Carg00870 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00870
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mitochondrial transcription termination factor family protein
Location	Carg_Chr03: 7169305 .. 7170435 (+)
RNA-Seq Expression	Carg00870
Synteny	Carg00870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCAGAGCTGTGGGTTGTTTTAAGCTCTGCTATTTACTTTCTTCTAGGCAAGCATTTGCTTCCATTTTGGTAAACCAAAAATTAAAGGTTGCCTCTTGTTCTACTGTAAGTGCCAAGCAAGTTGAAGAGAAGGTGGGAGAAAGGCCGTTGGCACATGCCAATGACTCTACCGAAGTTTTCCGGAGATGGGGTTGTGCTGATGATGATATTGCACAAATCTTTGCACGTCGACCTTCTCTGCGCAGGAGTGACTTAAACCTACTACAAGATAAACTCCAACTGCTACAAGGTGTAGGCATCACATCTCCCGACCTTGTGAAGATCATTAATTGCCATCCTCGGTTCCTCAAATGTCGGATCAACAACAACTTCCATGAGCGGATCGAGTTCTTCTTGAAAATGTTTGAATCCAAGGAAGCTCTGATCAAAGCCATTGTAAAAAACCCTTTACTTTTGACTTATGATTTCCATAATAAAATCAAGCCTGCAATTTCCCAGTATGAAGAATTGGGTCTCAGTAGAAAGGATTTGATTCTCATGCTTTTATCTCGCCCCACACTGATCCCAAGATCTTCATTTAATGATGAGAAGATGGGATACATACAAAAAACAGGGCTCACACATGGTGACAAGATGTACAAATACATTGTTACAATCATTGGTATCTCACGACTTGAAACCATCCGTCAAAAAGTAGCCCATTTGGAAAAGTTTGGTTTCACAGAAGATGAGACATTCACTCTTCTTGGACGATCTCCCCTTATCTTAACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATTTTGTGCACGTTGAAGCTGCCTGCTAAGAGTATTCTTAACTACCCATTTCTATTATACTTAAACCTTGAAGCAGTCTTGAAGCCACGGGTACTTCTCTCAGGGAAGATGGAGGAAATGGGTCTCGATATTCAGATCAAAGGCGGTTTGATGCTCAGGGCTCTTAGGATGACAGAGAAGAGGTTCTTGCAGAGTTTTGTTAACAGTCAACCAAAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAAAGTGCAAAAGGCATTAAGCGTTTGGCAGAAACCTCAAGGAAGAGCCATCGCAGGGGCTTTCCTTTCTGA

mRNA sequence

ATGAAATCCAGAGCTGTGGGTTGTTTTAAGCTCTGCTATTTACTTTCTTCTAGGCAAGCATTTGCTTCCATTTTGGTAAACCAAAAATTAAAGGTTGCCTCTTGTTCTACTGTAAGTGCCAAGCAAGTTGAAGAGAAGGTGGGAGAAAGGCCGTTGGCACATGCCAATGACTCTACCGAAGTTTTCCGGAGATGGGGTTGTGCTGATGATGATATTGCACAAATCTTTGCACGTCGACCTTCTCTGCGCAGGAGTGACTTAAACCTACTACAAGATAAACTCCAACTGCTACAAGGTGTAGGCATCACATCTCCCGACCTTGTGAAGATCATTAATTGCCATCCTCGGTTCCTCAAATGTCGGATCAACAACAACTTCCATGAGCGGATCGAGTTCTTCTTGAAAATGTTTGAATCCAAGGAAGCTCTGATCAAAGCCATTGTAAAAAACCCTTTACTTTTGACTTATGATTTCCATAATAAAATCAAGCCTGCAATTTCCCAGTATGAAGAATTGGGTCTCAGTAGAAAGGATTTGATTCTCATGCTTTTATCTCGCCCCACACTGATCCCAAGATCTTCATTTAATGATGAGAAGATGGGATACATACAAAAAACAGGGCTCACACATGGTGACAAGATGTACAAATACATTGTTACAATCATTGGTATCTCACGACTTGAAACCATCCGTCAAAAAGTAGCCCATTTGGAAAAGTTTGGTTTCACAGAAGATGAGACATTCACTCTTCTTGGACGATCTCCCCTTATCTTAACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATTTTGTGCACGTTGAAGCTGCCTGCTAAGAGTATTCTTAACTACCCATTTCTATTATACTTAAACCTTGAAGCAGTCTTGAAGCCACGGGTACTTCTCTCAGGGAAGATGGAGGAAATGGGTCTCGATATTCAGATCAAAGGCGGTTTGATGCTCAGGGCTCTTAGGATGACAGAGAAGAGGTTCTTGCAGAGTTTTGTTAACAGTCAACCAAAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAAAGTGCAAAAGGCATTAAGCGTTTGGCAGAAACCTCAAGGAAGAGCCATCGCAGGGGCTTTCCTTTCTGA

