Carg00921 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00921
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosome production factor 2 homolog
Location	Carg_Chr06: 2110639 .. 2114061 (-)
RNA-Seq Expression	Carg00921
Synteny	Carg00921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGGACGACCACCTCAAAAAGTTCACCAAAATCGGCGTCAGCTTGCAGTCGCCGGAACGGTCGATATTTCTCTGCTAGTTGAGCAACAAAACCCTAAATCTCATCTCTGTTATCTAACCGGCCGTGGACCATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTAAGTTCTTGCATTCCCGGATATGTATATCTCTCAATGCGTGTGGAAAATGAGAGTGTCTGCTTAATGATTGATTTAAAAGCATGTCAAAGAAGTTTTTATGATCTTTTCAATTGTTGTTTTTTTCTGTATTGATGGATTAAGTTATTGACTTGAACTGCAGGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGGTGCGTAACACTGGGAATGATTTCAGATTTTAGTTACATTCATTTTTCGCATTCGAAGGTATTTTATTTACTGTTCATCACAAAGAATGATTTCATGTGATACTAGTTCCAGACGCGTAGAGCTTTGTGTAAAACTTGATTTTTCTGGATGAGCACCTCTAGTTTTCCCCTTAATGGTTTTTAGATGTCTTCAATGATCGAAGAACTTAGCAGTTCTAAGACAGATGAACCTATGTAAGTAAGCATAGTCATGACGTGCATTTTTTTTGGGTAAGTTGAGCTACTAAGAATTTTGAGATCTTCGATTCATGAGGCTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATGAGTTTATAATCAAAGAATACTATCTTCATTGGTACGAGGCCGGGAAGCCCAAAGCAAAGTCATGAGAACTAATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCACGAGGCATCTATTTTTTTAAATTGGAAAGCCTTTGTCTTCATGGGTTCAAGTTCTGTATCTTTTTTCCTCTGCTATTATAGAATATGAGAGCGGGTACATTGCTTCACTCCTAAATGTCCATGGTAAAGAGCTTCTTGCTTCTCTGTCTCCAGCTATTTATTGATGTATTTATTGCACCTCTTTTGCAGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTACGATCATCACATCTATGATCTAATTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTTAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTATAAAACCCTGCAGCTTTGCCTGACTTGAACGTGAATGTTTAGAGATTAAGTAATCTATGTTCTTTGCAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACTGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGTTTAATGGCTATCTCTGAAATGAATTACACCTTCATTTTGTTTACTAAGCTGTTTGTCTAATCTTTATGTGTGTACTTTCTTCTAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTATATCTCTCTCTCTCTCTATCTGTATGTGTTCTCTCCAACTGTCACAATGCTTGCATATCCAGCTGAGATTGAAAATGTTTCATGTTATCAAACTCCACACGTTCATCACCAAAATAGGAACTTAACTACACCTCGCACAGTTTTGTCAGTCATTTGAATTTTTCAATACTCAATTTTGGCTCATAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGCGAAGCGAAAATGAAAAACAGAGATGACGTGCCAGCCTCTAAAAAACCAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAGTTCAACTAGTCTTAATACTGTTCGGTCCAATTCTCTTCTTACTAGAGTCGCTGTTATGAAATGCATAGTAGCTTGCCAATTATGTGGACAGAGCAGACACTATTTATTTGCGTGTATACAATTTTGCCTATGGTTTCCAATTTGATTTTACATGCAAACCTGCCTTTTATCATCTTAAAGCCTTCAGGTTTTTGCGGAGTTTGGCTGTGAACCTCATTGGTTAGCAGGACACAGAATTGTTGTAGCAAACAGAATGTGCCTTCAACCTCATTGGTTTCTCCCTCTCCTATCCTCTTACCCCAAGCTCTTCACATCTTACTGCAAAATCTTTGATTCTCTGTGGCTGAGAAGTAAATCACAGCAGACTGAGGGCAGGCGTTCTACAACGCCCGTGTCATCGCGGTCGCCACATCGGTCTCATGGTTATTAGTCTCCTTCCATTCCTCCAGGAGCTCCAGTTTCTTGTTGGATAGGATGCCTGCACAATGCATCACTCTGTGTCCAATAGTTAAATGCCTGCAACTTCATGTATTGTTAGCAAGGTGAATTTGAAATAAAAGCAGCTCACAAGGAACACACAACCAGCCTATATAAGCTCTGGAAATCAGAGAATGAAATAAGGGAAGATAAAATGGAAGTGCATAATCAATTCATTTTCCTAGCAAATCATTCAATCTAAAGTTCCTTCATCTAGAGATAACTAAGATTCCTAGTGGCTGCAAATGTAATGGCTAATGAAATCTGTGATTATTTATCCTCAGAGTCGTCTGTATTTTCGGGACAAGCTCGACTATCTGGATCATCAAATGGGAATCCAGAAGCTGACCATGTATTCGTGTGGGAATCTCCAGCCTGCAGTGAACCTAAGTCCCAGAATGGTGACAATCCGCTAGAGCCTTGCAAAAATGGATCCTCGAAATCAACTGGATTGCTCCAAAACTCGGTGTTTGAACTGGACGTGCCAGTATCGACATTCAAACCCGTGCTCCAAATTTCTTCTGGTTTAATGACATTTCCAGTTCCAAGATGTGAGAACTGTTGAATACTTTCTGCCAAAGAGACAAAGTAGTCAGGATTGACATCTTGTGAGGAACTCCCAATAGCCTTTCCCTTGGAATGTTGATCCTCCATTGACATGTTTGA

