Carg00939 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00939
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L24
Location	Carg_Chr06: 2032972 .. 2035216 (+)
RNA-Seq Expression	Carg00939
Synteny	Carg00939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTTTTTCATCAACAGCGCGGCGGGAAGCTTAGTATCGCAGCGGCCATGGTTCTCAAGTTCGTCAAAATACTTCCATCTCTATTTTCATGCGTTCTTAGATCTGATGCCATATCCTCTGTTTTCGTTCTATATGTCGGCGTGTTTTTGTGGTTCTGTTTGCGCATTTGTACGTGCATTGTTCATGCTCGAGAGATCTAAGGTTTTGCGTGTTTTTGAAGTGAGAAATAGGCTTATTTTTAGAAGTCTTCCTTTTGAGATACTTCAAATCTTTAACGAAGTTCCGTGTTTTTTTTTTTTTTTTTTTTTGTGTGGGTTAAATATAGATACTCTACTTATTAGGCGTGATTACGGTTGCTATTTGCAACATGTCTGTGCACTGAGGTACTGCCGTGGTTAATTGGGACCAGCATCTGTTATGTTTTAATAACCTGGTTGGAAGGAAGTATTTCTGATGGAAATTTAGGAACAGGATATGTAATTTGAAGGGGAAGGTTTAGAAGATGAGTTTTTTTTTGTTTCTTGGACCTGTTATTTTAGTTTAATGTTTGAACAAACGGGTGTGGTATAATTTTATCATAAACTAAGTTCGAGAACTTCGAGATTCACGTGCTCAATCTTGTTCATGGGCTCTGTATGTTGGAAAAGAAGTATATGAGCTAGTAGCTTTTGAGTCATGAATTCTGCCCCTAATAGTTTGATACTAATCTTTCAGGACTGAGCTTTGTCGATTCAGTGGGGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGGCCGATTCTCAGGTGATTTTGGTTACTGTATTTTAGATTATTTTGAGGTAAACTGATATTTTTTTAGGTTAAACAATTATAGAAAACGTTGTAAACCCTTTCTTCTCTAATTAACCCCAACCTCTACAATGGTGCTTGGAGGTGTATTGTTTGATTTATTTGAATTATTCTCTGTTTTCTCCTTGCTTGTTTGACATTTTTGCTGTCAATACGTTAGGTGTTTCTCTTCGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCACAAGAAGGTAATATTAAGATTTTCTATCGACACTTTTTCTTTTTCTTTTTCTTTTTTTCTCACGAGGACCAGTGAATGAATATTGTCTGTAAATACCATATACCAACTCTATCACTTGGATAATGATTCTCTTCATGCAAACTTGATTCCACTGAAAATAGTTAATCTCGAAACAATCTCACAATGGGGGATTACAAACTAGTCAGGTTTCTAGTCTACTGATGGGGTCTAATGTGGATTTAAGTTTCACCTTAACTCATACTGAGCTCTAGGATTAGTTTTGCAAATACAAGTCACATTACTCAACATTTAAAGCCTTACAATTAAGTGTAATAACTAAATCCATACCTAAGAGATCTCACTTTAACCACATAGATGAAGGCTTCTCTTTGAGTGTTGTTTTGCTGGCTTGCTGTGGGCAATTGATCTTCATCCATTTTATTTTGACATTTGCAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCCTACTCCAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAAAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGTTCGTCCTCTTTATTCTTAAGATTATGAAGATCTTTTCTTTCAGCTTATGAAGATTTTTTAATTGAATTGCAGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAAAAGAAGGCCAAGAAGGCAGAAGTGATTGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGCACCCAAGGGTCCAAAGCTGGGTGGTGGCGGTGGAAAGCGTTGATCCTTCTATTAGGTTTTGTTTTGTGATTTAAATTGCCAGATTTGGTAGATAGGACAATCTGATAATTTTGCGTTCTTTTTTGTGTTATGAGAAGTAATCCGTATTAATTGTTAAACTTAATGTGCACTTATTCGAGTGGTTAATTTCCAGTTTAAATTTTATATTTCTAAGTCAGGATTGATAAGATTAGCTTCATTTTGTTACTCTTTAAGTTGGGTTTGAGGCTAACAGCTATAATAAAAATTAGATTAAGAAATGTTGTTTACTTCATATAAATTTGGATCCTTGAAAATGCTTATAGCTATGATGAAACGAGC

mRNA sequence

TAGGGTTTTTCATCAACAGCGCGGCGGGAAGCTTAGTATCGCAGCGGCCATGGTTCTCAAGACTGAGCTTTGTCGATTCAGTGGGGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGGCCGATTCTCAGGTGTTTCTCTTCGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCCTACTCCAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAAAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAAAAGAAGGCCAAGAAGGCAGAAGTGATTGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGCACCCAAGGGTCCAAAGCTGGGTGGTGGCGGTGGAAAGCGTTGATCCTTCTATTAGGTTTTGTTTTGTGATTTAAATTGCCAGATTTGGTAGATAGGACAATCTGATAATTTTGCGTTCTTTTTTGTGTTATGAGAAGTAATCCGTATTAATTGTTAAACTTAATGTGCACTTATTCGAGTGGTTAATTTCCAGTTTAAATTTTATATTTCTAAGTCAGGATTGATAAGATTAGCTTCATTTTGTTACTCTTTAAGTTGGGTTTGAGGCTAACAGCTATAATAAAAATTAGATTAAGAAATGTTGTTTACTTCATATAAATTTGGATCCTTGAAAATGCTTATAGCTATGATGAAACGAGC