Coding sequence (CDS)

ATGAAATCCAGAGCTGTGGGTTGTTTTAAGCTCTGCTATTTACTTTCTTCTAGGCAAGCATTTGCTTCCATTTTGGTAAACCAAAAATTAAAGGTTGCCTCTTGTTCTACTGTAAGTGCCAAGCAAGTTGAAGAGAAGGTGGGAGAAAGGCCGTTGGCACATGCCAATGACTCTACCGAAGTTTTCCGGAGATGGGGTTGTGCTGATGATGATATTGCACAAATCTTTGCACGTCGACCTTCTCTGCGCAGGAGTGACTTAAACCTACTACAAGATAAACTCCAACTGCTACAAGGTGTAGGCATCACATCTCCCGACCTTGTGAAGATCATTAATTGCCATCCTCGGTTCCTCAAATGTCGGATCAACAACAACTTCCATGAGCGGATCGAGTTCTTCTTGAAAATGTTTGAATCCAAGGAAGCTCTGATCAAAGCCATTGTAAAAAACCCTTTACTTTTGACTTATGATTTCCATAATAAAATCAAGCCTGCAATTTCCCAGTATGAAGAATTGGGTCTCAGTAGAAAGGATTTGATTCTCATGCTTTTATCTCGCCCCACACTGATCCCAAGATCTTCATTTAATGATGAGAAGATGGGATACATACAAAAAACAGGGCTCACACATGGTGACAAGATGTACAAATACATTGTTACAATCATTGGTATCTCACGACTTGAAACCATCCGTCAAAAAGTAGCCCATTTGGAAAAGTTTGGTTTCACAGAAGATGAGACATTCACTCTTCTTGGACGATCTCCCCTTATCTTAACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATTTTGTGCACGTTGAAGCTGCCTGCTAAGAGTATTCTTAACTACCCATTTCTATTATACTTAAACCTTGAAGCAGTCTTGAAGCCACGGGTACTTCTCTCAGGGAAGATGGAGGAAATGGGTCTCGATATTCAGATCAAAGGCGGTTTGATGCTCAGGGCTCTTAGGATGACAGAGAAGAGGTTCTTGCAGAGTTTTGTTAACAGTCAACCAAAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAAAGTGCAAAAGGCATTAAGCGTTTGGCAGAAACCTCAAGGAAGAGCCATCGCAGGGGCTTTCCTTTCTGA

Protein sequence

MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTEVFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKCRINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLILMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKFGFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKPRVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIKRLAETSRKSHRRGFPF

Homology

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BLAST of Carg00870 vs. NCBI nr
Match: KAG7034369.1 (Transcription termination factor MTERF2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 734.2 bits (1894), Expect = 5.7e-208
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC
Sbjct: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF
Sbjct: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK
Sbjct: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

[Close]

BLAST of Carg00870 vs. NCBI nr
Match: XP_022950832.1 (uncharacterized protein LOC111453817 [Cucurbita moschata] >XP_022950833.1 uncharacterized protein LOC111453817 [Cucurbita moschata])

HSP 1 Score: 728.4 bits (1879), Expect = 3.1e-206
Identity = 374/376 (99.47%), Postives = 375/376 (99.73%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLK 
Sbjct: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKG 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF
Sbjct: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFL+SFVNSQPKDVADELMQFYQSAKGIK
Sbjct: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLESFVNSQPKDVADELMQFYQSAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

