNKERVYQDSRREAILQFHETTDFLLLFNVTSTSASDELLHLNSTKLRG 60
          MKVDAYFSLLSTNKERVYQDSRREAILQFHETTDFLLLFNVTSTSASDELLHLNSTKLRG
Sbjct: 1  MKVDAYFSLLSTNKERVYQDSRREAILQFHETTDFLLLFNVTSTSASDELLHLNSTKLRG 60

Query: 61 KD 63
          KD
Sbjct: 61 KD 62

The following BLAST results are available for this feature:
BLAST of Carg00980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028020.11.3e-24100.00hypothetical protein SDJN02_09200, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00980-RACarg00980-RAmRNA