mRNA sequence

TCAGGACGACCACCTCAAAAAGTTCACCAAAATCGGCGTCAGCTTGCAGTCGCCGGAACGGTCGATATTTCTCTGCTAGTTGAGCAACAAAACCCTAAATCTCATCTCTGTTATCTAACCGGCCGTGGACCATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTACGATCATCACATCTATGATCTAATTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTTAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACTGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGCGAAGCGAAAATGAAAAACAGAGATGACGTGCCAGCCTCTAAAAAACCAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAGTTCAACTAGTCTTAATACTGTTCGGTCCAATTCTCTTCTTACTAGAGTCGCTGTTATGAAATGCATAGTAGCTTGCCAATTATGTGGACAGAGCAGACACTATTTATTTGCGTGTATACAATTTTGCCTATGGTTTCCAATTTGATTTTACATGCAAACCTGCCTTTTATCATCTTAAAGCCTTCAGGTTTTTGCGGAGTTTGGCTGTGAACCTCATTGGTTAGCAGGACACAGAATTGTTGTAGCAAACAGAATGTGCCTTCAACCTCATTGGTTTCTCCCTCTCCTATCCTCTTACCCCAAGCTCTTCACATCTTACTGCAAAATCTTTGATTCTCTGTGGCTGAGAAGTAAATCACAGCAGACTGAGGGCAGGCGTTCTACAACGCCCGTGTCATCGCGGTCGCCACATCGGTCTCATGGTTATTAGTCTCCTTCCATTCCTCCAGGAGCTCCAGTTTCTTGTTGGATAGGATGCCTGCACAATGCATCACTCTGTGTCCAATAGTTAAATGCCTGCAACTTCATGTATTGTTAGCAAGGTGAATTTGAAATAAAAGCAGCTCACAAGGAACACACAACCAGCCTATATAAGCTCTGGAAATCAGAGAATGAAATAAGGGAAGATAAAATGGAAGTGCATAATCAATTCATTTTCCTAGCAAATCATTCAATCTAAAGTTCCTTCATCTAGAGATAACTAAGATTCCTAGTGGCTGCAAATGTAATGGCTAATGAAATCTGTGATTATTTATCCTCAGAGTCGTCTGTATTTTCGGGACAAGCTCGACTATCTGGATCATCAAATGGGAATCCAGAAGCTGACCATGTATTCGTGTGGGAATCTCCAGCCTGCAGTGAACCTAAGTCCCAGAATGGTGACAATCCGCTAGAGCCTTGCAAAAATGGATCCTCGAAATCAACTGGATTGCTCCAAAACTCGGTGTTTGAACTGGACGTGCCAGTATCGACATTCAAACCCGTGCTCCAAATTTCTTCTGGTTTAATGACATTTCCAGTTCCAAGATGTGAGAACTGTTGAATACTTTCTGCCAAAGAGACAAAGTAGTCAGGATTGACATCTTGTGAGGAACTCCCAATAGCCTTTCCCTTGGAATGTTGATCCTCCATTGACATGTTTGA

Coding sequence (CDS)

ATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTACGATCATCACATCTATGATCTAATTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTTAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACTGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGCGAAGCGAAAATGAAAAACAGAGATGACGTGCCAGCCTCTAAAAAACCAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAG

Protein sequence

MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVGIENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINLAGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKNRDDVPASKKPKEDSEKPKEDSE

Homology

[Close]