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BLAST of Carg00870 vs. NCBI nr
Match: XP_023544896.1 (uncharacterized protein LOC111804362 [Cucurbita pepo subsp. pepo] >XP_023544897.1 uncharacterized protein LOC111804362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 708.8 bits (1828), Expect = 2.6e-200
Identity = 362/376 (96.28%), Postives = 369/376 (98.14%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGE PLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGEGPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIA+IFARRPSLRRSDLNLLQDKL+LLQGVGITSPDLVKIINCHPR LKC
Sbjct: 61  VFRRWGCADDDIAKIFARRPSLRRSDLNLLQDKLELLQGVGITSPDLVKIINCHPRILKC 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKE LIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEVLIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSF+DEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF
Sbjct: 181 LMLLSRPTLIPRSSFDDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLL  KMEEMGLD+QIKGGLMLRALRMTEKRFL+S+V SQPKDV DELMQFY+SAKGIK
Sbjct: 301 RVLLLRKMEEMGLDVQIKGGLMLRALRMTEKRFLKSYVYSQPKDVVDELMQFYESAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

[Close]

BLAST of Carg00870 vs. NCBI nr
Match: XP_022978595.1 (uncharacterized protein LOC111478530 isoform X2 [Cucurbita maxima])

HSP 1 Score: 694.9 bits (1792), Expect = 3.8e-196
Identity = 357/376 (94.95%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLL SRQAFASILVNQKLKVASCSTVSAKQVEE+VGE PLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLPSRQAFASILVNQKLKVASCSTVSAKQVEEEVGEGPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFAR PSLRRSDLN LQDKLQLLQG+GITSPDLVKIINC+PRFLKC
Sbjct: 61  VFRRWGCADDDIAQIFARGPSLRRSDLNQLQDKLQLLQGLGITSPDLVKIINCYPRFLKC 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKE LIKAIV+NPLLLT DFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEVLIKAIVRNPLLLTSDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVA+LEKF
Sbjct: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTL+LPAK ILNYPFL+YLNLE VLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLRLPAKIILNYPFLVYLNLEEVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLS KMEEMGL IQIKGGLMLRALRMTEKRFL+ FVNSQPKDVADELMQFYQSAKGIK
Sbjct: 301 RVLLSEKMEEMGLHIQIKGGLMLRALRMTEKRFLKRFVNSQPKDVADELMQFYQSAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

[Close]

BLAST of Carg00870 vs. NCBI nr
Match: XP_022978594.1 (uncharacterized protein LOC111478530 isoform X1 [Cucurbita maxima])

HSP 1 Score: 694.9 bits (1792), Expect = 3.8e-196
Identity = 357/376 (94.95%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLL SRQAFASILVNQKLKVASCSTVSAKQVEE+VGE PLAHANDSTE
Sbjct: 73  MKSRAVGCFKLCYLLPSRQAFASILVNQKLKVASCSTVSAKQVEEEVGEGPLAHANDSTE 132

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFAR PSLRRSDLN LQDKLQLLQG+GITSPDLVKIINC+PRFLKC
Sbjct: 133 VFRRWGCADDDIAQIFARGPSLRRSDLNQLQDKLQLLQGLGITSPDLVKIINCYPRFLKC 192

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKE LIKAIV+NPLLLT DFHNKIKPAISQYEELGLSRKDLI
Sbjct: 193 RINNNFHERIEFFLKMFESKEVLIKAIVRNPLLLTSDFHNKIKPAISQYEELGLSRKDLI 252

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVA+LEKF
Sbjct: 253 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKF 312

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTL+LPAK ILNYPFL+YLNLE VLKP
Sbjct: 313 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLRLPAKIILNYPFLVYLNLEEVLKP 372

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLS KMEEMGL IQIKGGLMLRALRMTEKRFL+ FVNSQPKDVADELMQFYQSAKGIK
Sbjct: 373 RVLLSEKMEEMGLHIQIKGGLMLRALRMTEKRFLKRFVNSQPKDVADELMQFYQSAKGIK 432

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 433 RLAETSRKSHRRGFPF 448

[Close]

BLAST of Carg00870 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-06
Identity = 60/266 (22.56%), Postives = 117/266 (43.98%), Query Frame = 0


Query: 62  FRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQG-VGITSPDLVKIINCHPRFLKC 121
           FR  G  D  I ++  +   L ++  ++  +    L   VGI    L  I++  P+ L  
Sbjct: 13  FRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRCPKILTL 72

Query: 122 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 181
           R++      +E    +  +   +  AI K P +L++    K+ P ++ ++ LG+    L 
Sbjct: 73  RLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLG 132

Query: 182 LMLLSRPTLIPRSSFNDEKM----GYIQKTGLTHGDKMYKYIVT---IIGISRLETIRQK 241
            M+L  P LI  S   D K+     ++   GL     + K +V    ++G S  + +R  
Sbjct: 133 KMILFNPRLISYSI--DTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPT 192

