Carg00898 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00898
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 7317238 .. 7317696 (+)
RNA-Seq ExpressionCarg00898
SyntenyCarg00898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTCCAATATCTGGTGAACCGTGGGCTGAATCCTGTTCTCAGTTTGCCATTGAAGGAGCTCGCGCTTCCTTTCCTTATCGCAATCTCCTTTGAGTTGCGAGTTCCTTCGATTCAAGAACCGCGATTTCTTCTATTTCATCTGTATTTCTTGCTGTTTCTTTGATTTCTCAGACATGGACTTGACTATCAAGCTTCATCATCTTCACCTCCGCCCGAGCTTTCTCACCGGCTCACCTCTGTTGGATTCTCGGAAGACTGTATTTGGGGCTTGTCAGCACCAGGTTTCGAATCGAACGGCTGTTCAATCCCCATTGGAGAGGAATTTCCGAAATGGTATAGTGGATGCTATGTGATCGGTGTGGTTAGAGCCGCCAATTCTAGAATGACAGCGAATCCTAGAGTGGAACGGCGAGTGGCCGTAGCACTCGAGCATCGGTTTGCTGGGAAACTATAG

mRNA sequence

ATGAAAGTCCAATATCTGGTGAACCGTGGGCTGAATCCTGTTCTCAGTTTGCCATTGAAGGAGCTCGCGCTTCCTTTCCTTATCGCAATCTCCTTTGAGTTGCGAGTTCCTTCGATTCAAGAACCGCGATTTCTTCTATTTCATCTACATGGACTTGACTATCAAGCTTCATCATCTTCACCTCCGCCCGAGCTTTCTCACCGGCTCACCTCTGTTGGATTCTCGGAAGACTGTATTTGGGGCTTGTCAGCACCAGGTTTCGAATCGAACGGCTGTTCAATCCCCATTGGAGAGGAATTTCCGAAATGGTATAGTGGATGCTATGTGATCGGTGTGGTTAGAGCCGCCAATTCTAGAATGACAGCGAATCCTAGAGTGGAACGGCGAGTGGCCGTAGCACTCGAGCATCGGTTTGCTGGGAAACTATAG

Coding sequence (CDS)

ATGAAAGTCCAATATCTGGTGAACCGTGGGCTGAATCCTGTTCTCAGTTTGCCATTGAAGGAGCTCGCGCTTCCTTTCCTTATCGCAATCTCCTTTGAGTTGCGAGTTCCTTCGATTCAAGAACCGCGATTTCTTCTATTTCATCTACATGGACTTGACTATCAAGCTTCATCATCTTCACCTCCGCCCGAGCTTTCTCACCGGCTCACCTCTGTTGGATTCTCGGAAGACTGTATTTGGGGCTTGTCAGCACCAGGTTTCGAATCGAACGGCTGTTCAATCCCCATTGGAGAGGAATTTCCGAAATGGTATAGTGGATGCTATGTGATCGGTGTGGTTAGAGCCGCCAATTCTAGAATGACAGCGAATCCTAGAGTGGAACGGCGAGTGGCCGTAGCACTCGAGCATCGGTTTGCTGGGAAACTATAG

Protein sequence

MKVQYLVNRGLNPVLSLPLKELALPFLIAISFELRVPSIQEPRFLLFHLHGLDYQASSSSPPPELSHRLTSVGFSEDCIWGLSAPGFESNGCSIPIGEEFPKWYSGCYVIGVVRAANSRMTANPRVERRVAVALEHRFAGKL
Homology
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BLAST of Carg00898 vs. NCBI nr
Match: KAG7034396.1 (hypothetical protein SDJN02_04123, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.8 bits (743), Expect = 6.3e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MKVQYLVNRGLNPVLSLPLKELALPFLIAISFELRVPSIQEPRFLLFHLHGLDYQASSSS 60
           MKVQYLVNRGLNPVLSLPLKELALPFLIAISFELRVPSIQEPRFLLFHLHGLDYQASSSS
Sbjct: 1   MKVQYLVNRGLNPVLSLPLKELALPFLIAISFELRVPSIQEPRFLLFHLHGLDYQASSSS 60

Query: 61  PPPELSHRLTSVGFSEDCIWGLSAPGFESNGCSIPIGEEFPKWYSGCYVIGVVRAANSRM 120
           PPPELSHRLTSVGFSEDCIWGLSAPGFESNGCSIPIGEEFPKWYSGCYVIGVVRAANSRM
Sbjct: 61  PPPELSHRLTSVGFSEDCIWGLSAPGFESNGCSIPIGEEFPKWYSGCYVIGVVRAANSRM 120

Query: 121 TANPRVERRVAVALEHRFAGKL 143
           TANPRVERRVAVALEHRFAGKL
Sbjct: 121 TANPRVERRVAVALEHRFAGKL 142

The following BLAST results are available for this feature:
BLAST of Carg00898 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034396.16.3e-75100.00hypothetical protein SDJN02_04123, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00898 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00898 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00898 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00898-RACarg00898-RAmRNA