BLAST of Carg00921 vs. NCBI nr
Match: KAG7028079.1 (Ribosome production factor 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 627.1 bits (1616), Expect = 8.4e-176
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RDDVPASKKPKEDSEKPKEDSE
Sbjct: 301 RDDVPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. NCBI nr
Match: KAG6596544.1 (Ribosome production factor 2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 626.3 bits (1614), Expect = 1.4e-175
Identity = 321/322 (99.69%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVF+THCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFITHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RDDVPASKKPKEDSEKPKEDSE
Sbjct: 301 RDDVPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. NCBI nr
Match: XP_023540188.1 (ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 624.8 bits (1610), Expect = 4.2e-175
Identity = 321/322 (99.69%), Postives = 321/322 (99.69%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RDDVPASKKPKEDSEKPKEDSE
Sbjct: 301 RDDVPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. NCBI nr
Match: XP_023005644.1 (ribosome production factor 2 homolog [Cucurbita maxima])

HSP 1 Score: 622.1 bits (1603), Expect = 2.7e-174
Identity = 319/321 (99.38%), Postives = 320/321 (99.69%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDS 322
           RDD+PASKKPKEDSEKPKEDS
Sbjct: 301 RDDMPASKKPKEDSEKPKEDS 321

[Close]

BLAST of Carg00921 vs. NCBI nr
Match: XP_022945126.1 (ribosome production factor 2 homolog [Cucurbita moschata])

HSP 1 Score: 613.6 bits (1581), Expect = 9.7e-172
Identity = 316/322 (98.14%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRER EAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RD+ PASKK KEDSEKPKEDSE
Sbjct: 301 RDNGPASKKQKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. ExPASy Swiss-Prot
Match: Q9LUG5 (Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.3e-128
Identity = 226/315 (71.75%), Postives = 272/315 (86.35%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+++RTPK GK KR LE RAPKLVETGKKTLILHGTKTS  L+ V+TE+Y LKK  A++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNE I+PFE+GG++SLEFFS KTDCSI VYGSH+KKRPDNLV+ R YDH +YDLIEVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKH KEVL D+FRGEVV+N+NL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL++KKSGS+VPRMELVEVGPSMDLV+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ ++ L DKSKG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 RDDVPASKKPKEDSE 316
           +++  A KK K  SE
Sbjct: 301 KEETVA-KKMKVSSE 314

[Close]

BLAST of Carg00921 vs. ExPASy Swiss-Prot
Match: Q9AWM9 (Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.8e-120
Identity = 214/312 (68.59%), Postives = 271/312 (86.86%), Query Frame = 0


Query: 4   VRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSRR 63
           +R P++ + KREL K APKLVETGKKTLILHGTKTS VLN VL +++HLK+++AVKYS++
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVGIEN 123
           N+ I+PFE+GG++SLEFFSLKTDCS+IVYGSHSKKRP+NLV+ RTYDHHIYDL+EVG+EN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINLAGL 183
           +KS+ S+ YDKKL+P++GSKPF  FIGE FE+VEELKH KEVLLD+F+GEVVEN+NLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKEA 243
           DRV+VCTAISP  V++ HCALR+K+SG+ +PR+ELVEVGPSMDLVVRRHR P + L+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKNRDD 303
           MKTA D AKK  KNV++D +HGK+G++YIPDQ++  ++L +  KG+KRERREAK KN+D 
Sbjct: 245 MKTA-DHAKKM-KNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAK-KNKDH 304

Query: 304 VPASKKPKEDSE 316
              SKK K + E
Sbjct: 305 ---SKKQKINPE 310

[Close]

BLAST of Carg00921 vs. ExPASy Swiss-Prot
Match: Q2YDN6 (Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 0


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           +V  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D+IE+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ +  K +L+D FRG  V NI LAG
Sbjct: 126 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKNRD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R A+ K  D
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERKAED 305

Query: 303 DVPASKKPKED 314
           +   SK+ K++
Sbjct: 306 EENKSKRIKKN 306

[Close]

BLAST of Carg00921 vs. ExPASy Swiss-Prot
Match: Q9JJ80 (Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-55
Identity = 134/311 (43.09%), Postives = 189/311 (60.77%), Query Frame = 0


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           KV  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   V Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D+IE+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ +  K +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  KV+     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKNRD 302
           +MK  K    KK KN+SQD      GRI++  Q +  +    K KG+K  +R A+    D
Sbjct: 246 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLK--KRPAENGVDD 305

Query: 303 DVPASKKPKED 314
               SK+ K++
Sbjct: 306 QGKKSKRIKKN 306

[Close]

BLAST of Carg00921 vs. ExPASy Swiss-Prot
Match: Q9H7B2 (Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 2.6e-55
Identity = 133/311 (42.77%), Postives = 190/311 (61.09%), Query Frame = 0


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           +V  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   V Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D+IE+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINLAG 182
           NF S+      K   P  G+KP + F G+ F+  E+ +  K +L+D FRG  V NI LAG
Sbjct: 126 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKNRD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R A+    D
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERITED 305

Query: 303 DVPASKKPKED 314
               SK+ K++
Sbjct: 306 HEKKSKRIKKN 306

[Close]