Query: 242 VAHLE-KFGFTEDETFTLLGRSPLILTLSVDKVQR-NMTFIL-CTL--KLPAKSILNYPF 301
              L+   G +ED   +++   P +L   V+K+ + N  ++  C       A  +  YP 
Sbjct: 193 TEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQ 252

Query: 302 LLYLNLEAVLKPRVLLSGKMEEMGLD 315
           +L  +++  L+PR+    ++   G+D
Sbjct: 253 ILIKSVKNSLQPRIRFLVQVMGRGMD 276

[Close]

BLAST of Carg00870 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-06
Identity = 52/226 (23.01%), Postives = 99/226 (43.81%), Query Frame = 0


Query: 80  PSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKCRINNNFHERIEFFLKMFE- 139
           PSLR + ++ +     LL   G++ P + +I++  P  L     +     + F       
Sbjct: 55  PSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISI 114

Query: 140 SKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLILMLLSRPTLIPRSSFNDE 199
           S++ + K+I + P LL      +++PA++  + LG          + R T+  R+     
Sbjct: 115 SEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLG---------FVGRDTITSRN----- 174

Query: 200 KMGYIQKTGLTHGDKMYKYIVTIIGISRLE-TIRQKVAHLEK-FGFTEDETFTLLGRSPL 259
                                T++ +S +E T+  K+ +LE+  GFT +E   ++ RSP 
Sbjct: 175 ---------------------TVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPA 234

Query: 260 ILTLSVD-KVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKPR 302
           +LT SVD  +   + F +  ++   K +  +P     +LE  +KPR
Sbjct: 235 LLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPR 245

[Close]

BLAST of Carg00870 vs. ExPASy TrEMBL
Match: A0A6J1GFZ6 (uncharacterized protein LOC111453817 OS=Cucurbita moschata OX=3662 GN=LOC111453817 PE=3 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.5e-206
Identity = 374/376 (99.47%), Postives = 375/376 (99.73%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLK 
Sbjct: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKG 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF
Sbjct: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFL+SFVNSQPKDVADELMQFYQSAKGIK
Sbjct: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLESFVNSQPKDVADELMQFYQSAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

[Close]

BLAST of Carg00870 vs. ExPASy TrEMBL
Match: A0A6J1IQK9 (uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 1.9e-196
Identity = 357/376 (94.95%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLL SRQAFASILVNQKLKVASCSTVSAKQVEE+VGE PLAHANDSTE
Sbjct: 1   MKSRAVGCFKLCYLLPSRQAFASILVNQKLKVASCSTVSAKQVEEEVGEGPLAHANDSTE 60

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFAR PSLRRSDLN LQDKLQLLQG+GITSPDLVKIINC+PRFLKC
Sbjct: 61  VFRRWGCADDDIAQIFARGPSLRRSDLNQLQDKLQLLQGLGITSPDLVKIINCYPRFLKC 120

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKE LIKAIV+NPLLLT DFHNKIKPAISQYEELGLSRKDLI
Sbjct: 121 RINNNFHERIEFFLKMFESKEVLIKAIVRNPLLLTSDFHNKIKPAISQYEELGLSRKDLI 180

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVA+LEKF
Sbjct: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKF 240

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTL+LPAK ILNYPFL+YLNLE VLKP
Sbjct: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLRLPAKIILNYPFLVYLNLEEVLKP 300

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLS KMEEMGL IQIKGGLMLRALRMTEKRFL+ FVNSQPKDVADELMQFYQSAKGIK
Sbjct: 301 RVLLSEKMEEMGLHIQIKGGLMLRALRMTEKRFLKRFVNSQPKDVADELMQFYQSAKGIK 360

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 361 RLAETSRKSHRRGFPF 376

[Close]

BLAST of Carg00870 vs. ExPASy TrEMBL
Match: A0A6J1IUG6 (uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 1.9e-196
Identity = 357/376 (94.95%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTE 60
           MKSRAVGCFKLCYLL SRQAFASILVNQKLKVASCSTVSAKQVEE+VGE PLAHANDSTE
Sbjct: 73  MKSRAVGCFKLCYLLPSRQAFASILVNQKLKVASCSTVSAKQVEEEVGEGPLAHANDSTE 132

Query: 61  VFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKC 120
           VFRRWGCADDDIAQIFAR PSLRRSDLN LQDKLQLLQG+GITSPDLVKIINC+PRFLKC
Sbjct: 133 VFRRWGCADDDIAQIFARGPSLRRSDLNQLQDKLQLLQGLGITSPDLVKIINCYPRFLKC 192

