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Carg00906 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCCGACTAGTAAAAGGTAGCTGTTCGCATATAAACCGTTCGCCGTTCGCCGGACTAATCGCGACCGGTTTTCTTCGATGGCGTTCTCTTCGATTACCGTGAAATGCCCCCCTGTTCTTCACCTGCGAGCCCTTCCTAAAAGCTCTGCACCTCAGAGTTCAATTTCCTTTCGATATTCACCTACGAAATTCAGCCGGAGAAAAACCTTATCGATTCGATCGGTTTCAGTCCCGGGTACGCCTCTTTATTTTTTCCCGCTGCTTTCCTCCTTGATTTTTGGGTATTATATTTGACTGTATCACCGTAGTTCATCGTTGTACTGTTTGGGGGAAAATTAATCAGGAATCTGTTTCTTTTGGATTGGAACTATGAACTTGGGAAGAACGTCAGGATTCGAGTTATTCTTTTAATTAATTAAACGTAGGATTCAATTTCTGGTTGCTTGGGATGGAAATTGTTGGCTCGTGGAAGTTTTATATTGAAATTAAGAAACAGAATTTTGGGGATTTTCTTATTGAGTTACACGGAAAATAAATTTCCCTGCTACTTGGAACGGATGATTTGTTTGTGAGTTCTAATTCGAGTTCCAGTTAGTGATATACAAACCATGAGTGTGCATATTTGTTTTGTATCAATGCCTAAATGATTAGGATGGATTGATCTTCATGTGGTTGCAAAGATGTTTACTAATTCTTGTGTTTGATAGCATTGATCTTTAATTCTTTTTTAGAGCATACAGAATGGATTTGAAATGATTAAACAACTCTTTTTCATGTTGAAACCACTCTGAAATATGTCTTAAATCAATTGAATGTTTGCTTTTATACTTTTAAATGCAATTTTCGTACTAGTTGAATGATTAAAAGTATGTTTTGGAGTGATTTTGAGTGTGAAAAAAAGTGATTTCAACCAATTTCAAAGTCACTCCTAAACATGACATGCAATATGGTTTTGTGAATGGCACTTTCCCTTTGCCGCTTACTAGAGATCAAAGATAAAATCTACTGAATCTTGCAGTTTCTGCATATGAAATATGATGAGTATATTATGCGTTATGATCACAGTTTTGCATTTTCATCTTATGTTGTTGAACATGTAAATTGTGATTAAACAGCTGCGCCAGCATCTGAAGGTATAGCACCGGCTATCTCATTAACCGATAATGCATTGAAACACTTGAATAAAATGAGATCTGAACGTAATGAAGATTTGTGCTTGAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTAGACCTGATGACTCAATTATAGAATATAATGGGTTTGTGATTGGTAAGAGTTATAGCTTTTCTTTTTTCGCTCTGAATTTCTAGTGGGGTTCTTAGATTTATCCTTTTCGAATTCATTATTTTTGTAGATGACCCATTTCTATATATATACTCTTAGCTTCATGCCTTCAAAAGAACATGGTGGATCTAAGTTGAGTTTTGCATGTTTTTGGATCGATACTTTCTTTCCCATGGAATGGTAGAGGGAAAGTTTTCAATTCTTCTTAGGATGAAAGAAGCTTACACTTTTATATATTCGGATATAGATGGGCATTTCATGAGCCATATGCCATAAATTTGAAGAGCCCAAGCCCACCGCTAACAAATATTGTCCGCTTTGGGCCGTTACGTATCATCGTCAGCCTTACTGTTTTAACATGCGACTATTAGAGAGATGTTTTCACACTCTTATAAGTAATGCTTCGTTCTCCTCTTCAATCATTGTGGGATCCCACAATCCACCCCCCTTGGGGGCCCAACGTCCTCGCTGGTACACCGCTCAGTATTTGTCTCTGATAGCATTTGTAATAACTAGTCCACCGCTAGTAGATATTGTTTGCTTTGGATTGAGAGATCCCACATCGGTTAGAGAGGAGAATCAAACATTTCTTATAAGAGCGTGGAAACCCTCTCCCTAATAGACGCGTGTTAAAAACGTGAAACTGACGTCGATACGTAACGGGCCAAATCGGACAATATTTGCTAGCAGTGAGCTTGGACTAATAATTTTACTCAATAGTTCATAGTCTATCTCCCCTTTGGACACTCGATGACTTGAATGAATTGATATCATAATTTTTTTATGCTGACTGATAAGCAGGTTGTGCAACTTTTGTCAAATGTACTTTTCTTTAATGCATACTATTTCAACACGAGCTTGTATATTGTTTCGATTCCTTGACAAATGCTCTCCTACTCTATTGAATAAGGAACCTAAGCATCTTTCAGTGAACTATGAAGGTATCATTTTATCTACTTCATTTTCGACTGTGCCCTCTTAAGTCGTAGGCTCGACGATGATTACGAGTTCACTTATATCACTTGCTTTATAGCTTAAGCTTTTGATACAAACTTCCCTCTCTACTTGTTTTGTAGTATGCGATCCCAAGAGCCTACTTTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTCATTGGTGGGGGCTTCTCCTTCAAGAACCCAAACGCTACACAAACTTGTGGCTGTGGAAAATCATTTGCTGCAGAAATGTAGGATCATCATTTGTGTATATATATATATATATATATGAATGATCAACACAAACTTGATAGTTTCATATTAAAGAAAACTTAGAACGTGTAAAAACTCT ATTTCCGACTAGTAAAAGGTAGCTGTTCGCATATAAACCGTTCGCCGTTCGCCGGACTAATCGCGACCGGTTTTCTTCGATGGCGTTCTCTTCGATTACCGTGAAATGCCCCCCTGTTCTTCACCTGCGAGCCCTTCCTAAAAGCTCTGCACCTCAGAGTTCAATTTCCTTTCGATATTCACCTACGAAATTCAGCCGGAGAAAAACCTTATCGATTCGATCGGTTTCAGTCCCGGCTGCGCCAGCATCTGAAGGTATAGCACCGGCTATCTCATTAACCGATAATGCATTGAAACACTTGAATAAAATGAGATCTGAACGTAATGAAGATTTGTGCTTGAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTAGACCTGATGACTCAATTATAGAATATAATGGGTTTGTGATTGTATGCGATCCCAAGAGCCTACTTTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTCATTGGTGGGGGCTTCTCCTTCAAGAACCCAAACGCTACACAAACTTGTGGCTGTGGAAAATCATTTGCTGCAGAAATGTAGGATCATCATTTGTGTATATATATATATATATATATGAATGATCAACACAAACTTGATAGTTTCATATTAAAGAAAACTTAGAACGTGTAAAAACTCT ATGGCGTTCTCTTCGATTACCGTGAAATGCCCCCCTGTTCTTCACCTGCGAGCCCTTCCTAAAAGCTCTGCACCTCAGAGTTCAATTTCCTTTCGATATTCACCTACGAAATTCAGCCGGAGAAAAACCTTATCGATTCGATCGGTTTCAGTCCCGGCTGCGCCAGCATCTGAAGGTATAGCACCGGCTATCTCATTAACCGATAATGCATTGAAACACTTGAATAAAATGAGATCTGAACGTAATGAAGATTTGTGCTTGAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTAGACCTGATGACTCAATTATAGAATATAATGGGTTTGTGATTGTATGCGATCCCAAGAGCCTACTTTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTCATTGGTGGGGGCTTCTCCTTCAAGAACCCAAACGCTACACAAACTTGTGGCTGTGGAAAATCATTTGCTGCAGAAATGTAG MAFSSITVKCPPVLHLRALPKSSAPQSSISFRYSPTKFSRRKTLSIRSVSVPAAPASEGIAPAISLTDNALKHLNKMRSERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM Homology
BLAST of Carg00906 vs. NCBI nr