BLAST of Carg00921 vs. ExPASy TrEMBL
Match: A0A6J1KZU6 (Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498582 PE=3 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.3e-174
Identity = 319/321 (99.38%), Postives = 320/321 (99.69%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDS 322
           RDD+PASKKPKEDSEKPKEDS
Sbjct: 301 RDDMPASKKPKEDSEKPKEDS 321

[Close]

BLAST of Carg00921 vs. ExPASy TrEMBL
Match: A0A6J1FZZ6 (Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449459 PE=3 SV=1)

HSP 1 Score: 613.6 bits (1581), Expect = 4.7e-172
Identity = 316/322 (98.14%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLDMFRGEVVENINL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRER EAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RD+ PASKK KEDSEKPKEDSE
Sbjct: 301 RDNGPASKKQKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. ExPASy TrEMBL
Match: A0A6J1F357 (Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111441948 PE=3 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 3.8e-166
Identity = 299/322 (92.86%), Postives = 316/322 (98.14%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDL+EVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           +DD PASKKPKEDSEKPKE+SE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg00921 vs. ExPASy TrEMBL
Match: A0A6J1J655 (Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481697 PE=3 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 8.5e-166
Identity = 300/322 (93.17%), Postives = 316/322 (98.14%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLKVRTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDLIEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERREAKMK+
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKS 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           +DD PASKKPKEDSEKPKE+SE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg00921 vs. ExPASy TrEMBL
Match: A0A0A0LAR1 (Ribosome production factor 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G750370 PE=3 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161
Identity = 291/322 (90.37%), Postives = 313/322 (97.20%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           ML++RTPKN KVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTE+YHLKKESAVKY
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SR+N+GIKPFE+GGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVIARTY+ HIYD++EVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKSMHSF YDKKLSPRVGSKPFITFIGEGFENVEELKH KEVLLD FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           +GLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+V+RRHRLP+DGLR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAMKTAKD+AKKKEKNVS+D I GKIGRIYIPDQKVGD+A+ DKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 RDDVPASKKPKEDSEKPKEDSE 323
           RDD PASKKPKEDSEKPKEDSE
Sbjct: 301 RDDGPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg00921 vs. TAIR 10
Match: AT3G23620.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 459.9 bits (1182), Expect = 1.7e-129
Identity = 226/315 (71.75%), Postives = 272/315 (86.35%), Query Frame = 0


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+++RTPK GK KR LE RAPKLVETGKKTLILHGTKTS  L+ V+TE+Y LKK  A++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120
           SRRNE I+PFE+GG++SLEFFS KTDCSI VYGSH+KKRPDNLV+ R YDH +YDLIEVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHFKEVLLDMFRGEVVENINL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKH KEVL D+FRGEVV+N+NL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL++KKSGS+VPRMELVEVGPSMDLV+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ ++ L DKSKG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 RDDVPASKKPKEDSE 316
           +++  A KK K  SE
Sbjct: 301 KEETVA-KKMKVSSE 314

The following BLAST results are available for this feature:

BLAST of Carg00921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028079.1	8.4e-176	100.00	Ribosome production factor 2-like protein [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6596544.1	1.4e-175	99.69	Ribosome production factor 2-like protein, partial [Cucurbita argyrosperma subsp...	[more]
XP_023540188.1	4.2e-175	99.69	ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023005644.1	2.7e-174	99.38	ribosome production factor 2 homolog [Cucurbita maxima]	[more]
XP_022945126.1	9.7e-172	98.14	ribosome production factor 2 homolog [Cucurbita moschata]	[more]

BLAST of Carg00921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUG5	2.3e-128	71.75	Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g2362...	[more]
Q9AWM9	1.8e-120	68.59	Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q2YDN6	1.2e-55	42.44	Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1	[more]
Q9JJ80	1.5e-55	43.09	Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2	[more]
Q9H7B2	2.6e-55	42.77	Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2	[more]

BLAST of Carg00921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZU6	1.3e-174	99.38	Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498582...	[more]
A0A6J1FZZ6	4.7e-172	98.14	Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114494...	[more]
A0A6J1F357	3.8e-166	92.86	Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J655	8.5e-166	93.17	Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481697...	[more]
A0A0A0LAR1	1.3e-161	90.37	Ribosome production factor 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G750370 ...	[more]

BLAST of Carg00921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23620.1	1.7e-129	71.75	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 31..232 e-value: 4.2E-36 score: 135.9
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 35..231 e-value: 2.3E-33 score: 116.0
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 28..238 score: 23.401827
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..322
IPR039770	Ribosome biogenesis protein Rpf2	PANTHER	PTHR12728	BRIX DOMAIN CONTAINING PROTEIN	coord: 1..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00921-RA	Carg00921-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0032774	RNA biosynthetic process
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0019843	rRNA binding