Query: 121 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 180
           RINNNFHERIEFFLKMFESKE LIKAIV+NPLLLT DFHNKIKPAISQYEELGLSRKDLI
Sbjct: 193 RINNNFHERIEFFLKMFESKEVLIKAIVRNPLLLTSDFHNKIKPAISQYEELGLSRKDLI 252

Query: 181 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKF 240
           LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVA+LEKF
Sbjct: 253 LMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKF 312

Query: 241 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKP 300
           GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTL+LPAK ILNYPFL+YLNLE VLKP
Sbjct: 313 GFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLRLPAKIILNYPFLVYLNLEEVLKP 372

Query: 301 RVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIK 360
           RVLLS KMEEMGL IQIKGGLMLRALRMTEKRFL+ FVNSQPKDVADELMQFYQSAKGIK
Sbjct: 373 RVLLSEKMEEMGLHIQIKGGLMLRALRMTEKRFLKRFVNSQPKDVADELMQFYQSAKGIK 432

Query: 361 RLAETSRKSHRRGFPF 377
           RLAETSRKSHRRGFPF
Sbjct: 433 RLAETSRKSHRRGFPF 448

[Close]

BLAST of Carg00870 vs. ExPASy TrEMBL
Match: A0A6J1E035 (uncharacterized protein LOC111024679 OS=Momordica charantia OX=3673 GN=LOC111024679 PE=3 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 5.3e-167
Identity = 311/382 (81.41%), Postives = 341/382 (89.27%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASILVN------QKLKVASCSTVSAKQVEEKVGERPLAH 60
           MK++    FKL YLL SRQAFASIL N      Q L+VA+CSTVSA QV E VG+  LAH
Sbjct: 1   MKTKVEAFFKLRYLLCSRQAFASILRNQPLEASQNLRVATCSTVSANQV-EGVGKGTLAH 60

Query: 61  ANDSTEVFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCH 120
           ANDS+EVFRRWGC D+DIA+IFAR PSLRRSDL  LQ+KL LL+G+GITSPDLVKIINC 
Sbjct: 61  ANDSSEVFRRWGCTDNDIAKIFARGPSLRRSDLKQLQNKLHLLKGLGITSPDLVKIINCR 120

Query: 121 PRFLKCRINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGL 180
           PRFLKCRINNNFH+RIEFFLKMFESKE LIKAIV+NP LLTYDFHN+IKP IS YEE+GL
Sbjct: 121 PRFLKCRINNNFHDRIEFFLKMFESKEVLIKAIVRNPSLLTYDFHNRIKPVISLYEEMGL 180

Query: 181 SRKDLILMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKV 240
           S+KDLILML+SRPTLIPRSSFNDEK+ YIQKTGL+ GDKMYKY+VTI+GISRLETIRQKV
Sbjct: 181 SKKDLILMLISRPTLIPRSSFNDEKLEYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKV 240

Query: 241 AHLEKFGFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNL 300
           A+LEKFGFT+DE F LLGRSPLILTLSVDKVQRNMTFILCTLKLPAK ILNYPFLLY NL
Sbjct: 241 ANLEKFGFTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILNYPFLLYFNL 300

Query: 301 EAVLKPRVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQ 360
           EAVLKPRVLLSGKMEEMGL +QIKG  MLRALRMTEKRFL++FVNSQPK VADELM+FYQ
Sbjct: 301 EAVLKPRVLLSGKMEEMGLHLQIKGRAMLRALRMTEKRFLKTFVNSQPKVVADELMEFYQ 360

Query: 361 SAKGIKRLAETSRKSHRRGFPF 377
           SAKG+KRLAETS+K+  RGFPF
Sbjct: 361 SAKGVKRLAETSKKNCCRGFPF 381

[Close]

BLAST of Carg00870 vs. ExPASy TrEMBL
Match: A0A6J1BYX5 (uncharacterized protein LOC111005954 OS=Momordica charantia OX=3673 GN=LOC111005954 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 3.2e-164
Identity = 304/382 (79.58%), Postives = 338/382 (88.48%), Query Frame = 0


Query: 1   MKSRAVGCFKLCYLLSSRQAFASIL------VNQKLKVASCSTVSAKQVEEKVGERPLAH 60
           MK++    FKL YL  SRQAFASIL       +Q L+VA+CSTVSA QV E  GE  LAH
Sbjct: 1   MKTKVEAFFKLRYLQCSRQAFASILRKQPLETSQNLRVATCSTVSANQV-EGAGEGTLAH 60