Coding sequence (CDS)

ATGGTTCTCAAGACTGAGCTTTGTCGATTCAGTGGGGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGGCCGATTCTCAGGTGTTTCTCTTCGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCCTACTCCAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAAAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAAAAGAAGGCCAAGAAGGCAGAAGTGATTGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGCACCCAAGGGTCCAAAGCTGGGTGGTGGCGGTGGAAAGCGTTGA

Protein sequence

MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR

Homology

[Close]

BLAST of Carg00939 vs. NCBI nr
Match: KAG6596527.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028061.1 60S ribosomal protein L24 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.4 bits (781), Expect = 2.9e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 6.4e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. NCBI nr
Match: XP_022144771.1 (60S ribosomal protein L24 [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. NCBI nr
Match: XP_004137862.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa_002195 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 3.9e-76
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKGNV KG A KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. NCBI nr
Match: XP_028760594.1 (60S ribosomal protein L24-like [Prosopis alba])

HSP 1 Score: 294.3 bits (752), Expect = 6.6e-76
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 23  MVLKTELCRFSGGKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 82

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 83  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 142

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AK+QKA GKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 143 KTKDEKKAKKAEVMAKAQKAQGKGNVPKGAAPKGPKLGGGGGKR 186

[Close]

BLAST of Carg00939 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.6e-75
Identity = 150/163 (92.02%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K+QK+ GKGNV KGA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Carg00939 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 6.6e-71
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Carg00939 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  KSQK+ GKG++ KG A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Carg00939 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 1.8e-68
Identity = 144/165 (87.27%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Carg00939 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 9.0e-68
Identity = 142/164 (86.59%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRFIR+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV    +   GKG V KG+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of Carg00939 vs. ExPASy TrEMBL
Match: A0A6J1L0R7 (60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. ExPASy TrEMBL
Match: A0A6J1GGJ5 (60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. ExPASy TrEMBL
Match: A0A6J1CUE5 (60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.9e-78
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. ExPASy TrEMBL
Match: A0A0A0LGG6 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV+AKSQKAPGKGNV KG A KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. ExPASy TrEMBL
Match: A0A2I4FX24 (60S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.2e-76
Identity = 156/164 (95.12%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRGEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKSQK  GKGN+PKGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKSQKTQGKGNIPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Carg00939 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 268.1 bits (684), Expect = 4.7e-72
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+PK AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Carg00939 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-69
Identity = 144/165 (87.27%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPK-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N PK  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Carg00939 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+F+R D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of Carg00939 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+F+R D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of Carg00939 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596527.1	2.9e-79	100.00	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022951028.1	6.4e-79	99.39	60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro...	[more]
XP_022144771.1	2.1e-77	96.95	60S ribosomal protein L24 [Momordica charantia]	[more]
XP_004137862.1	3.9e-76	96.34	60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa...	[more]
XP_028760594.1	6.6e-76	95.12	60S ribosomal protein L24-like [Prosopis alba]	[more]

BLAST of Carg00939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	7.6e-75	92.02	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q42347	6.6e-71	87.20	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
Q9FUL4	1.1e-70	91.25	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
P38666	1.8e-68	87.27	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]
P50888	9.0e-68	86.59	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]

BLAST of Carg00939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0R7	3.1e-79	99.39	60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1	[more]
A0A6J1GGJ5	3.1e-79	99.39	60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=...	[more]
A0A6J1CUE5	9.9e-78	96.95	60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV...	[more]
A0A0A0LGG6	1.9e-76	96.34	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 ...	[more]
A0A2I4FX24	3.2e-76	95.12	60S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1	[more]

BLAST of Carg00939 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	4.7e-72	87.20	ribosomal protein L24	[more]
AT3G53020.1	1.3e-69	87.27	Ribosomal protein L24e family protein	[more]
AT2G44860.1	4.2e-12	35.94	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.2e-12	35.94	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..132
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..138 e-value: 4.7E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..164
None	No IPR available	PANTHER	PTHR10792:SF37	60S RIBOSOMAL PROTEIN L24	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 0.0014 score: 27.9
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 2.4E-33 score: 116.2
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 3.8E-28 score: 97.5
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 6.84714E-20 score: 76.0718
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00939-RA	Carg00939-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome