Carg00902 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTCTTTTTTGAAAACGCCATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGAGTAACTTTCTTCCCTTCATTCCTAACATGTTAATTTCGGCTATAGAGCGCTCAAATCCGCTATATATATATTCTACATGATCCTATATAGCTCTGATTGTGTGTTTCAGTTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGAGCTTTGAGCTTTGATCATCCCTCTCTGTCGAAGGAGATCTTCCACTTTTCAACAACTTTCTATCTCTTCCTTTTCTTTTCGATCAGAAATTTGCATTCGAAGCTTTATGATTTAGATTGTGATAGAGATCTTAACCAGAAAACGATATGATAAATAGGCTTCTTGTGACAGAGAAGGATCATTTTGTGCCTTACTCTAGTCACTACCACAGCATGAATGGATGAAGTCCATTTGCTTTTCTATTTATCAATGAAATCTTTGAGGAATGTTCAGGAGAGTATCTATTAAGATATCTGATTCTATCTTCGTTTGAAGAAATGAAAGTCAATAAATGAAACAAATCCAATAATGAATGCAAGAAAGCAGTGGCTCAGAGGGAAAGTCACTATTAAAGAAGCAACACTGTATTATAACAAGAGGAAC TTTTTCTTTTTTGAAAACGCCATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGATTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGAGCTTTGAGCTTTGATCATCCCTCTCTGTCGAAGGAGATCTTCCACTTTTCAACAACTTTCTATCTCTTCCTTTTCTTTTCGATCAGAAATTTGCATTCGAAGCTTTATGATTTAGATTGTGATAGAGATCTTAACCAGAAAACGATATGATAAATAGGCTTCTTGTGACAGAGAAGGATCATTTTGTGCCTTACTCTAGTCACTACCACAGCATGAATGGATGAAGTCCATTTGCTTTTCTATTTATCAATGAAATCTTTGAGGAATGTTCAGGAGAGTATCTATTAAGATATCTGATTCTATCTTCGTTTGAAGAAATGAAAGTCAATAAATGAAACAAATCCAATAATGAATGCAAGAAAGCAGTGGCTCAGAGGGAAAGTCACTATTAAAGAAGCAACACTGTATTATAACAAGAGGAAC ATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGATTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGA MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEEAVDKVKENLVDKEKDKDKDKHSHDEL Homology
BLAST of Carg00902 vs. NCBI nr
Match: KAG7034399.1 (hypothetical protein SDJN02_04127 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 285.0 bits (728), Expect = 3.6e-73 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg00902 vs. NCBI nr
Match: KAG6604241.1 (hypothetical protein SDJN03_04850, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 283.9 bits (725), Expect = 7.9e-73 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg00902 vs. NCBI nr
Match: XP_022950287.1 (uncharacterized protein LOC111453420 [Cucurbita moschata]) HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72 Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Carg00902 vs. NCBI nr
Match: XP_022977956.1 (uncharacterized protein LOC111478091 [Cucurbita maxima]) HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70 Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0
BLAST of Carg00902 vs. NCBI nr
Match: XP_023544688.1 (uncharacterized protein LOC111804199 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70 Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0
BLAST of Carg00902 vs. ExPASy TrEMBL
Match: A0A6J1GEE2 (uncharacterized protein LOC111453420 OS=Cucurbita moschata OX=3662 GN=LOC111453420 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72 Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Carg00902 vs. ExPASy TrEMBL
Match: A0A6J1ILF3 (uncharacterized protein LOC111478091 OS=Cucurbita maxima OX=3661 GN=LOC111478091 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 8.0e-71 Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0
BLAST of Carg00902 vs. ExPASy TrEMBL
Match: A0A0A0KFX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487000 PE=4 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51 Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0
BLAST of Carg00902 vs. ExPASy TrEMBL
Match: A0A5D3CLZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005640 PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 7.1e-51 Identity = 114/147 (77.55%), Postives = 126/147 (85.71%), Query Frame = 0
BLAST of Carg00902 vs. ExPASy TrEMBL
Match: A0A1S3B154 (uncharacterized protein LOC103484692 OS=Cucumis melo OX=3656 GN=LOC103484692 PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 7.1e-51 Identity = 114/147 (77.55%), Postives = 126/147 (85.71%), Query Frame = 0
BLAST of Carg00902 vs. TAIR 10
Match: AT5G64820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 3.0e-09 Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 0
BLAST of Carg00902 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.9 bits (141), Expect = 3.9e-09 Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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