Query: 61  ANDSTEVFRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCH 120
           ANDS++VFRRWGC D+DIA+IFAR PSL RSDLN LQ+KL LL+G+GITSPDLVKIINC 
Sbjct: 61  ANDSSDVFRRWGCTDNDIAKIFARGPSLLRSDLNQLQNKLHLLKGLGITSPDLVKIINCR 120

Query: 121 PRFLKCRINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGL 180
           PRFLKCRINNNFHERI FFLK+FESKE LIKAIV+NP LLTYDFHN+IKP IS YEE+GL
Sbjct: 121 PRFLKCRINNNFHERIAFFLKIFESKEVLIKAIVRNPSLLTYDFHNRIKPVISLYEEMGL 180

Query: 181 SRKDLILMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKV 240
           S+KDLILML+SRP+LIPRSSFNDEK+ YIQKTGL+ GDKMYKY+VTI+GISRLETIRQKV
Sbjct: 181 SKKDLILMLISRPSLIPRSSFNDEKLKYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKV 240

Query: 241 AHLEKFGFTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNL 300
           A+LEKFGFT+DE F LLGRSPLILTLSVDKVQRNMTFILCTLKLPAK IL+YPFL Y NL
Sbjct: 241 ANLEKFGFTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILSYPFLFYFNL 300

Query: 301 EAVLKPRVLLSGKMEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQ 360
           +A+LKPRVLLSGKMEEMGL +QIKG  MLRALRMTEKRFL++FVNSQPKDVADELM+FYQ
Sbjct: 301 DAILKPRVLLSGKMEEMGLHLQIKGHAMLRALRMTEKRFLKTFVNSQPKDVADELMEFYQ 360

Query: 361 SAKGIKRLAETSRKSHRRGFPF 377
           SAKGIKRLAETS+K+  RGFPF
Sbjct: 361 SAKGIKRLAETSKKNCSRGFPF 381

[Close]

BLAST of Carg00870 vs. TAIR 10
Match: AT1G79220.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 351.3 bits (900), Expect = 9.7e-97
Identity = 183/369 (49.59%), Postives = 259/369 (70.19%), Query Frame = 0


Query: 8   CFKLCYLLSSRQAFASILVNQKLKVASCSTVSAKQVEEKVGERPLAHANDSTEVFRRWGC 67
           C  LC   S      S L +++ K      V  K+    +   PL       +V RRWGC
Sbjct: 40  CSTLCLNESEECIEDSDLSSRRKKFDYVGEVGEKEKVRDITSSPL-------QVLRRWGC 99

Query: 68  ADDDIAQIFARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFLKCRINNNFH 127
            DD+I+++F RRP+L+R+++  L+ KL LL+ +GITS DLVKI+NC PRF  CR+     
Sbjct: 100 DDDEISKLFTRRPALQRANVAQLEFKLSLLKPLGITSSDLVKILNCRPRFFSCRL--VLD 159

Query: 128 ERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLILMLLSRP 187
           ERI +F+++  SKE L + I++NP L+ YD  +KIKPAI  Y+ LG S++DL+ ML+SRP
Sbjct: 160 ERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEYYKGLGFSQQDLVAMLISRP 219

Query: 188 TLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKFGFTEDET 247
           TLIPR++FN+EK  YI+KTG+T   KM+KY+  IIG+SR+ETI +KV +LEKFGF+E+E 
Sbjct: 220 TLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEEEI 279

Query: 248 FTLLGRSPLILTLSVDKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKPRVLLSGK 307
           + L G+ P++L+LSV+KVQRNMTF++ ++KLPA S++ +P LL LNLE+ LKPR  L  +
Sbjct: 280 WHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLESRLKPRADLVKR 339

Query: 308 MEEMGLDIQIKGGLMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQSAKGIKRLAETSR 367
           + EM L   IK   + RA+RM+EKRFL+ +V   P+D+A ELM+FY+ +K +KRLAE S+
Sbjct: 340 VLEMRLKPLIKEVSIFRAVRMSEKRFLKVYVMCHPQDIATELMEFYEKSKNMKRLAEKSK 399

Query: 368 KSHRRGFPF 377
           K  R+GFPF
Sbjct: 400 KYIRKGFPF 399

[Close]