Match: KAG7034403.1 (Iron-sulfur assembly protein IscA, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 345.5 bits (885), Expect = 2.6e-91 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
BLAST of Carg00906 vs. NCBI nr
Match: XP_022950286.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita moschata] >XP_023544833.1 iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6604246.1 Iron-sulfur assembly protein IscA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 344.4 bits (882), Expect = 5.8e-91 Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0
BLAST of Carg00906 vs. NCBI nr
Match: XP_022977954.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89 Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 0
BLAST of Carg00906 vs. NCBI nr
Match: XP_038880838.1 (iron-sulfur assembly protein IscA, chloroplastic [Benincasa hispida]) HSP 1 Score: 335.1 bits (858), Expect = 3.5e-88 Identity = 165/172 (95.93%), Postives = 171/172 (99.42%), Query Frame = 0
BLAST of Carg00906 vs. NCBI nr
Match: XP_008440129.1 (PREDICTED: iron-sulfur assembly protein IscA, chloroplastic [Cucumis melo]) HSP 1 Score: 328.2 bits (840), Expect = 4.3e-86 Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy Swiss-Prot
Match: Q9XIK3 (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISCA PE=2 SV=2) HSP 1 Score: 244.2 bits (622), Expect = 1.1e-63 Identity = 120/149 (80.54%), Postives = 130/149 (87.25%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy Swiss-Prot
Match: P72731 (Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1417 PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36 Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy Swiss-Prot
Match: P51217 (Uncharacterized protein ycf83 OS=Porphyra purpurea OX=2787 GN=ycf83 PE=3 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 3.7e-32 Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy Swiss-Prot
Match: Q1XDR9 (Uncharacterized protein ycf83 OS=Pyropia yezoensis OX=2788 GN=ycf83 PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30 Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy Swiss-Prot
Match: Q9MSA1 (Uncharacterized protein ycf83 OS=Galdieria sulphuraria OX=130081 GN=ycf83 PE=3 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 7.8e-30 Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy TrEMBL
Match: A0A6J1GEF0 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453419 PE=3 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 2.8e-91 Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy TrEMBL
Match: A0A6J1ISS5 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478089 PE=3 SV=1) HSP 1 Score: 339.3 bits (869), Expect = 9.1e-90 Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy TrEMBL
Match: A0A1S3B105 (iron-sulfur assembly protein IscA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484688 PE=3 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 2.1e-86 Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy TrEMBL
Match: A0A6J1BTR2 (iron-sulfur assembly protein IscA, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005271 PE=3 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83 Identity = 159/172 (92.44%), Postives = 165/172 (95.93%), Query Frame = 0
BLAST of Carg00906 vs. ExPASy TrEMBL
Match: A0A0A0KJ66 (Fe-S_biosyn domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486950 PE=3 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 4.8e-83 Identity = 160/174 (91.95%), Postives = 166/174 (95.40%), Query Frame = 0
BLAST of Carg00906 vs. TAIR 10
Match: AT1G10500.1 (chloroplast-localized ISCA-like protein ) HSP 1 Score: 244.2 bits (622), Expect = 7.7e-65 Identity = 120/149 (80.54%), Postives = 130/149 (87.25%), Query Frame = 0
BLAST of Carg00906 vs. TAIR 10
Match: AT5G03905.1 (Iron-sulphur cluster biosynthesis family protein ) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15 Identity = 53/159 (33.33%), Postives = 75/159 (47.17%), Query Frame = 0
BLAST of Carg00906 vs. TAIR 10
Match: AT2G36260.1 (Iron-sulphur cluster biosynthesis family protein ) HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12 Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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