BLAST of Carg00870 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-14
Identity = 69/274 (25.18%), Postives = 128/274 (46.72%), Query Frame = 0


Query: 89  LLQDKLQLLQGVGITSPDLVKIINCHPRFLKCRINNNFHERIEFFLKMFESKEALIKAIV 148
           +L+ KL+  + +G T   L K ++ +   +   +       +E    +   K   +  I+
Sbjct: 106 ILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVIL 165

Query: 149 KNP--LLLTYDFHNKIKPAISQYEELGLSRKDLILMLLSRPTLIPRSSFNDEKM-GYIQK 208
                LLL+ D +  + P IS  E  G+    L  +L  +P +    + ++EK+ GY+ +
Sbjct: 166 SRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIF---NLSEEKLRGYVSR 225

Query: 209 T---GLTHGDKMYKYIVTIIGISRLETIRQKVAHLEKFGFTEDETFTLLGRSPLILTLSV 268
               G T   +M  + V  +     +T  +KV      GF+EDE   ++ RSP ++  S 
Sbjct: 226 ALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSE 285

Query: 269 DKVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKPRVLLSGKMEEMGLDI--QIKGG 328
           DK+     F L  + L  +++   P +L  NLE  + PR+ +   + E GL +  + K  
Sbjct: 286 DKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKK 345

Query: 329 LMLRALRMTEKRFLQSFVNSQPKDVADELMQFYQ 355
            M+  + MTE+ FL+ +V     ++A+EL+  Y+
Sbjct: 346 NMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

[Close]

BLAST of Carg00870 vs. TAIR 10
Match: AT1G62110.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-08
Identity = 52/233 (22.32%), Postives = 104/233 (44.64%), Query Frame = 0


Query: 36  STVSAKQVEEKVGERPLAHANDSTEVFRRWGCADDDIAQIFARRPSLRRSDLNLLQD-KL 95
           +T  A+ + +KV      + +    +FR +G  +  I+ I    P L   D     D KL
Sbjct: 65  ATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPRLLLIDAEKSLDIKL 124

Query: 96  QLLQGVGITSPDLVKIINCHPRFLKCRINNNFHERIEFFLKMFESKEALIKAIVKNPLLL 155
           Q L+  G +SP+L +I++  P+ L  +   +     +F  ++ E+ ++     +  PL  
Sbjct: 125 QFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIEADKSSKYETLCQPLPE 184

Query: 156 TYDFHNKIKPAISQYEELGLSRKDLILMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKM 215
                NKI+  +S   +LG+ +K L  +L+S    +      +E +  + + G       
Sbjct: 185 ANRQGNKIR-NVSVLRDLGVPQKLLFSLLISDAQPVCGKENFEESLKKVVEMGF--DPTT 244

Query: 216 YKYIVTIIGISRL--ETIRQKVAHLEKFGFTEDETFTLLGRSPLILTLSVDKV 266
            K++  +  + R   +TI ++V   + FGF  ++ + +  + P  L  S  K+
Sbjct: 245 SKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKI 294

[Close]

BLAST of Carg00870 vs. TAIR 10
Match: AT1G62010.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-08
Identity = 72/331 (21.75%), Postives = 135/331 (40.79%), Query Frame = 0


Query: 60  EVFRRWGCADDDIAQIF-ARRPSLRRSDLNLLQDKLQLLQGVGITSPDLVKIINCHPRFL 119
           ++ R +G  D  I+ I  +    L  +D   L  KLQ LQ  G +S +L ++++  P+ L
Sbjct: 75  DLLRSYGFTDSQISSIIRSDSRVLIDNDATSLGSKLQFLQSRGASSSELTEVVSTVPKIL 134

Query: 120 KCRINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKD 179
             R   +     +F   + E+ ++     + + L       NKI+  I    ELG+ +K 
Sbjct: 135 GKREGKSLSRYYDFIKVIIEADKSSKYEKISHSLAQ----GNKIR-NILVLRELGVPQKR 194

Query: 180 LILMLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVAHLE 239
           L+L+L+S+   +      D  +  + + G       + + + ++     +TI +K+    
Sbjct: 195 LLLLLISKSQPVCGKEKFDASLKKVVEMGFDPTTSTFVHALHMLYQMSDKTIEEKIRVYR 254

Query: 240 KFGFTED------------------------ETFTLLG-----------RSPLILTLSVD 299
             GF+ D                        ETF  LG           R P  +  S +
Sbjct: 255 SVGFSVDDVWAMFKKWPRSLTHSEKKVANSIETFLGLGFSRDVFMMMFKRFPPCIGYSTE 314

Query: 300 KVQRNMTFILCTLKLPAKSILNYPFLLYLNLEAVLKPRVLLSGKMEEMGLDIQIKGGLML 354
            V++   F++  +  P K++ + P +L  +LE    PR  +   +   GL ++ +   M 
Sbjct: 315 AVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVPRCNVIKVLMSKGL-LESELPPMS 374

[Close]

BLAST of Carg00870 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-08
Identity = 60/266 (22.56%), Postives = 117/266 (43.98%), Query Frame = 0


Query: 62  FRRWGCADDDIAQIFARRPSLRRSDLNLLQDKLQLLQG-VGITSPDLVKIINCHPRFLKC 121
           FR  G  D  I ++  +   L ++  ++  +    L   VGI    L  I++  P+ L  
Sbjct: 13  FRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRCPKILTL 72

Query: 122 RINNNFHERIEFFLKMFESKEALIKAIVKNPLLLTYDFHNKIKPAISQYEELGLSRKDLI 181
           R++      +E    +  +   +  AI K P +L++    K+ P ++ ++ LG+    L 
Sbjct: 73  RLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLG 132

Query: 182 LMLLSRPTLIPRSSFNDEKM----GYIQKTGLTHGDKMYKYIVT---IIGISRLETIRQK 241
            M+L  P LI  S   D K+     ++   GL     + K +V    ++G S  + +R  
Sbjct: 133 KMILFNPRLISYSI--DTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPT 192

Query: 242 VAHLE-KFGFTEDETFTLLGRSPLILTLSVDKVQR-NMTFIL-CTL--KLPAKSILNYPF 301
              L+   G +ED   +++   P +L   V+K+ + N  ++  C       A  +  YP 
Sbjct: 193 TEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQ 252

Query: 302 LLYLNLEAVLKPRVLLSGKMEEMGLD 315
           +L  +++  L+PR+    ++   G+D
Sbjct: 253 ILIKSVKNSLQPRIRFLVQVMGRGMD 276

The following BLAST results are available for this feature:

BLAST of Carg00870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034369.1	5.7e-208	100.00	Transcription termination factor MTERF2, chloroplastic, partial [Cucurbita argyr...	[more]
XP_022950832.1	3.1e-206	99.47	uncharacterized protein LOC111453817 [Cucurbita moschata] >XP_022950833.1 unchar...	[more]
XP_023544896.1	2.6e-200	96.28	uncharacterized protein LOC111804362 [Cucurbita pepo subsp. pepo] >XP_023544897....	[more]
XP_022978595.1	3.8e-196	94.95	uncharacterized protein LOC111478530 isoform X2 [Cucurbita maxima]	[more]
XP_022978594.1	3.8e-196	94.95	uncharacterized protein LOC111478530 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg00870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	1.2e-06	22.56	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
Q84X53	7.7e-06	23.01	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg00870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFZ6	1.5e-206	99.47	uncharacterized protein LOC111453817 OS=Cucurbita moschata OX=3662 GN=LOC1114538...	[more]
A0A6J1IQK9	1.9e-196	94.95	uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IUG6	1.9e-196	94.95	uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E035	5.3e-167	81.41	uncharacterized protein LOC111024679 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BYX5	3.2e-164	79.58	uncharacterized protein LOC111005954 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Carg00870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79220.1	9.7e-97	49.59	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	1.6e-14	25.18	Mitochondrial transcription termination factor family protein	[more]
AT1G62110.1	1.3e-08	22.32	Mitochondrial transcription termination factor family protein	[more]
AT1G62010.1	5.0e-08	21.75	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.1	8.4e-08	22.56	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 248..279 e-value: 150.0 score: 10.2 coord: 212..243 e-value: 310.0 score: 7.8 coord: 280..314 e-value: 420.0 score: 6.8 coord: 108..140 e-value: 51.0 score: 12.8 coord: 73..103 e-value: 340.0 score: 7.5 coord: 144..175 e-value: 0.21 score: 20.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 117..333 e-value: 3.5E-31 score: 108.3 coord: 61..149 e-value: 1.5E-12 score: 47.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 22..376
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 124..347 e-value: 7.4E-32 score: 112.5
None	No IPR available	PANTHER	PTHR13068:SF112	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 22..376

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00870-RA	Carg00870-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding